uvssa (uvssa,LOC104961899,LOC106533076)


Basic Information

Item Value
gene id uvssa
gene name uvssa,LOC104961899,LOC106533076
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 14537100 ~ 14573493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU140857
GACTGGCGAGATGCAGAGCTGATGCGAGACATCGAGGCGGCGACAGGAGAAGACCTGGGTTCTGACCGGGTGGGGAAAAAagggaaaggaaagaagaagaagaaataccCCAACCTGAGCGACCTGAAGCAGAGCGCCAACACGTCCCGCTCCAGGCTGGAGAAAAAAGTCTTCAACAAGAGCGCCATGCGCAGAGTAGCGGAGGTCCAGAGCAAAGCTGACAGGAGAAAACACGACAAGTTCTCCAACCAGTTCAACTACGCCCTCAACtgaacgacacacacacacacacacacacacacacacacactgaagttgTTTTTACTGATGTGCATGTGCAGTTTGTCAGTCTGATAACATTGTCTGTTTGAACAGTTGAATGATTTCACTGCTGTCTGATAAGGTATTGAGGAGAAGGACGTGTACAACTTCTGAGACACTTGATGAATTACAATTGTATTTCTTTTGGTCTCATTTATCGGCCAAATTGGCCTAATATTGCCTTATCAGCCAAATACAATTTCCATTTTGTGTAACTTAATATCGTTTGTACTCTTGTTTTTGTATGTTCTAGTTGAATTTGTGGTTGATGTTAGGATTAAAGCCATGTGTTGTACATGGACATGTTCAGGTTTAAACTGTGA
>XM_039813932.1
AACAGCTGACGGAAATAATAAGGTGTCATTGTTTCGGAGGAAGGTTCATAACCATAAACTATATACGTtcataaccatagacagtatataaagctTGTTGATGTGTGAACGGTAATGTAGCTAATATCTTCTGCTGGTTCGGTCACTTTCAGTGTTTCAGCGACGTCATTTAATAAAGCGCGCTAACGCTAaagtagctaacgctagcagctGGTGTACTGGTGAGAAGTGATGGAGCTGTCTCAGAGGGACAGGCTGTCAGAGCTGGTGGAGGAGCTGACCACATCAGGACAGCCCCAGCTCCACCAGGACAGGATGAAGGAGGTCAAGAAGATCTGCAGAGTGTCTAATGACTGCATCGAGCACGTGTACCACTCGCTGATATCTCAGCTCAACCAGGAACACGCTGAGGTCCGGCTGTCGGCCTTCCAGATTGCCACTGAGCTCTTCTCCAGGTCTCACCACTTCAGAACGCTTCTGGTGGACAACTTCCAGGAGCTCTTGGAGCTGACAGTAGAGACGGACTCTGAGCAGCCCCTCCCCCCGCCGAAGGAAGTAGCCAGGAAGCTGAGGTCACTGGCCATCCAGACTATCCAGTCATGGCAGGCCTCTTATGGCTCAGCCTATAAGAAGTTAGCGCTGGGCTACCACTTCCTCAAACAGGTTAAGAAGGTGGACTTCCAGGATGCTGAGGCCAGGACAGTAGCAGAGAGGAGgcgggaggaggagagacagaggaagatggAGAGGATCTACAAGGAGAGAGTGGAGGCAGCCTCCAAAGACATGGAGGAGTCGTGCCAGGAAATAGAGGCAACGTTGACAGAGATGGAATCATGCATGAGCCTGCTACTTCCCGGGTTTGACCGTACAGACGTCCAGACAACCAATCGCAGCCCTCCCAGCTCCCAAGCAGCCAGTGCATGTCCATCAGCTGATGAGCAGCCCTGCTGCAGCAGAGTCCTGAAggaggacaggagaggagggATGATACAaggagacgaggaggaggagacgaaGCATGAAGAGAGCagggaagagaaggagagaaaagaggtaGAAGATCGGGAAGGCgagaagggagaggaggagggcagcagtgaagaagaggagggggggCCTCCTGCTGGCGATGTGTTTATCCGGAGCTCTGGGCTGGTCTCCCACTCCTACAGTCTGGACCTGGACCTCCGTCCTGgTGTTCATGTTAAGGAGACAGAAGATAATGAGGCAGTGGTTTCCACGGTGATAGACCTCCATCGACTGATAATAACCAAACACCTGCCAGCTGTGCAGGGCTGGGTGCAGgtcttcACCAGGTCAGGTGCTGAGCAGCAGCTGTTAAGGAGAGCGCTGGATCTGAAGAGGTGTTTAGAAGTTGCGCTGCAGAAACACAAAGAGCTCCACATTGATTACAGGACAAGGGTCCGCAGAGTGatGAAGGCTTCCGCAGACGGAGAGGAAgacgatgatgatgaggatgatgatgattttgATGAGGTTCCAGAGAAAGAAGGATATGAGCCACACATTCCAGAGCATCTACGAGCCGAGTATGGTCTCGATCCAGCTCCgtcctcctccacagcaccgCCACCTGCTACAAGACCTGCAGCTGCACCTCTTCCGTCCTCCTCcacgtcctcctcctcctccaggcgGCTGAAGCGACTCATAGAGGAGGAGCAGGACCCAACATGTGCGGCAGCCACGCTGCGCCGCCTCAGACAGAGCCTGCCTCCGCCCGCTGAGTCCAGCAGCTCCTCTCGGTCCGGCTCAGACCAGAAGGCTGCTGGCGCTCCGGTGGTTCCATTCGGCCTGGACCTGTACTACTGGGGCCAGGAGCAGCCCAACGCTGGCAAGATCAtcaaGTCGGCCTCTCAGCATCAGTTCTGGGTCCCCATTGATGTGGACGAGGAGCGGGAGAACAAGGAGCTGCAGGCAGAGAGCCGGAGCAGATACATCTCCTTCCCCGGGAGCTTCACTCCGGTCAGCCATCACTGCAGAGCCCCGGTTGGCGGGGGGAAGCTGTGCCAGAGACAGGACCGCCTCAAGTGTCCCTTCCACGGGCCCATCGTTCCTCGAGACCAGGAGGGCCGACCCTGCCGGCAGGAGGACCGACTGagggaggagcaggaggagaggaggaggagggaggagcaaCCTGACTGGCGAGATGCAGAGCTGATGCGAGACATCGAGGCGGCGACAGGAGAAGACCTGGGTTCTGACCGGGTGGGGAAAAAagggaaaggaaagaagaagaagaaataccCCAACCTGAGCGACCTGAAGCAGAGCGCCAACACGTCCCGCTCCAGGCTGGAGAAAAAAGTCTTCAACAAGAGCGCCATGCGCAGAGTAGCGGAGGTCCAGAGCAAAGCTGACAGGAGAAAACACGACAAGTTCTCCAACCAGTTCAACTACGCCCTCAACtgaacgacacacacacacacacacacacacacacacacactgaagttgTTTTTACTGATGTGCATGTGCAGTTTGTCAGTCTGATAACATTGTCTGTTTGAACAGTTGAATGATTTCACTGCTGTCTGATAAGGTATTGAGGAGAAGGACGTGTACAACTTCTGAGACACTTGATGAATTACAATTGTATTTCTTTTGGTCTCATTTATCGGCCAAATTGGCCTAATATTGCCTTATCAGCCAAATACAATTTCCATTTTGTGTAACTTAATATCGTTTGTACTCTTGTTTTTGTATGTTCTAGTTGAATTTGTGGTTGATGTTAGGATTAAAGCCATGTGTTGTACATGGACATGTTCAGGTTTAAACTGTGAa
>XM_039813933.1
AACAGCTGACGGAAATAATAAGGTGTCATTGTTTCGGAGGAAGGTTCATAACCATAAACTATATACGTtcataaccatagacagtatataaagctTGTTGATGTGTGAACGGTAATGTAGCTAATATCTTCTGCTGGTTCGGTCACTTTCAGTGTTTCAGCGACGTCATTTAATAAAGCGCGCTAACGCTAaagtagctaacgctagcagctGGTGGACCGCTTTAGTCAGCACCATGTCCCTGTCCATAGGTGTACTGGTGAGAAGTGATGGAGCTGTCTCAGAGGGACAGGCTGTCAGAGCTGGTGGAGGAGCTGACCACATCAGGACAGCCCCAGCTCCACCAGGACAGGATGAAGGAGGTCAAGAAGATCTGCAGAGTGTCTAATGACTGCATCGAGCACGTGTACCACTCGCTGATATCTCAGCTCAACCAGGAACACGCTGAGGTCCGGCTGTCGGCCTTCCAGATTGCCACTGAGCTCTTCTCCAGGTCTCACCACTTCAGAACGCTTCTGGTGGACAACTTCCAGGAGCTCTTGGAGCTGACAGTAGAGACGGACTCTGAGCAGCCCCTCCCCCCGCCGAAGGAAGTAGCCAGGAAGCTGAGGTCACTGGCCATCCAGACTATCCAGTCATGGCAGGCCTCTTATGGCTCAGCCTATAAGAAGTTAGCGCTGGGCTACCACTTCCTCAAACAGGTTAAGAAGGTGGACTTCCAGGATGCTGAGGCCAGGACAGTAGCAGAGAGGAGgcgggaggaggagagacagaggaagatggAGAGGATCTACAAGGAGAGAGTGGAGGCAGCCTCCAAAGACATGGAGGAGTCGTGCCAGGAAATAGAGGCAACGTTGACAGAGATGGAATCATGCATGAGCCTGCTACTTCCCGGGTTTGACCGTACAGACGTCCAGACAACCAATCGCAGCCCTCCCAGCTCCCAAGCAGCCAGTGCATGTCCATCAGCTGATGAGCAGCCCTGCTGCAGCAGAGTCCTGAAggaggacaggagaggagggATGATACAaggagacgaggaggaggagacgaaGCATGAAGAGAGCagggaagagaaggagagaaaagaggtaGAAGATCGGGAAGGCgagaagggagaggaggagggcagcagtgaagaagaggagggggggCCTCCTGCTGGCGATGTGTTTATCCGGAGCTCTGGGCTGGTCTCCCACTCCTACAGTCTGGACCTGGACCTCCGTCCTGgTGTTCATGTTAAGGAGACAGAAGATAATGAGGCAGTGGTTTCCACGGTGATAGACCTCCATCGACTGATAATAACCAAACACCTGCCAGCTGTGCAGGGCTGGGTGCAGgtcttcACCAGGTCAGGTGCTGAGCAGCAGCTGTTAAGGAGAGCGCTGGATCTGAAGAGGTGTTTAGAAGTTGCGCTGCAGAAACACAAAGAGCTCCACATTGATTACAGGACAAGGGTCCGCAGAGTGatGAAGGCTTCCGCAGACGGAGAGGAAgacgatgatgatgaggatgatgatgattttgATGAGGTTCCAGAGAAAGAAGGATATGAGCCACACATTCCAGAGCATCTACGAGCCGAGTATGGTCTCGATCCAGCTCCgtcctcctccacagcaccgCCACCTGCTACAAGACCTGCAGCTGCACCTCTTCCGTCCTCCTCcacgtcctcctcctcctccaggcgGCTGAAGCGACTCATAGAGGAGGAGCAGGACCCAACATGTGCGGCAGCCACGCTGCGCCGCCTCAGACAGAGCCTGCCTCCGCCCGCTGAGTCCAGCAGCTCCTCTCGGTCCGGCTCAGACCAGAAGGCTGCTGGCGCTCCGGTGGTTCCATTCGGCCTGGACCTGTACTACTGGGGCCAGGAGCAGCCCAACGCTGGCAAGATCAtcaaGTCGGCCTCTCAGCATCAGTTCTGGGTCCCCATTGATGTGGACGAGGAGCGGGAGAACAAGGAGCTGCAGGCAGAGAGCCGGAGCAGATACATCTCCTTCCCCGGGAGCTTCACTCCGGTCAGCCATCACTGCAGAGCCCCGGTTGGCGGGGGGAAGCTGTGCCAGAGACAGGACCGCCTCAAGTGTCCCTTCCACGGGCCCATCGTTCCTCGAGACCAGGAGGGCCGACCCTGCCGGCAGGAGGACCGACTGagggaggagcaggaggagaggaggaggagggaggagcaaCCTGACTGGCGAGATGCAGAGCTGATGCGAGACATCGAGGCGGCGACAGGAGAAGACCTGGGTTCTGACCGGGTGGGGAAAAAagggaaaggaaagaagaagaagaaataccCCAACCTGAGCGACCTGAAGCAGAGCGCCAACACGTCCCGCTCCAGGCTGGAGAAAAAAGTCTTCAACAAGAGCGCCATGCGCAGAGTAGCGGAGGTCCAGAGCAAAGCTGACAGGAGAAAACACGACAAGTTCTCCAACCAGTTCAACTACGCCCTCAACtgaacgacacacacacacacacacacacacacacacacactgaagttgTTTTTACTGATGTGCATGTGCAGTTTGTCAGTCTGATAACATTGTCTGTTTGAACAGTTGAATGATTTCACTGCTGTCTGATAAGGTATTGAGGAGAAGGACGTGTACAACTTCTGAGACACTTGATGAATTACAATTGTATTTCTTTTGGTCTCATTTATCGGCCAAATTGGCCTAATATTGCCTTATCAGCCAAATACAATTTCCATTTTGTGTAACTTAATATCGTTTGTACTCTTGTTTTTGTATGTTCTAGTTGAATTTGTGGTTGATGTTAGGATTAAAGCCATGTGTTGTACATGGACATGTTCAGGTTTAAACTGTGAa
>XM_039813934.1
AACAGCTGACGGAAATAATAAGGTGTCATTGTTTCGGAGGAAGGTTCATAACCATAAACTATATACGTtcataaccatagacagtatataaagctTGTTGATGTGTGAACGGTAATGTAGCTAATATCTTCTGCTGGTTCGGTCACTTTCAGTGTTTCAGCGACGTCATTTAATAAAGCGCGCTAACGCTAaagtagctaacgctagcagctGGTGTACTGGTGAGAAGTGATGGAGCTGTCTCAGAGGGACAGGCTGTCAGAGCTGGTGGAGGAGCTGACCACATCAGGACAGCCCCAGCTCCACCAGGACAGGATGAAGGAGGTCAAGAAGATCTGCAGAGTGTCTAATGACTGCATCGAGCACGTGTACCACTCGCTGATATCTCAGCTCAACCAGGAACACGCTGAGGTCCGGCTGTCGGCCTTCCAGATTGCCACTGAGCTCTTCTCCAGGTCTCACCACTTCAGAACGCTTCTGGTGGACAACTTCCAGGAGCTCTTGGAGCTGACAGTAGAGACGGACTCTGAGCAGCCCCTCCCCCCGCCGAAGGAAGTAGCCAGGAAGCTGAGGTCACTGGCCATCCAGACTATCCAGTCATGGCAGGCCTCTTATGGCTCAGCCTATAAGAAGTTAGCGCTGGGCTACCACTTCCTCAAACAGGTTAAGAAGGTGGACTTCCAGGATGCTGAGGCCAGGACAGTAGCAGAGAGGAGgcgggaggaggagagacagaggaagatggAGAGGATCTACAAGGAGAGAGTGGAGGCAGCCTCCAAAGACATGGAGGAGTCGTGCCAGGAAATAGAGGCAACGTTGACAGAGATGGAATCATGCATGAGCCTGCTACTTCCCGGGTTTGACCGTACAGACGTCCAGACAACCAATCGCAGCCCTCCCAGCTCCCAAGCAGCCAGTGCATGTCCATCAGCTGATGAGCAGCCCTGCTGCAGCAGAGTCCTGAAggaggacaggagaggagggATGATACAaggagacgaggaggaggagacgaaGCATGAAGAGAGCagggaagagaaggagagaaaagaggtaGAAGATCGGGAAGGCgagaagggagaggaggagggcagcagtgaagaagaggagggggggCCTCCTGCTGGCGATGTGTTTATCCGGAGCTCTGGGCTGGTCTCCCACTCCTACAGTCTGGACCTGGACCTCCGTCCTGgTGTTCATGTTAAGGAGACAGAAGATAATGAGGCAGTGGTTTCCACGGTGATAGACCTCCATCGACTGATAATAACCAAACACCTGCCAGCTGTGCAGGGCTGGGTGCAGgtcttcACCAGGTCAGGTGCTGAGCAGCAGCTGTTAAGGAGAGCGCTGGATCTGAAGAGGTGTTTAGAAGTTGCGCTGCAGAAACACAAAGAGCTCCACATTGATTACAGGACAAGGGTCCGCAGAGTGatGAAGGCTTCCGCAGACGGAGAGGAAgacgatgatgatgaggatgatgatgattttgATGAGGTTCCAGAGAAAGAAGGATATGAGCCACACATTCCAGAGCATCTACGAGCCGAGTATGGTCTCGATCCAGCTCCgtcctcctccacagcaccgCCACCTGCTACAAGACCTGCAGCTGCACCTCTTCCGTCCTCCTCcacgtcctcctcctcctccaggcgGCTGAAGCGACTCATAGAGGAGGAGCAGGACCCAACATGTGCGGCAGCCACGCTGCGCCGCCTCAGACAGAGCCTGCCTCCGCCCGCTGAGTCCAGCTCCTCTCGGTCCGGCTCAGACCAGAAGGCTGCTGGCGCTCCGGTGGTTCCATTCGGCCTGGACCTGTACTACTGGGGCCAGGAGCAGCCCAACGCTGGCAAGATCAtcaaGTCGGCCTCTCAGCATCAGTTCTGGGTCCCCATTGATGTGGACGAGGAGCGGGAGAACAAGGAGCTGCAGGCAGAGAGCCGGAGCAGATACATCTCCTTCCCCGGGAGCTTCACTCCGGTCAGCCATCACTGCAGAGCCCCGGTTGGCGGGGGGAAGCTGTGCCAGAGACAGGACCGCCTCAAGTGTCCCTTCCACGGGCCCATCGTTCCTCGAGACCAGGAGGGCCGACCCTGCCGGCAGGAGGACCGACTGagggaggagcaggaggagaggaggaggagggaggagcaaCCTGACTGGCGAGATGCAGAGCTGATGCGAGACATCGAGGCGGCGACAGGAGAAGACCTGGGTTCTGACCGGGTGGGGAAAAAagggaaaggaaagaagaagaagaaataccCCAACCTGAGCGACCTGAAGCAGAGCGCCAACACGTCCCGCTCCAGGCTGGAGAAAAAAGTCTTCAACAAGAGCGCCATGCGCAGAGTAGCGGAGGTCCAGAGCAAAGCTGACAGGAGAAAACACGACAAGTTCTCCAACCAGTTCAACTACGCCCTCAACtgaacgacacacacacacacacacacacacacacacacactgaagttgTTTTTACTGATGTGCATGTGCAGTTTGTCAGTCTGATAACATTGTCTGTTTGAACAGTTGAATGATTTCACTGCTGTCTGATAAGGTATTGAGGAGAAGGACGTGTACAACTTCTGAGACACTTGATGAATTACAATTGTATTTCTTTTGGTCTCATTTATCGGCCAAATTGGCCTAATATTGCCTTATCAGCCAAATACAATTTCCATTTTGTGTAACTTAATATCGTTTGTACTCTTGTTTTTGTATGTTCTAGTTGAATTTGTGGTTGATGTTAGGATTAAAGCCATGTGTTGTACATGGACATGTTCAGGTTTAAACTGTGAa

Function

symbol description
uvssa Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in protein ubiquitination; response to UV; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be active in chromosome. Human ortholog(s) of this gene implicated in UV-sensitive syndrome. Orthologous to human UVSSA (UV stimulated scaffold protein A).

NR:

description
UV-stimulated scaffold protein A

GO: NA

KEGG:

id description
K23720 UVSSA; UV-stimulated scaffold protein A

RNA

RNA id representative length rna type GC content exon number start site end site
TU140857 False 644 TUCP 0.44 2 14537101 14538469
XM_039813932.1 False 2811 mRNA 0.53 15 14537100 14573493
XM_039813933.1 True 2849 mRNA 0.53 15 14537100 14573493
XM_039813934.1 False 2808 mRNA 0.53 15 14537100 14573493

Neighbor

gene id symbol gene type direction distance location
tctn1 LOC102786248 coding downstream 143243 14377330 ~ 14393857 (-)
dnd1 NA coding downstream 388274 14139360 ~ 14148826 (-)
mlsl LOC104935691 coding downstream 417705 14098069 ~ 14119395 (-)
pcdh10b pcdh10,LOC104931883,LOC102788477,LOC101469434,LOC102291307,LOC101063520 coding downstream 770916 13741169 ~ 13766184 (-)
LOC120566266 NA coding downstream 1777098 12751195 ~ 12760002 (-)
sil1 NA coding upstream 3179 14576672 ~ 14583887 (-)
spdl1 LOC104968203 coding upstream 11314 14584807 ~ 14598784 (-)
trappc11 trappc11 coding upstream 26230 14599723 ~ 14616585 (-)
LOC120566517 NA coding upstream 66160 14639653 ~ 14672315 (-)
mmp17b LOC104951499,LOC101483571 coding upstream 111644 14685137 ~ 14697280 (-)
G104867 NA non-coding downstream 155038 14381645 ~ 14382062 (-)
G104865 hvcn1 non-coding downstream 163655 14369159 ~ 14373445 (-)
G104825 hars,LOC103363215,LOC101173848 non-coding downstream 399193 14131340 ~ 14137907 (-)
G104822 NA non-coding downstream 407509 14057501 ~ 14129591 (-)
G104802 NA non-coding downstream 575762 13960780 ~ 13961338 (-)
G104924 NA non-coding upstream 61614 14635107 ~ 14637445 (-)
G104962 hspa9 non-coding upstream 204714 14778207 ~ 14778741 (-)
G104999 NA non-coding upstream 310366 14883859 ~ 14888207 (-)
G105001 NA non-coding upstream 317100 14890593 ~ 14891511 (-)
LOC120567075 NA non-coding upstream 374900 14948393 ~ 14953055 (-)
G104837 NA other downstream 281059 14150492 ~ 14256041 (-)
G104656 NA other downstream 2393356 12142700 ~ 12143744 (-)
G104610 immt,LOC102797104 other downstream 2544422 11964979 ~ 11992678 (-)
LOC120566907 magt1,LOC102791632 other downstream 4869149 9642540 ~ 9667951 (-)
G104258 NA other downstream 4898504 9637996 ~ 9638596 (-)
LOC120567441 LOC100697283,LOC102197909,LOC102314576 other upstream 161699 14735192 ~ 14739493 (-)
rnf44 rnf44 other upstream 515911 15089404 ~ 15108598 (-)
G105086 NA other upstream 560037 15133530 ~ 15134736 (-)
tspan17 tspan17,LOC103361971 other upstream 1024850 15598343 ~ 15619108 (-)
hnrnph1 hnrnph1,LOC102791917 other upstream 1292567 15866060 ~ 15871949 (-)

Expression


Co-expression Network