tmsb1


Basic Information

Item Value
gene id tmsb1
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17142082 ~ 17151616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141755
CCATGTTGTTGTGCAGGGCGTGTTGTCTCTACTTAAACCGTTGATTTTGCAAGGATTACGCAGACGCATTTTCATACAACAGAACCTGCGCACCTCTGCTCCAGAAATCTTCCAAAATGAGCAACAAATGTCCAATCACTAAGGAGGTGCAGCAGTTTAAAAAGGAAAGGCTAAATAGTACTGAAGTGGTAGAAAAAAACCCTCTCCCAACGACGCAAGAAAGCTGCCAAAGAGCCACTCAATAAGGAGTTGGAGACATTTGACCAACAAGTGCTCAAAAAGACTGAAGTGCAAGAAAAAAACCCTCTTCCAACTGCTGATGTAATTGAAGAAGAGAAGATAGCTTTGGAAGAGAAAGCTGCCAAAGAGCCACTCAATGAGGAGTTGGTGCAGTTTAAGACGAGCAAGCTAAGGAAGTCTATCACGAAAGAAAGTAACCATCGTCCAACTGCTGCGGaaATTGAAGCAGAGAAGAAAGCCATGAAAGAGGGGAAGAAGTAAAAGGGGAAACACCTTTTCATGATTCTTCTTGTTGAGACCTGCTCTTCCTCCATTTAGGAATCCTGTCCAGCATATCTGCCTATTcctgtgttttcatgttttattaaatgGTGTTTGGGCTGATCCTATGGGTGAAAATTTTGTCTGTAATCCCATGTAAATTTAAAGAAATGGGTGTACTCTATTGTGCTTTTTCATGCTGTTTAGAAAGGACTGAATGGAGTAATAAAACGATGTGACAAGTTAATTAAGTATTTCCATTCAATGAACCTTTTAAAAGAATCAAAATCTTGTAAGGTTCCTTGTTGCCATGC
>TU141756
CCATGTTGTTGTGCAGGGCGTGTTGTCTCTACTTAAACCGTTGATTTTGCAAGGATTACGCAGACGCATTTTCATACAACAGAACCTGCGCACCTCTGCTCCAGAAATCTTCCAAAATGAGCAACAAATGTCCAATCACTAAGGAGGTGCAGCAGTTTAAAAAGGAAAGGCTAAATAGTACTGAAGTGGTAGAAAAAAACCCTCTCCCAACGACGCAAGTAATTGAAGAAGAGAAGATAGCTTTGGAAGAGAAAGCTGCCAAAGAGCCACTCAATGAGGAGTTGGTGCAGTTTAAGACGAGCAAGCTAAGGAAGTCTATCACGAAAGAAAGTAACCATCGTCCAACTGCTGCGGaaATTGAAGCAGAGAAGAAAGCCATGAAAGAGGGGAAGAAGTAAAAGGGGAAACACCTTTTCATGATTCTTCTTGTTGAGACCTGCTCTTCCTCCATTTAGGAATCCTGTCCAGCATATCTGCCTATTcctgtgttttcatgttttattaaatgGTGTTTGGGCTGATCCTATGGGTGAAAATTTTGTCTGTAATCCCATGTAAATTTAAAGAAATGGGTGTACTCTATTGTGCTTTTTCATGCTGTTTAGAAAGGACTGAATGGAGTAATAAAACGATGTGACAAGTTAATTAAGTATTTCCATTCAATGAACCTTTTAAAAGAATCAAAATCTTGTAAGGTTCCTTGTTGCCATGC
>TU141757
CCATGTTGTTGTGCAGGGCGTGTTGTCTCTACTTAAACCGTTGATTTTGCAAGGATTACGCAGACGCATTTTCATACAACAGAACCTGCGCACCTCTGCTCCAGAAATCTTCCAAAATGAGCAACAAATGTCCAATCACTAAGGAGGTGCAGCAGTTTAAAAAGGAAAGGCTAAATAGTACTGAAGTGGTAGAAAAAAACCCTCTCCCAACGACGCAAGTAATTGAAGAAGAGAAGATAGCCATGGAAGAGAAGCTGCCAAAGAGCCACTCAATAAGGAGTTGGAGACATTTGACCAACAAGTGCTCAAAAAGACTGAAGTGCAAGAAAAAAACCCTCTTCCAACTGCTGATGTAATTGAAGAAGAGAAGATAGCTTTGGAAGAGAAAGCTGCCAAAGAGCCACTCAATGAGGAGTTGGTGCAGTTTAAGACGAGCAAGCTAAGGAAGTCTATCACGAAAGAAAGTAACCATCGTCCAACTGCTGCGGaaATTGAAGCAGAGAAGAAAGCCATGAAAGAGGGGAAGAAGTAAAAGGGGAAACACCTTTTCATGATTCTTCTTGTTGAGACCTGCTCTTCCTCCATTTAGGAATCCTGTCCAGCATATCTGCCTATTcctgtgttttcatgttttattaaatgGTGTTTGGGCTGATCCTATGGGTGAAAATTTTGTCTGTAATCCCATGTAAATTTAAAGAAATGGGTGTACTCTATTGTGCTTTTTCATGCTGTTTAGAAAGGACTGAATGGAGTAATAAAACGATGTGACAAGTTAATTAAGTATTTCCATTCAATGAACCTTTTAAAAGAATCAAAATCTTGTAAGGTTCCTTGTTGCCATGC
>XM_039813384.1
ATTCTTCCTCTAAACTTTGGGAGCCAATGACAGCCAGAGTATCAGTGTCCATGTTGTTGTGCAGGGCGTGTTGTCTCTACTTAAACCGTTGATTTTGCAAGGATTACGCAGACGCATTTTCATACAACAGAACCTGCGCACCTCTGCTCCAGAAATCTTCCAAAATGAGCAACAAATGTCCAATCACTAAGGAGGTGCAGCAGTTTAAAAAGGAAAGGCTAAATAGTACTGAAGTGGTAGAAAAAAACCCTCTCCCAACGACGCAAGTAATTGAAGAAGAGAAGATAGCCATGGAAGAGAAAGCTGCCAAAGAGCCACTCAATAAGGAGTTGGAGACATTTGACCAACAAGTGCTCAAAAAGACTGAAGTGCAAGAAAAAAACCCTCTTCCAACTGCTGATGTAATTGAAGAAGAGAAGATAGCTTTGGAAGAGAAAGCTGCCAAAGAGCCACTCAATGAGGAGTTGGTGCAGTTTAAGACGAGCAAGCTAAGGAAGTCTATCACGAAAGAAAGTAACCATCGTCCAACTGCTGCGGaaATTGAAGCAGAGAAGAAAGCCATGAAAGAGGGGAAGAAGTAAAAGGGGAAACACCTTTTCATGATTCTTCTTGTTGAGACCTGCTCTTCCTCCATTTAGGAATCCTGTCCAGCATATCTGCCTATTcctgtgttttcatgttttattaaatgGTGTTTGGGCTGATCCTATGGGTGAAAATTTTGTCTGTAATCCCATGTAAATTTAAAGAAATGGGTGTACTCTATTGTGCTTTTTCATGCTGTTTAGAAAGGACTGAATGGAGTAATAAAACGATGTGACAAGTTAATTAAGTATTTCCATTCAATGAACCTTTTAAAAGAATCAAAATCTTGTAAGGTTCCTTGTTGCCATGCAGGAAATGTTCTAAAAACACatgattttgtttcttttataataaaaatgGATCTCAAACTTTGA

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU141755 False 815 lncRNA 0.40 6 17142146 17151568
TU141756 False 712 TUCP 0.40 5 17142146 17151568
TU141757 False 846 lncRNA 0.40 7 17142146 17151568
XM_039813384.1 True 959 mRNA 0.39 7 17142082 17151616

Neighbor

gene id symbol gene type direction distance location
zgc:66447 LOC103370289,LOC101476930 coding downstream 3871 17126345 ~ 17138211 (-)
znf711 znf711,zfx coding downstream 16178 17118465 ~ 17125904 (-)
kctd12b LOC107396469,LOC101170105,LOC102309695,LOC106928388 coding downstream 28501 17098532 ~ 17113581 (-)
ogt.1 ogt coding downstream 117355 17008128 ~ 17024727 (-)
gcna NA coding downstream 134688 17001410 ~ 17007394 (-)
LOC120566760 NA coding upstream 2522 17154138 ~ 17158517 (-)
prps1b prps1,LOC104923196,LOC103391169,LOC101476181 coding upstream 7883 17159499 ~ 17164212 (-)
LOC120566998 LOC103359155,LOC104923198,LOC101474624,LOC106953605 coding upstream 190525 17342141 ~ 17343959 (-)
LOC120566521 LOC103359160,LOC108240568 coding upstream 199638 17351254 ~ 17357300 (-)
LOC120567258 LOC103359155,LOC104923198,LOC101474624 coding upstream 291606 17443222 ~ 17445060 (-)
G105577 NA non-coding downstream 23818 17117751 ~ 17118264 (-)
G105549 NA non-coding downstream 86460 17052505 ~ 17055622 (-)
G105443 NA non-coding downstream 386524 16755336 ~ 16755558 (-)
G105436 NA non-coding downstream 452777 16689083 ~ 16689305 (-)
G105435 NA non-coding downstream 453492 16688056 ~ 16688590 (-)
G105578 NA non-coding upstream 555 17152171 ~ 17153593 (-)
G105598 NA non-coding upstream 172844 17324460 ~ 17324955 (-)
G105597 LOC104923197,LOC104943958 non-coding upstream 182788 17334404 ~ 17335952 (-)
G105749 NA non-coding upstream 603598 17755214 ~ 17755915 (-)
G105759 NA non-coding upstream 677006 17828622 ~ 17831148 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other downstream 178546 16957643 ~ 16963536 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other downstream 467227 16524356 ~ 16674855 (-)
unc5a unc5a,LOC102788949 other downstream 1038288 15960197 ~ 16103794 (-)
hnrnph1 hnrnph1,LOC102791917 other downstream 1270133 15866060 ~ 15871949 (-)
tspan17 tspan17,LOC103361971 other downstream 1522974 15598343 ~ 15619108 (-)
frmpd3 frmpd3 other upstream 15280 17166896 ~ 17256932 (-)
nexmifb kiaa2022 other upstream 370525 17522141 ~ 17577811 (-)
kif3a kif3a other upstream 516468 17668084 ~ 17748547 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other upstream 631944 17783560 ~ 17795391 (-)
LOC120566288 NA other upstream 705468 17857084 ~ 17859755 (-)

Expression


Co-expression Network