G105784 (gabrb2,LOC102788768)


Basic Information

Item Value
gene id G105784
gene name gabrb2,LOC102788768
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17928832 ~ 17933470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142063
tttgcaTGCCCTCCAAAAGCTGGCCACAGGATGCCGCCGGGTTTAATGGACGTAGTAGAGCCAGTAGACGACGTTGAAGAAGGAGAAGACGGTGGGGAAGATCATCCTGGACCATTTATCGATAGAGTTCACGTCAGACAGGTCTGGGATATTCACCTTGAGCTGGGAGGCCCGTCTTCGTAGGCGCGACTTCTTCTGGGCGTGGCGCTCCAAGGCGCTATGGCCATAGTTCTGGCGGGCCATGGCTGCCCTGCGGTACTGCAGCGTCGAGCTATCATAGGCCAGCATGGTGTTGCGGGGGTCTCCAGGTGCTCCCAGGCCCCGGGACagatcaccaccaccacccatcTCATTCTTCATCTCCAGGGTGCTGAACAGGATGTTGTCGTCGGGAGTCATCTGTATCAGGGTGTAAAAACAGGTGGAGCCATGAGAAGTTACTGCCACGGGgaaatgtaGTCTCAGCTTCTCGTTATTGGCCGTGGCTGCTTTCTCAGCTGCCTTCTTCTGTCGCTGGGGGCCCTGGCCGAAGAAGATGTAGTTGACGAAGGCGTACTCCAGCAGGGCCAGGAAGACAAACACAAAGCAGCCCATCAGGTACATGTCAATAGCCTTCACGTAGGGGATCTTTGGGAGCGTCTCTCGCAAGTGGGTGTTGATGGTGGTCATGGTCAGCACCGTAGTGATCCCTGGATACCACAGGTCACACGTTTAGAAAGAAAGTGAAGTCTTTAGACGCTGTAAGACATTTTTACCATCATCTGTACAGTAAAAAATATATGGTTGTCAATTTGACTAATAGTTATGTTAAATTTTTAGCCATGCAAGCTGCATGGCTAAAGGAATGGAACTGTCCATCTGTCGGTGCAACactttgatccagactgaaatatctctactcaactactggatggattaagatgacattttgtacaaacattcatggtccccagaagatgaatcctgactttggtgatcccctgacttccCCTATAGCACCACcagcaggttgacatttgtggttttgagtgttGGTTTGATGGTCTTGAAATTTGCTGAATTTCCACTGCGTGGCACAGCTCGACTCGCTTttggtaccaggtacttttcaTGATTTCCTTTTCCACTGCAGATAGTACCCCCTCAATGCTGGCGGGATTCTTAGCTGATCGTCATAGCACTGCTGTGTGAAACTGCCTTGACATCATCTTCaatgcaacacaaacacacacacaaaatggtgGGCTTGTGCAGATTGTCCCATGTCCcaagtgacgattctctccgaccagtTAGTGGTCTGTCgtgttttaactccaccttGTAGTATGGGCTCAGCCCGCTTGGAACTGCAACCGAGGTGATACCAAGAAAAATACCAGTTACTATCCACAACCTTTGCCAAAAAAGAGCAGTTCCAAGCGAGCCGAGTCAAGCCGTGCCGTGCCATGCAGTGGAAATGAGTCCTGTGCCCCTCAGGATGAATCATATTCATTTTGGTGAtttttactttgtgtttagtaaTTAGAAAATGTTAGTAAGCTAAAATAAGTTGGGGAacataaacattatacctgctaaagtCAGCCTGCATTATCCATGAAATGCAGTATGTGTCCGAAACCTACATTTACTGCTCACTATTCAGTAAACAATTGGGTGTCCATTATAGAGGCAGTATGGAGTGAAAAAGGGAGTCTTGTTTCATTAGAATTTGCCAAACATCGAAATGACTGAGATCAGGTGCTCATCTTCAAAGGACTTGTGAATATAAGCATTCatgtttatcacaaacattataggctatagcatttatttatagCCATCAGACAGGCCTGAATTAATGTGAACTCATTTGAATATAACGATCCCTCGAAACCTCCTGAGactgaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcataagGTTTATATCCAATCATGTACTCAAATGCCCATGGAACAAACGCTATATAAAAGCACACTGTAAACATCTGCTATTAGTCACAGAACAATTCACCTGCTTTTTTTACATACCCACTATGTGTTTGATACATTAGTCATCTGCATGCACAATCTGCATTTGGTCAGATTCACACGTATTATAAATAACCCAGGAGCCAGCAGTGTCATCGTAGCATGGAGCCTCATCTCTCATTGGCTGCGCTCGCTCACTTGTACGTTCTCAGGACGCTGAGCAGAGGCAGATCTTTAAATCACGTTACCCTCTGAACGCACCGTCTGGGGCTCCAACCCCGCATGTATCCCACTCCAGAAAACAAATGGTGTGTGACAACAACCGCACACATAAAGCTCAAAGCCATTTCCTCTGCTGCTCTGACCTGTCAGACTCAAGTTTAACACTAAAGGGAGCTTTCATGTCAGTGTCAGTGGTAGTTTGATATTGgtgtaaaaacattaaaatgtgtaAGGCAAATTTAAGCAAATGTTGCCACCTCTTGTTCGGCTGAAATTTAGCCGTGATCTGGCTCTGATAAGCTGGGATCTCCGACCAATGTGAGGCTCcgatagacagacaggcagagagaaagacagcacGCTTCAAGGTCGAGCTGCAGCGCATCTCGCTCTGCATGAGTCATGCATTTAGTCATCTCTGAACAACAGACATTTAGCCAGGCAGCCTATCACACACTGCTATCACTCACATGCTTAGAGCTAATGAGAAAACAAGTAAATGCTGGGAAAATAAAGAGTCAAAACAGAGATCAGGCAGACGCAATTATGTATAGATCTAAAGCAAGGCTCAAAGTATGTTAAATGGCTCTTTTTATGCTCTGTTATCATTTAGCTTTGGGTTATATCCCAGGGTCACTGTTCAGCAGTGGCGAGGCGATCCTACCCAGGGCCACTCTGGCAGCTGAGGCGTCGTAGTTGATCCAGAAGGAGACCCAGGAGAGGATGGTAATCAGGATGGAAGGCATGTATGTCTGCAGGATGAAGTAACCAATGTTCCTCTTCAGTTTGAAGCTGAGGGACAGGCGGGGGTAGGAAC

Function

symbol description
gabrb2 Contributes to GABA-gated chloride ion channel activity. Involved in gamma-aminobutyric acid signaling pathway and inhibitory synapse assembly. Located in plasma membrane. Implicated in autistic disorder and developmental and epileptic encephalopathy 92.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142063 True 3107 lncRNA 0.46 2 17928832 17933470

Neighbor

gene id symbol gene type direction distance location
sowahab NA coding downstream 57263 17870202 ~ 17871569 (-)
gdf9 gdf9 coding downstream 64678 17860860 ~ 17864154 (-)
hspa4b hspa4 coding downstream 72456 17847776 ~ 17856376 (-)
gnpda1 LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048 coding downstream 82278 17843883 ~ 17846554 (-)
LOC120566774 LOC104938341,LOC103359140,LOC104943540,LOC100701639 coding downstream 85461 17834717 ~ 17843371 (-)
fbxl3l NA coding upstream 26409 17959879 ~ 17968780 (-)
LOC120567416 LOC104938463,LOC103391208,LOC103359220,LOC100705713,LOC105026079 coding upstream 62505 17995975 ~ 18000829 (-)
LOC120566259 adra1b,LOC104967953 coding upstream 147734 18081204 ~ 18090466 (-)
egr1 egr1 coding upstream 259747 18193217 ~ 18197415 (-)
kdm3b kdm3b coding upstream 382343 18315813 ~ 18343775 (-)
G105769 sept8 non-coding downstream 46838 17877032 ~ 17881994 (-)
G105768 NA non-coding downstream 52537 17874836 ~ 17876295 (-)
G105759 NA non-coding downstream 97684 17828622 ~ 17831148 (-)
G105749 NA non-coding downstream 172917 17755214 ~ 17755915 (-)
G105597 LOC104923197,LOC104943958 non-coding downstream 592880 17334404 ~ 17335952 (-)
G105806 atp7a non-coding upstream 44842 17978312 ~ 17980298 (-)
G105820 NA non-coding upstream 81981 18015451 ~ 18015927 (-)
G105827 LOC108238064 non-coding upstream 88967 18022437 ~ 18023896 (-)
G105834 c1qtnf2,LOC103471225 non-coding upstream 99937 18033407 ~ 18035248 (-)
G105835 NA non-coding upstream 101912 18035382 ~ 18035757 (-)
LOC120566288 NA other downstream 69077 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 133441 17783560 ~ 17795391 (-)
kif3a kif3a other downstream 180285 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 351021 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 671900 17166896 ~ 17256932 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 53726 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 133955 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 352488 18285958 ~ 18314415 (-)
LOC120566257 NA other upstream 754318 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 1084282 19017752 ~ 19044951 (-)

Expression


Co-expression Network