G105806 (atp7a)


Basic Information

Item Value
gene id G105806
gene name atp7a
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17978312 ~ 17980298 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142089
TGAGCAGCAATGGCTCGTGCTGTCTTGCTGTTGTCTCCGGTCATCAGCACAACTTCCAGACCCATGCTGGTCAGAGTGCGGACTGCCAGCTCAGCCTCTGGTTTCACTGTGTCTGCTATGGCTATCATCGCACACAGCAGATGTCTACAGCTACTAGAACAGCAGTGCGTCCTCTGCGCTCATGCTCCATCATTGCCTCATCTATATCTGGTTTGATCTGCAGGCAATTCCTCCTCATCCACTCTCTATTGCCAATCAGGACAACATAGGAGGCTGTCTGGACAAGGCCTACACACATGGAGATCATTTGAGTTAGACAATAGCaagtaaaacaaacatttaatgcAACTTATCATTAACTACCTAAATTCAGAATTTAAAGACCAAATACAAATGTTTCAGTATTTCTGCtgaatacacaaatacaaaaatatgtttccCAACATACTTAGTGGGTGTGGGTCCATGATAAGTGGATGGGAGCTGGTGGACATCCGGGTATCACTGATCTGGACCAGAACAGTGTTGCGCTGGTTGTTGTCCTCACTGTCGCTGTCTGCCTGTATCAGCAGGTTCTCGGTGTTGCTGACCTGACATCGGATGCCACAGCCCGGCACTGCCTGAAAGTCGGTGCACGCGCCAAGAGACTCTGTGCCAAGCTCCTTCACACAGAGAGTAATGGATGTTTAACAACATATTTCTGGAGCATATCGAGGATCATCGGGAGGATCTGAGATTTTCCCCAGAGCGcagtagcctcgtgagaccgtcctgatctcacaagctccagttttctactcgcagatcagtctggcatcttgagatagagaaaatttggagccgttcgccaaacaaccgaccaatcagcgttggttttgaggcgggtttaggtgtgacgcaacaagaagcgactgttagtctaaacaacatggcagcttccacggatgagaggagcgtagctatcgcgcaagttttatccaaattataAAGTATTCcatcattgaaagaagagcaaaaaatggcactggaggcttttctcggaggaaaagatgtttttgctcttctcccgactggtttcggcaagagtttgatctgattggttgatttggcccgtctatcaccaacataggtggtgatagacagatggtttatccaatcagctaaccagtattttcgccccttcccaaaagttcaccaacggaaagttcccagatggatatgccgagcaaatgcgaagcaatccatctggcggagtcaggttaaaaGTGCAGTGCTGGGTTGAATTTGAGGTACAGACCAACCTGTTTGCAGTATTTGGTGATAGCTGCTCCCAGAGGATGTTCACTGTTGTTCTCAGCGGTGCCCACGATGGCCAGCAGTCGGGAACGAGGCATCTTGTTCCCCTCCACAACTATCTTGACTTCGACAACCGTCGGAGCACCATACGTGATGGTCCCAGTCTTATCAAACACCACCGTCTGGATCTGCAAATAAAAGGAGATATGATCAAATCAAAAACAGAAATACTACCAGGCTGTATTTAATCAGAGTAATATCTAGACTAATGTGGTTTCGTAAGCCCAGGAAACCAGAGCCATTTCATAATGTTCGTGTGTTACATAATTGGCTGACTACATAGGGGTGTCAGAACATCATCAACACACCTTATGCGCCATCTCAAGTGGCTCTCCTCCCTTAATCAGGATGCCATTTTGGGCTCCAACCCCTGTGCCCACCATGACAGCTGTCGGGGTTGCCAAGCCAAGGGAACAGGGACATGCGATGCATAATACAGTTATGGAGGCCTGAAAGGCGAAGCGAATCACTGCCTCTGCCCTGGAAATGCTCTTGTCG

Function

symbol description
atp7a Predicted to enable P-type divalent copper transporter activity. Acts upstream of or within response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in perinuclear region of cytoplasm and trans-Golgi network. Is expressed in digestive system; gill; locus coeruleus; neural tube; and notochord. Used to study Menkes disease. Human ortholog(s) of this gene implicated in Menkes disease; X-linked distal spinal muscular atrophy 3; cutis laxa; and occipital horn syndrome. Orthologous to human ATP7A (ATPase copper transporting alpha).

NR:

description
PREDICTED: copper-transporting ATPase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142089 True 1854 lncRNA 0.48 2 17978312 17980298

Neighbor

gene id symbol gene type direction distance location
fbxl3l NA coding downstream 9532 17959879 ~ 17968780 (-)
sowahab NA coding downstream 106743 17870202 ~ 17871569 (-)
gdf9 gdf9 coding downstream 114158 17860860 ~ 17864154 (-)
hspa4b hspa4 coding downstream 121936 17847776 ~ 17856376 (-)
gnpda1 LOC104943541,LOC104938351,LOC101467942,LOC102791355,LOC102296048 coding downstream 131758 17843883 ~ 17846554 (-)
LOC120567416 LOC104938463,LOC103391208,LOC103359220,LOC100705713,LOC105026079 coding upstream 15677 17995975 ~ 18000829 (-)
LOC120566259 adra1b,LOC104967953 coding upstream 100906 18081204 ~ 18090466 (-)
egr1 egr1 coding upstream 212919 18193217 ~ 18197415 (-)
kdm3b kdm3b coding upstream 335515 18315813 ~ 18343775 (-)
spon2a LOC103359201,LOC104954676,LOC104922704 coding upstream 365095 18345393 ~ 18361658 (-)
G105784 gabrb2,LOC102788768 non-coding downstream 44842 17928832 ~ 17933470 (-)
G105769 sept8 non-coding downstream 96318 17877032 ~ 17881994 (-)
G105768 NA non-coding downstream 102017 17874836 ~ 17876295 (-)
G105759 NA non-coding downstream 147164 17828622 ~ 17831148 (-)
G105749 NA non-coding downstream 222397 17755214 ~ 17755915 (-)
G105820 NA non-coding upstream 35153 18015451 ~ 18015927 (-)
G105827 LOC108238064 non-coding upstream 42139 18022437 ~ 18023896 (-)
G105834 c1qtnf2,LOC103471225 non-coding upstream 53109 18033407 ~ 18035248 (-)
G105835 NA non-coding upstream 55084 18035382 ~ 18035757 (-)
G105967 LOC100708117 non-coding upstream 569812 18550110 ~ 18551684 (-)
LOC120566288 NA other downstream 118557 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 182921 17783560 ~ 17795391 (-)
kif3a kif3a other downstream 229765 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 400501 17522141 ~ 17577811 (-)
frmpd3 frmpd3 other downstream 721380 17166896 ~ 17256932 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other upstream 6898 17987196 ~ 17995350 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 87127 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 305660 18285958 ~ 18314415 (-)
LOC120566257 NA other upstream 707490 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 1037454 19017752 ~ 19044951 (-)

Expression


Co-expression Network