G105827 (LOC108238064)


Basic Information

Item Value
gene id G105827
gene name LOC108238064
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18022437 ~ 18023896 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142119
CAAAACAAATGTTAGTTATATCTGTGATGCATTTAGAGATTGTAGAATGTCATTACAGTACTGTATTTCTCCTGGCCTTCGATCCTGAGCTCTGATCCACCTGTgtataaaaaactgtaaatcaaaGAAAGAACAGGCTGGTTTTGTAGCGAGAAGAATCATCGAAAGACTTTAGGACTCCAGTGGGTTTATTTTTGCATTCCTCAGAAGCACCAAGCAGGTATTGTTGTGCCCAACGGTAACATGGATCAGTGAGAACACTATTTTGAAAGACGAGGTTAAGACAGTAACAACAACATAAGATGCCCTTATGATGACTGGTCAGGTGAAacttctcacctttttcttaTATTCCAAACACTAAAAAAAGGCCAAATAATGTAAACAATGTTGAGAGAACAAACAAAAGAACATAACAGCACcagacacaaataaacataCTGACAGAAAGTATAAAGAGACGGACTGAGTCAGTCCTCGAGCCGTAGCACCAGTACACATCCCCACTGTCAGTCCAGCAGCCTCGGGATGAGAAGGCAACGCTCAACCAAAGTGAAGGCAGTGTCACAGTGTTCAGCATCCTCATCCACATAATCACCCCAAGCATCATCCCCATCCCCTCCTTCGTCCTCCTCTTCGTCATCATCGCCTTCCTCCAGAAGATCACCTCCATACAGCGGctcatcctcctcatcttccactatctccatctcctccatgtcgtcgtcctcttcctcctccgctTCTtcatcgtcgtcgtcgtcgtcttccacctcctccatctctaACCCACACACCTCCCCGTCCTccacctcaccgtcctctctctcctccttggAGGAGGTAGGAGTGGAAAACCCTCTCCCTTCAGTCCTGTCTGTGTGGTATGACCTGCTGGAGGGGACGAAGCTGGAGGTAGCAGTCTTTGTGTTGATATagagacgaggaggaggaggaggcggccCCTGCCTGGCCGACGCAGCCTGGCCAGCAGGGGAAGTGATGGCAGCAGAACTGGCTCCTCTGGAATCTGGGCCTTGCGAGAGAGCGACAGGCTCAGCCATGGCCCCAGGCCTCACGGAGGTCATGTTGGGCACATATTCACGAATCTCCCCCGGCTCCAGAGGGTCAGGCCCACAGGGGTCGTGTTCACTGCAGGACAGCTTCCCGTCCAGCTTGGAGATGAAGAGCATGCCTTCACGATGCTCCTTACAGTAAGAGCTGGGGCACATCTCACAGAACGAAGCTGCCTCTTTACCACAGACGTCACACTGGTGCCATGGACACTCCCAT

Function

NR:

description
PREDICTED: histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142119 True 1293 lncRNA 0.50 2 18022437 18023896

Neighbor

gene id symbol gene type direction distance location
LOC120567416 LOC104938463,LOC103391208,LOC103359220,LOC100705713,LOC105026079 coding downstream 21608 17995975 ~ 18000829 (-)
fbxl3l NA coding downstream 53657 17959879 ~ 17968780 (-)
sowahab NA coding downstream 150868 17870202 ~ 17871569 (-)
gdf9 gdf9 coding downstream 158283 17860860 ~ 17864154 (-)
hspa4b hspa4 coding downstream 166061 17847776 ~ 17856376 (-)
LOC120566259 adra1b,LOC104967953 coding upstream 57308 18081204 ~ 18090466 (-)
egr1 egr1 coding upstream 169321 18193217 ~ 18197415 (-)
kdm3b kdm3b coding upstream 291917 18315813 ~ 18343775 (-)
spon2a LOC103359201,LOC104954676,LOC104922704 coding upstream 321497 18345393 ~ 18361658 (-)
ctbp1 LOC107375331,LOC102204710,LOC101481404,LOC102780827,LOC100707048,LOC104922705,LOC103359200 coding upstream 343275 18367171 ~ 18382380 (-)
G105820 NA non-coding downstream 6510 18015451 ~ 18015927 (-)
G105806 atp7a non-coding downstream 42139 17978312 ~ 17980298 (-)
G105784 gabrb2,LOC102788768 non-coding downstream 88967 17928832 ~ 17933470 (-)
G105769 sept8 non-coding downstream 140443 17877032 ~ 17881994 (-)
G105768 NA non-coding downstream 146142 17874836 ~ 17876295 (-)
G105834 c1qtnf2,LOC103471225 non-coding upstream 9511 18033407 ~ 18035248 (-)
G105835 NA non-coding upstream 11486 18035382 ~ 18035757 (-)
G105967 LOC100708117 non-coding upstream 526214 18550110 ~ 18551684 (-)
G106057 NA non-coding upstream 686146 18710042 ~ 18729032 (-)
G106066 NA non-coding upstream 974644 18998540 ~ 18999875 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other downstream 27087 17987196 ~ 17995350 (-)
LOC120566288 NA other downstream 162682 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 227046 17783560 ~ 17795391 (-)
kif3a kif3a other downstream 273890 17668084 ~ 17748547 (-)
nexmifb kiaa2022 other downstream 444626 17522141 ~ 17577811 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other upstream 43529 18067425 ~ 18068492 (-)
reep2 reep2,LOC102782871 other upstream 262062 18285958 ~ 18314415 (-)
LOC120566257 NA other upstream 663892 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 993856 19017752 ~ 19044951 (-)
LOC120566717 LOC102215832 other upstream 1192093 19215989 ~ 19250436 (-)

Expression


Co-expression Network