XLOC_000047 (rap2ab)


Basic Information

Item Value
gene id XLOC_000047
gene name rap2ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2222363 ~ 2240119 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000096
GCAATGCGCGAGTATAAGGTGGTGGTGCTCGGCAGCGGAGGGGTCGGCAAATCCGCGCTCACCGTGCAGTTCGTGACCGGGACCTTCATCGAGAAGTACGACCCGACCATCGAAGACTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCCGGCACCGAGCAGTTCGCGTCCATGCGGGATCTCTACATCAAGAACGGGCAGGGCTTCATCCTGGTCtacagcctggtcaaccagcagAGCTTCCAGGACATCAAGCCCATGAGGGACCAGATCATCCGGGTCAAGAGGTATGAGCGCGTGCCTGTGATTTTGGTGGGCAATAAGGTGGACCTGGACAACGAGCGCGAGGTTTCGTCGAGCGAGGGTCAGGCTCTGGCTGAGGAATGGGGCTGTCCGTTCATGGAGACTTCGGCCAAGAGCAAGACTATGGTGGACGAACTGTTCTCGGAGATCGTCAGGCAGATGGACTACGCTTCTCAGCCGGATAAAGAAGACCCGTGCTGCTCCTCCTGCAATATACAATAA

Function

symbol description
rap2ab Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2A (RAP2A, member of RAS oncogene family).

GO:

id name namespace
GO:0032486 Rap protein signal transduction biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-116 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2A (RAP2A, member of RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000040246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000096 True 555 mRNA 0.58 2 2222363 2240119

Neighbor

gene id symbol gene type direction distance location
XLOC_000046 mbnl2 coding upstream 4502 2101541 ~ 2217861 (+)
XLOC_000045 slc5a3a coding upstream 195263 2025085 ~ 2027100 (+)
XLOC_000044 NA coding upstream 198718 2023409 ~ 2023645 (+)
XLOC_000043 NA coding upstream 216731 2001716 ~ 2005632 (+)
XLOC_000042 si:ch211-132g1.7 coding upstream 222006 1941031 ~ 2000357 (+)
XLOC_000048 kpnb3 coding downstream 20288 2260407 ~ 2299553 (+)
XLOC_000049 CR352215.1 coding downstream 35486 2275605 ~ 2275742 (+)
XLOC_000050 farp1 coding downstream 61839 2301958 ~ 2444210 (+)
XLOC_000051 CR352215.2 coding downstream 162984 2403103 ~ 2403224 (+)
XLOC_000052 gpc6a coding downstream 472837 2712956 ~ 3036019 (+)
XLOC_000034 NA non-coding upstream 603049 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 644112 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 861532 1358731 ~ 1360831 (+)
XLOC_000053 NA non-coding downstream 1478547 3718666 ~ 3720603 (+)
XLOC_000054 CABZ01063288.1 non-coding downstream 1519805 3759924 ~ 3760034 (+)
XLOC_000056 FO744838.1 non-coding downstream 2357941 4598060 ~ 4680477 (+)

Expression


Co-expression Network