G106378 (LOC108242387)


Basic Information

Item Value
gene id G106378
gene name LOC108242387
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19945655 ~ 20052690 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142887
GCCAGATTCCAGGAAGTGTATGAAGACTTATCTAACACGTTTTCAATGtgcacaattacatttttacaggtaATGCATGGTTCATTTTCTGCGTATAACTTACAATAAATGAATAGAGTCAAATTATCAAGCGCTGATATGACAAGTGGCTGCAATGGTCACTTTTCAGTGGACTTGGTGGACAATTACGAATTACATCTGTGTGTAGCACATGTCAGATATTTTTCCCATACCTGCAGGGTAGAAGCTGCTGAGTCACTAGTATCTGTCAGTCCTGTGCCTCTTGGTAAACTGGACACGATGTATCTGGAGCCCTTTGGCACAGGCTGCCTAACCACCAGCTTTCCTTTCCTGGTCTCTGCTAGAAACAGACTGTACCAGTAGGCATCGTTGGAGACCAGAGTGGAATCTGCGATGGTGGAGTTCCTCTCACTGATCACACTGTTCCTGCAGGGAGGAGCCGCTTTGCTGGGCTTGGGTTTCTGACACTTGAGCACGATGGTGACCAATATGGTGATCAGCAGGAGAAACGACACCGAGCCCAGACCGATGACCAAATACAGGTTTAGGTCTGAAAAGATGTCATATTCCAGAGGCACCTCCGTCATGTCAGAGTAGGCCTTAACGACAGTCTCCACTGTGGACAGCTTGATGGTGACTGTAGCAGAGAGAGCAGGCTCCCCGTTGTCCTTGGCAACAACAACCAGTCGCTGGTGGCGCGGGTCTCTGTAACTGAACATCCTCATAGTCCGGATCTCTCCGTTGTACTGGTCCAGACTGAACAAGGTGGCGTCAGTCACCTGGAGAAACTGGTAGGTAATCCGAGAGTTGTGCACCGAGTCGGTGTCTAAGGCTATCACCTTGGCAACCAGAGAGCCTTTATCGGTGGATCTGGGGATCTTTTCCTCCACCACCGAGCCGTGCGCGCGCCAGGGAGAGACAATAACCGGAGCGTTGTCGTTCTGGTCCACAATGATGATGTGGACCGTCACGTTACTGCTGAGTGGAGGAGAGCCAGAGTCTCTGGCCTCGATGTGGAAAAGAAACTCCTTCTCGATCTCATAGTCAAACGTTTTTAGTGCGTAAAGATTACCGTTCTCTGGATTGATGGAGAACAGCATGGACATGGAGGTGTTGGCTATCTCCTTCTCTAGGATGAAGTAAACTAGGTACTGGTTTTCGTGGAGGTCAGGGTCAAACGCAGTGAGGGAACTGAGCAAGGCCCCAGGTGCGTTATTCTCCATTACGCGTATGGTATAAAATGACTGAGGGAACTGTGGGACATTGTCATTAACATCCAGCAGCTCTAACGTCATAGTTTCATTGTCCGATAAAGGAGGAGAACCTCTGTCTGTCACAGTGAACGTGATGTCATATTCTGGAACCTTCTCACGGTCTAATGGCTCTGACACTACTAATTCATAATAGTTATCTGAGGACTCCCTCAGTTTGAAAGGCATATTATCTGGAATATGAAGATCAACCACTCCATTGTCACCTGAGTCTTTATCACTGACACTAACTACTGCTATCACTGTGTCTAACTCTGTGTTTTCATTGACTGGACTCTGAAATGATTTAATAGATAATTCTGGATGGTTGTCATTCATGTCTTCAACCAGAATCTTTATAGTACATTGTCCTGATAAACTATTGGCTCCTTTATCAGTAGCTATAACTTCCATATCATAAATCTTAAAATCTTCATAATTTAACACTCCTTTTACAGTAATCTCACCCGTGTTTGGATTTAAATTAAACGTTTCTTGCGTTTTCTCCGATGTATATAAACTGTATGAGTATATCATATCAGAATTTGTCCCTTTATCTAAGTCCGTCGCATTGAGATGAATAACAAGACTTCCGATCGGAGAATTTTCCATTACACTGATTTGGTAGCTCTCTTCTTCAAATGTAGGGGCGTTGTCATTTGTGTCTAAAACATGAACAATAATGCTGGCAGTACCAGAACGAGATGGCATACCGCCATCTACAGCTGTAAGTATTAAATAATGAACAGCCTGCTGCTCTCGATCCAATGTCTGTTTCAGGATTAAATCAGCAAATTTGGATCCATCTCTTCCAGTCTGAATTTCTATTGTGAAATAATCACTTTCGCTCAAATGGTATGTTTTCACAGAGTTTGAACCAACGTCTGGGTCAACTGCATTACTCACAGAAAAGCGCTCACCAGCCTGCGTAGCCTCTGAAATGTCTAAATCTATCGTGTCTCTTCGAAAATGAGGTGCGTTGTCATTTATGTCCATTATCTCTAATTCAATATAAAATATTCGTTTTGGGTTTTCAATTATTGCTTCCATTTTCAGATAACAGGATGTCTTGGCGGGACATAGGGACTCTCTGTCAATTCTTTCAACAATGTAAAGCTCCCCTGTTTCTTTGTTCACGTCCAGATATTTCCGATTGGCAATAATCTCTATGCGCATTTTCCGTTCGACTAATGTCTTCACATCTAGTCCCAAATCCCCAGCTAGATTTGCGACGACAGAGTCTTCTTCGAGTTCCTCGGGAACAGAATAGTGTGATACAGCCGACGTGGAATTTAAGGTGGCAACAAAAAGAAGAATTGTCGACACATACCTTTTCCAATATTGAGAACAGACCCAGCCTTCCATTGTTACCCCagatctttgttttcttcaacgTGGTCTAAATTATTCCGCACAACATGTAGGACAACTGTGAAGCTTCAGTCAAATTCCTAAAAGGAATGCCAGTAGAGACACTGAGAGATCCTTCAGATCCAAATTCACTCAGCACCAGGAGCTGTCCATTCGTCGTTTTCTCCGTTTCACTTCAATGATGACTGCCAGGGCGACCGTGATGTCGCAAGAGCATATGACTGGGGAACAGCGACGCTGCGTGCAGGAAGGAGTACCTCTCATCAGCGTTTGTTATATGAACATTTAAATTACCTTTTGTGTACCACGACTCAACCTCAAACCATAACATATTATTTACACGTGGGAGTTCTTTTAATCGTCTTGTGCTGCTGGTATGGATTATGGtcagttttagttttctttttcttaaaatttTTCGTTTTtttgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgataaataaa

Function

NR:

description
PREDICTED: protocadherin alpha-C2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142887 True 3216 lncRNA 0.44 4 19945655 20052690

Neighbor

gene id symbol gene type direction distance location
LOC120566486 NA coding downstream 193948 19741886 ~ 19751707 (-)
LOC120566528 NA coding downstream 218364 19723502 ~ 19727291 (-)
spock1 spock1,LOC102785053 coding downstream 246886 19598361 ~ 19698769 (-)
dele1 kiaa0141 coding downstream 367809 19569535 ~ 19577846 (-)
LOC120566455 LOC100699740 coding downstream 376558 19528422 ~ 19569097 (-)
LOC120566601 diaph1 coding upstream 533292 20585982 ~ 20699203 (-)
LOC120566290 LOC104961544 coding upstream 648852 20701542 ~ 20703679 (-)
trpc7b trpc7,LOC101475915,LOC100711831,LOC102778756 coding upstream 663137 20715827 ~ 20770031 (-)
dock2 NA coding upstream 761788 20814478 ~ 20834647 (-)
LOC120567463 dock2 coding upstream 820167 20872857 ~ 20924459 (-)
G106349 NA non-coding downstream 88288 19857096 ~ 19857367 (-)
G106303 NA non-coding downstream 388083 19477168 ~ 19557572 (-)
G106259 NA non-coding downstream 495531 19340494 ~ 19450124 (-)
G106276 NA non-coding downstream 549661 19394810 ~ 19395994 (-)
G106248 NA non-coding downstream 624349 19320263 ~ 19321306 (-)
G106414 LOC103375287 non-coding upstream 27356 20080046 ~ 20092084 (-)
G106426 LOC104959913,LOC104952413,LOC102308212,LOC102796308 non-coding upstream 103646 20156336 ~ 20160484 (-)
G106428 NA non-coding upstream 127528 20180218 ~ 20182153 (-)
LOC120567246 NA non-coding upstream 187798 20240488 ~ 20241710 (-)
LOC120567248 NA non-coding upstream 218549 20271239 ~ 20272407 (-)
tlr1 LOC104951710,LOC102197886 other downstream 463030 19477930 ~ 19482625 (-)
tomm5 NA other downstream 508728 19435839 ~ 19436927 (-)
LOC120566717 LOC102215832 other downstream 695219 19215989 ~ 19250436 (-)
rgs14b rgs14 other downstream 900704 19017752 ~ 19044951 (-)
LOC120566257 NA other downstream 1254245 18687788 ~ 18691410 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other upstream 178218 20230908 ~ 20233924 (-)
LOC120566885 ppp2r2c other upstream 1023067 21075757 ~ 21110067 (-)
G106728 mif other upstream 1075148 21127838 ~ 21130970 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other upstream 1126162 21178852 ~ 21187653 (-)
G106988 NA other upstream 1737563 21790253 ~ 21790725 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007637 si:ch73-233f7.3 coding NC_007125.7 CM002898.2 2362347 ~ 2364761 (-)
rainbow trout (Oncorhynchus mykiss) G1210738 LOC106604818 non-coding NC_048578.1 CM023232.3 7902361 ~ 7910817 (+)