G106426 (LOC104959913,LOC104952413,LOC102308212,LOC102796308)


Basic Information

Item Value
gene id G106426
gene name LOC104959913,LOC104952413,LOC102308212,LOC102796308
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20156336 ~ 20160484 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142951
GTTCTGGTAAAAGTGTCTCCTCCGTTAATACTGATCAGCTCAGCATCTACAGGCGGAAACGGTGCGGGGAAAACCACTACGTCACTCTTCAGCGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGACTTAGAGTAAGACCAGCTCCCGTCAGGGTGGGTGGTGATCATTGGGGCGCTGTACCTGCTGAAACTGCCGTCTGTCCTGTGGCATCTGACAGCTATTAAACTGATGAGACTCAGCAGAAAGATCACTGACACCGACACGATGGCGATCAGCAGATACAGGTTTAAATCAGAGAAGCTCTCCTCCTTTATGGGCACGTGTCTGAACTGAGTCTGgatgtcagctgtgctttcaACCACCACCACATCAATAGACACAGTAGCTGACAGGGAGGGTTCTCCGTTATCAGAAACCAACACCACCAAGGGGTGAGTTTTCAGGTCATTGTCACTCATTCTCCTCTTAGTCCTGATTTCTCCGGTGCTGGTTCCGATCCGGAAGAGGTTGTTTCCTTTGGGCTCAGACAGGTGATAAGAAAGCAGCGCATTGTATCCAGAGTCTGCGTCTACAGCCCTGATCTTTGCCACAAAGTATCCCGCTTCAGCAGAATAGGGGATGCTCTCACTGTTAACGGAGCCGTGCTCAGAGTAGGGCGCGAGAATTGTtggattattgtcattttcatcCAGAATTAAAACGTTCACAGTCACGTTGCTGCTGAGCGGAGGAACACCAGAGTCTGTGGCCTGAACTTTAAACTGAAACGTTTT

Function

NR:

description
PREDICTED: protocadherin alpha-3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142951 True 779 lncRNA 0.49 2 20156336 20160484

Neighbor

gene id symbol gene type direction distance location
LOC120566486 NA coding downstream 404629 19741886 ~ 19751707 (-)
LOC120566528 NA coding downstream 429045 19723502 ~ 19727291 (-)
spock1 spock1,LOC102785053 coding downstream 457567 19598361 ~ 19698769 (-)
dele1 kiaa0141 coding downstream 578490 19569535 ~ 19577846 (-)
LOC120566455 LOC100699740 coding downstream 587239 19528422 ~ 19569097 (-)
LOC120566601 diaph1 coding upstream 425498 20585982 ~ 20699203 (-)
LOC120566290 LOC104961544 coding upstream 541058 20701542 ~ 20703679 (-)
trpc7b trpc7,LOC101475915,LOC100711831,LOC102778756 coding upstream 555343 20715827 ~ 20770031 (-)
dock2 NA coding upstream 653994 20814478 ~ 20834647 (-)
LOC120567463 dock2 coding upstream 712373 20872857 ~ 20924459 (-)
G106414 LOC103375287 non-coding downstream 64252 20080046 ~ 20092084 (-)
G106375 NA non-coding downstream 101195 20040097 ~ 20055141 (-)
G106378 LOC108242387 non-coding downstream 103646 19945655 ~ 20052690 (-)
G106367 NA non-coding downstream 148757 19961954 ~ 20007579 (-)
G106349 NA non-coding downstream 298969 19857096 ~ 19857367 (-)
G106428 NA non-coding upstream 19734 20180218 ~ 20182153 (-)
LOC120567246 NA non-coding upstream 80004 20240488 ~ 20241710 (-)
LOC120567248 NA non-coding upstream 110755 20271239 ~ 20272407 (-)
LOC120567247 NA non-coding upstream 132668 20293152 ~ 20296043 (-)
G106512 NA non-coding upstream 175881 20336365 ~ 20342662 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 174703 19971833 ~ 19981633 (-)
tlr1 LOC104951710,LOC102197886 other downstream 673711 19477930 ~ 19482625 (-)
tomm5 NA other downstream 719409 19435839 ~ 19436927 (-)
LOC120566717 LOC102215832 other downstream 905900 19215989 ~ 19250436 (-)
rgs14b rgs14 other downstream 1111385 19017752 ~ 19044951 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other upstream 70424 20230908 ~ 20233924 (-)
LOC120566885 ppp2r2c other upstream 915273 21075757 ~ 21110067 (-)
G106728 mif other upstream 967354 21127838 ~ 21130970 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other upstream 1018368 21178852 ~ 21187653 (-)
G106988 NA other upstream 1629769 21790253 ~ 21790725 (-)

Expression


Co-expression Network