G106548 (LOC103374833)


Basic Information

Item Value
gene id G106548
gene name LOC103374833
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20488887 ~ 20495578 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU143107
GTCCCATCGGCTTGGTTGTGCAGTTTAAGTAAAAAATTATCACTTGGCTCAAGTACGTAACTTTGGAGACTGTTTATACCTACATCTAAATCAACTGCTCTTTCTAAAACAAATTTGGACCCAACAACTGCCGACTCGCTAATTATGAATTTAATTTCGCTTTTTTCAAAGGTTGGTGCATTGTCGTTAATATCTGTAATTTCAACCGTTACGCTGTAAAATTCCATAGGATTCTCTAACACAATCTGAAAATGCACAGCACACGGAGTCGTATCACCGCACAACGCCTCTCTGTCTATTCTCTCTTTAATAAGGAGGACTCCTCTTTCGCTGTTCAGCTCGATGTATTCTCTGCTATCACCAGAGTAAACACGAGCGTTACCCAACCTCAGCCGTTTAACGTCTAAACCTAAATCCAGAGCTATATTACCAACCAAAGAGCCTTTCGCCATTTCCTCCGAAATAGAGTAACTGACTTGGCCGAAGACTGAACAGAAAGAGAGGATCGAAATGAACACCAGTACTTGCCGTCTCATTGTTTGAAATTGTCTCGGCAAACAGAAACAGCAGTCTTGTAAAATCCGTCAGAAAGATGGACAAGCATTCAAGTAAAATATGAACCAAAACAATCCTCAAATTCCAAGCGAATGAATGATA

Function

NR:

description
PREDICTED: protocadherin beta-14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143107 True 657 lncRNA 0.40 2 20488887 20495578

Neighbor

gene id symbol gene type direction distance location
LOC120566486 NA coding downstream 737180 19741886 ~ 19751707 (-)
LOC120566528 NA coding downstream 761596 19723502 ~ 19727291 (-)
spock1 spock1,LOC102785053 coding downstream 790118 19598361 ~ 19698769 (-)
dele1 kiaa0141 coding downstream 911041 19569535 ~ 19577846 (-)
LOC120566455 LOC100699740 coding downstream 919790 19528422 ~ 19569097 (-)
LOC120566601 diaph1 coding upstream 90404 20585982 ~ 20699203 (-)
LOC120566290 LOC104961544 coding upstream 205964 20701542 ~ 20703679 (-)
trpc7b trpc7,LOC101475915,LOC100711831,LOC102778756 coding upstream 220249 20715827 ~ 20770031 (-)
dock2 NA coding upstream 318900 20814478 ~ 20834647 (-)
LOC120567463 dock2 coding upstream 377279 20872857 ~ 20924459 (-)
G106535 NA non-coding downstream 52084 20435969 ~ 20436803 (-)
G106520 LOC102792811 non-coding downstream 89274 20399337 ~ 20399613 (-)
G106512 NA non-coding downstream 146225 20336365 ~ 20342662 (-)
LOC120567247 NA non-coding downstream 192844 20293152 ~ 20296043 (-)
LOC120567248 NA non-coding downstream 216480 20271239 ~ 20272407 (-)
G106556 NA non-coding upstream 11391 20506969 ~ 20545969 (-)
LOC120567131 NA non-coding upstream 64359 20559937 ~ 20561344 (-)
G106631 LOC103354784,LOC104948895,LOC108243071,LOC103147451 non-coding upstream 445953 20941531 ~ 20943593 (-)
G106632 NA non-coding upstream 450460 20946038 ~ 20947573 (-)
LOC120567470 NA non-coding upstream 459759 20955337 ~ 20960892 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 254963 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 507254 19971833 ~ 19981633 (-)
tlr1 LOC104951710,LOC102197886 other downstream 1006262 19477930 ~ 19482625 (-)
tomm5 NA other downstream 1051960 19435839 ~ 19436927 (-)
LOC120566717 LOC102215832 other downstream 1238451 19215989 ~ 19250436 (-)
LOC120566885 ppp2r2c other upstream 580179 21075757 ~ 21110067 (-)
G106728 mif other upstream 632260 21127838 ~ 21130970 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other upstream 683274 21178852 ~ 21187653 (-)
G106988 NA other upstream 1294675 21790253 ~ 21790725 (-)
G107015 NA other upstream 1624107 22119685 ~ 22120067 (-)

Expression


Co-expression Network