LOC120567131


Basic Information

Item Value
gene id LOC120567131
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20559937 ~ 20561344 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU143133
cttgggtccgtgagctgaccaatcagatttaCGTCTCCTCACATCCCTTTTAGCGTCTGCATCAGAATGTAGGAGGCTGCCATTATTCACTCAGTAAGATAAAAAAGAACGCCAAttagtgaaataaatcaattctacATACTAAATACTATCTAATACTGCCTATACCTTGTTGTAAACAGAGCAAAAGAGAGCTGTGCCTGAATCAGCTATCGTCACGGAGTTATAGGATGTAAAATGgtggaggaggtgaaaagGCTACGCAGGGGAGGCCCAGTCCACAGAGGGATATTGAATCACATCGATTCTTCACATCCCAGAGACTTCCAGGgtttagagattcccagttcaggaTCGAGACTCTGAACGTAGACGGATTTCCCTTGATTCATTCTTCATGGTGGAAGGACAAacggaaaccaaactcatatgggccccaatgttgaacatctctgaactcttgtcatcaaagaacaattgagctcatagaactgaaaagggtttcttttgtgtgcacactttattttttcagttagtttatctgtatgtatgccatatttctgtgtatattaataccactttact
>XR_005640524.1
GGCAGCATCCTCCTATTTACCTGAAAGCTTGAAACActttgatgggcttgtaaataagccaatgggtgaacttgggtccgtgagctgaccaatcagatttaCGTCTCCTCACATCCCTTTTAGCGTCTGCATCAGAATGTAGGAGGCTGCCATTATTCACTCAAGCAAAAGAGAGCTGTGCCTGAATCAGCTATCGTCACGGAGTTATAGGATGTAAAATGgtggaggaggtgaaaagGCTACGCAGGGGAGGCCCAGTCCACAGAGGGATATTGAATCACATCGATTCTTCACATCCCAGAGACTTCCAGGgtttagagattcccagttcaggaTCGAGACTCTGAACGTAGACGGATTTCCCTTGATTCATTCTTCATGGTGGAAGGACAAacggaaaccaaactcatatgggccccaatgttgaacatctctgaactcttgtcatcaaagaacaattgagctcatagaactgaaaagggt

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU143133 True 585 lncRNA 0.41 2 20559937 20561274
XR_005640524.1 False 483 lncRNA 0.46 3 20560020 20561344

Neighbor

gene id symbol gene type direction distance location
LOC120566486 NA coding downstream 808230 19741886 ~ 19751707 (-)
LOC120566528 NA coding downstream 832646 19723502 ~ 19727291 (-)
spock1 spock1,LOC102785053 coding downstream 861168 19598361 ~ 19698769 (-)
dele1 kiaa0141 coding downstream 982091 19569535 ~ 19577846 (-)
LOC120566455 LOC100699740 coding downstream 990840 19528422 ~ 19569097 (-)
LOC120566601 diaph1 coding upstream 24638 20585982 ~ 20699203 (-)
LOC120566290 LOC104961544 coding upstream 140198 20701542 ~ 20703679 (-)
trpc7b trpc7,LOC101475915,LOC100711831,LOC102778756 coding upstream 154483 20715827 ~ 20770031 (-)
dock2 NA coding upstream 253134 20814478 ~ 20834647 (-)
LOC120567463 dock2 coding upstream 311513 20872857 ~ 20924459 (-)
G106556 NA non-coding downstream 13968 20506969 ~ 20545969 (-)
G106548 LOC103374833 non-coding downstream 64359 20488887 ~ 20495578 (-)
G106535 NA non-coding downstream 123134 20435969 ~ 20436803 (-)
G106520 LOC102792811 non-coding downstream 160324 20399337 ~ 20399613 (-)
G106512 NA non-coding downstream 217275 20336365 ~ 20342662 (-)
G106631 LOC103354784,LOC104948895,LOC108243071,LOC103147451 non-coding upstream 380187 20941531 ~ 20943593 (-)
G106632 NA non-coding upstream 384694 20946038 ~ 20947573 (-)
LOC120567470 NA non-coding upstream 393993 20955337 ~ 20960892 (-)
G106645 NA non-coding upstream 438615 20999959 ~ 21000211 (-)
LOC120566356 NA non-coding upstream 508797 21070141 ~ 21073913 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 326013 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 578304 19971833 ~ 19981633 (-)
tlr1 LOC104951710,LOC102197886 other downstream 1077312 19477930 ~ 19482625 (-)
tomm5 NA other downstream 1123010 19435839 ~ 19436927 (-)
LOC120566717 LOC102215832 other downstream 1309501 19215989 ~ 19250436 (-)
LOC120566885 ppp2r2c other upstream 514413 21075757 ~ 21110067 (-)
G106728 mif other upstream 566494 21127838 ~ 21130970 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other upstream 617508 21178852 ~ 21187653 (-)
G106988 NA other upstream 1228909 21790253 ~ 21790725 (-)
G107015 NA other upstream 1558341 22119685 ~ 22120067 (-)

Expression


Co-expression Network