G106825 (ssrp1)


Basic Information

Item Value
gene id G106825
gene name ssrp1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21389612 ~ 21401183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU143475
tgcggctttattaaaaagtattcatttatttattcaagtCTGAAAACAAGACatggtaaaacaaaaaaaactgtggtTTTTAAATGCTCTACAAAGGAAGAACAAAACAGCTTCGTATCGACTCTTCTTCTAATCCACATTAAATCAACTCCTATAGTCTGAGAAAGGTTGTACACCAGTATACCACTATTTCAATGAGCGCTCATGGGAAAACTCACTCAAATATCACGTGAGCTTTTCAGAGTCGCAAGATGAGTGATGACTCCTAAAGCAAAACatgtagaagaaaaaaatacaactcAAGTTCGTTGATTCGTCAGTCAGTCCATTTGTGTGAGATCAACATAAAGAGCATAAATGCTTGGTCCTTGGTTTGTGTGTCGGATgggtaaaagtgtgtgtgtttagtcaGACTCTTCCTCTGAGCTGGCAGGTGTGGACAcagcctcttcctcctcatcatcagatTCCTTCTTCCTCTTGGACTTGCTCTTATGGTCAGAGTCTGATGAACTCTCGCTGGTCTCGATGAACTCTTTACTTTTGAAGCTGTCGTTGCCTCCTCCCCGCTCCCTGTCCTTGTCTGCACTGGCAgacttcctcttcttctcctccttcttacCTCCAGATTTTCTACTCTCCTTTTTGGAACTGGAGGTTGCTCCTCCACCGCTCTCTTTGAACTCTTGCTTTGCTTTTTCATAATTCCTCTTTGCCTCTCCAGCCTTTGTGTCCCACTCCTCCTTCTCGTCTTTGCCTAGTTGTCTCCACATCTCTCCGGCCTTCTTGGAAATCTCTGTGATGGAGATGCCCGGGTTCTCTGACTTGATTCGCTCGCGGCTGGAGTTGAGCCACAGCATGTAGGCACTCATCGGCCTCTTGGGACCGCCGGTTTCTTTCTGCTTCTTCTCTTTGCGTggtttcctctcttttttctccttcACCACTTTGGGTTTCTTGGCCTTCTTCTTCTCGCTCGCATCATCGCTATCGTCCCCGTCTTCGCTGCTGTCGCTCGCTGAGGCATTGCTGTCGTACTCTTCTGCAATGTCATCATCTTCTTCTCCGGGATTAAACGACTCATCGCTTTCGCCATCTGACTCCTCGCTGTCGTTGCCCTCCTCTCTGATCTTGCCCTCAGCCTTCATCCTCTCCAGGTAGGCGTCGTGCTGGTCGTCGTCCGAGTCACTGTACTCGTCAATCTTACCCTTCATGCCTTCTTTGAACCCTCTGTTCTTGATGTTGAGCTTCTTGGCGTTAACAAAGTCAAACAGTTTTCCGTACTCCTctCTCTCAATGCTGCTGAAGGTGTACTGATTTCCCTGCTTGGTTTCGATCTCAAAGTCGAAGGATCGCGTTGTGGTGGTGCCTCGGGCGAAATTGACGCAGGAGATCTCCTCAAAGCGCAGGTGCACGGGGGGCTTGTGGACATAGATGAAGCCCCTCTCCAGGGGATAGAGGAGGCCCGAGGACGCCTTGTAGGAGCAGGTAATGCACTGAGCTCCAGAGTGACTGGGGAAGAATGACACACATTTAACCGGATTTACTTAAGTAtatgagaaaatgtgttttgtctaCTAGGTGCTTACCCCTGGAAGTTTCCAGGTACAGTGATCTTGCGGTTGACCAGGGCCTTCATCACCCTGCTGACCATCTCATACAGAGACCCTGACATGTTTTTACTGAGTTTGCCCTCAAAGCGGCGCTCCACATCCTCC
>TU143476
tgcggctttattaaaaagtattcatttatttattcaagtCTGAAAACAAGACatggtaaaacaaaaaaaactgtggtTTTTAAATGCTCTACAAAGGAAGAACAAAACAGCTTCGTATCGACTCTTCTTCTAATCCACATTAAATCAACTCCTATAGTCTGAGAAAGGTTGTACACCAGTATACCACTATTTCAATGAGCGCTCATGGGAAAACTCACTCAAATATCACGTGAGCTTTTCAGAGTCGCAAGATGAGTGATGACTCCTAAAGCAAAACatgtagaagaaaaaaatacaactcAAGTTCGTTGATTCGTCAGTCAGTCCATTTGTGTGAGATCAACATAAAGAGCATAAATGCTTGGTCCTTGGTTTGTGTGTCGGATgggtaaaagtgtgtgtgtttagtcaGACTCTTCCTCTGAGCTGGCAGGTGTGGACAcagcctcttcctcctcatcatcagatTCCTTCTTCCTCTTGGACTTGCTCTTATGGTCAGAGTCTGATGAACTCTCGCTGGTCTCGATGAACTCTTTACTTTTGAAGCTGTCGTTGCCTCCTCCCCGCTCCCTGTCCTTGTCTGCACTGGCAgacttcctcttcttctcctccttcttacCTCCAGATTTTCTACTCTCCTTTTTGGAACTGGAGGTTGCTCCTCCACCGCTCTCTTTGAACTCTTGCTTTGCTTTTTCATAATTCCTCTTTGCCTCTCCAGCCTTTGTGTCCCACTCCTCCTTCTCGTCTTTGCCTAGTTGTCTCCACATCTCTCCGGCCTTCTTGGAAATCTCTGTGATGGAGATGCCCGGGTTCTCTGACTTGATTCGCTCGCGGCTGGAGTTGAGCCACAGCATGTAGGCACTCATCGGCCTCTTGGGACCGCCGGTTTCTTTCTGCTTCTTCTCTTTGCGTggtttcctctcttttttctccttcACCACTTTGGGTTTCTTGGCCTTCTTCTTCTCGCTCGCATCATCGCTATCGTCCCCGTCTTCGCTGCTGTCGCTCGCTGAGGCATTGCTGTCGTACTCTTCTGCAATGTCATCATCTTCTTCTCCGGGATTAAACGACTCATCGCTTTCGCCATCTGACTCCTCGCTGTCGTTGCCCTCCTCTCTGATCTTGCCCTCAGCCTTCATCCTCTCCAGGTAGGCGTCGTGCTGGTCGTCGTCCGAGTCACTGTACTCGTCAATCTTACCCTTCATGCCCTGAAAGTAAACTGCACGGTCagaaacaaacagaacaaacCAACAGTACTCACAATACAGCATAGCTATTGTAGAGTCTTCCAGGACCTACTAGTCGCCAGGCAACGCTCATGAATGATAGAAAATGGattgttcatttttttcaataaaatgcaaaaagatACTGCAAAATGTCAATCACAATTTCACAGAGGTCTAGGTACATTTTCAATTAATTTTTTGTCCAACCAATAGTCCATAAATATTTAATTGAGAATTGGCAGTTTGTGGGGATTTTTACTTAATAttaggcctggcaaactcgattcctttttaggattcaggttattctgagtcactcactaaactgatccgggttgtgcgaatcacttgaatcacttgagtcagtattgtatgctacatccaaggcgagcttttgatttggataaaatgccatgttttcatttagaatcttttaattttatttgaaaaaaaatccataaatataaatggtctgaaagaaaaccgaatattcatttaaaaatgacatggaattatattttttaactttaataggactgacaaataagaaagccatctggactctgaacatttacaatgacttaaaatctctttaatgtaaattccat

Function

symbol description
ssrp1 Enables RNA binding activity. Involved in regulation of chromatin organization. Predicted to be located in nucleoplasm. Predicted to be part of FACT complex.

NR:

description
PREDICTED: FACT complex subunit SSRP1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143475 False 1718 lncRNA 0.48 9 21389612 21401183
TU143476 True 1846 lncRNA 0.42 7 21394462 21401183

Neighbor

gene id symbol gene type direction distance location
clcf1 clcf1 coding downstream 8434 21367088 ~ 21381178 (-)
slc43a1a slc43a1 coding downstream 40678 21314294 ~ 21348934 (-)
tmx2a tmx2 coding downstream 81477 21302070 ~ 21308135 (-)
smtnl1 smtnl1,LOC106942261 coding downstream 151089 21233306 ~ 21238523 (-)
LOC120567254 NA coding downstream 159237 21220217 ~ 21230375 (-)
zgc:113229 NA coding upstream 15511 21416694 ~ 21423613 (-)
tbc1d10c tbc1d10c,LOC106938142 coding upstream 28311 21429494 ~ 21438163 (-)
LOC120566376 NA coding upstream 93711 21494894 ~ 21500640 (-)
LOC120566537 LOC104958700,LOC103358614 coding upstream 105886 21507069 ~ 21510003 (-)
LOC120566697 NA coding upstream 218680 21619863 ~ 21621608 (-)
G106802 med19 non-coding downstream 75485 21312363 ~ 21314127 (-)
G106793 clp1,LOC102795812 non-coding downstream 101831 21286314 ~ 21287781 (-)
G106784 NA non-coding downstream 132965 21252905 ~ 21256647 (-)
LOC120566633 NA non-coding downstream 225549 21149902 ~ 21164063 (-)
LOC120566356 NA non-coding downstream 315699 21070141 ~ 21073913 (-)
G106848 NA non-coding upstream 39641 21440824 ~ 21443089 (-)
G106852 ran,LOC105022884 non-coding upstream 42214 21443397 ~ 21446726 (-)
G106872 NA non-coding upstream 88873 21490056 ~ 21490821 (-)
G106959 eef1g non-coding upstream 299766 21700949 ~ 21725692 (-)
G106989 klhl4,LOC104919997 non-coding upstream 390622 21791805 ~ 21792629 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 201959 21178852 ~ 21187653 (-)
G106728 mif other downstream 258642 21127838 ~ 21130970 (-)
LOC120566885 ppp2r2c other downstream 279545 21075757 ~ 21110067 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 1155688 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 1407979 19971833 ~ 19981633 (-)
G106988 NA other upstream 389070 21790253 ~ 21790725 (-)
G107015 NA other upstream 718502 22119685 ~ 22120067 (-)
G107117 NA other upstream 1289977 22691160 ~ 22692831 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 1589804 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 1691382 23092565 ~ 23177026 (-)

Expression


Co-expression Network