G107235 (rom1,LOC103366586,LOC102779683)


Basic Information

Item Value
gene id G107235
gene name rom1,LOC103366586,LOC102779683
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22990987 ~ 22993229 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144086
TTCTAATAGCTGGCATGCTAACACCTACTCTACCCCTTGACCTGTCACCCTCTGATCATTACTAGTGACCCCCACCTTCAGGGACTCCTCCAGGCTTCCCTGCAGGGCGTAGCTGAGCACCACAACAGCGATGAGCAAACAACAGAGCACTGCAGCTACAGCAAACCAAGCCAGCAGGAAAACTTTCCAACGTGGGAAGCGGGTTGCATCCAAGGAGTCCTGACACGCGCGACTGGCAACCCAGTTGGTGCCGATGGAGGCCAGGCCCACCATCATCAGGATGTTGGGCACCACGTGGATCTCTGTGTTGTCCATCACCTCGGCCCTACGGAGCAGCTCTGTCTTAAGGTAAACCCCCAGACAAAAGATGATGACCCCCCACATCACTGCCATCCAGGACAGCAGCCACAGGCCCTGGGCCAGGTGCACCCGCCGCTGCTGGGTGAACTTTATCTTCAACAGCATGGCTCACTACCATGCACCGATCAACGCAAAAGTTCAGGAGAGAAAAGTAAGAGAAGcggagagaagaggaaggagtTCAGTCAGTTCTGGTCAAAACTTGAGATCCAGAGACGGCCAGCTGCACGTAAAGAGACAAACCCAACTGAGGTCACAAGAGGGTGTTTTCAACGTTGCAGAAACACAGTGGTCAATACAGGCCTTGTGCTTGTTGTTTGGTGAGTTATTAGCTGGTTGAGCTCATCTAAGTTATTCCAGGTGGAGGCGATAAGCAGGTAGATCCCTCAGATGATAAAGGACACAGTCGACCTCAGAGGATAATCCAAAAGCTTTCACTTGGATGCTGAAATTGTCCcaaaaagatgatttataatcAAAAGCAGTGCAGCAAAACTTTGAAAAATATGTGATGATTGTCAAATAATGAATTGTGGAAGAAAAGATGTATTCCTTTCTCCTCAAGTTGATTGGTCACACCGCCGTAGCCCCCCCTTCAAGCTGATTTCTTTCTCTTGATGTGATGTTGTCTTTTGATGGCGCCCCTCTGGGTCTGTGCATGTGCGGCGACCCCCTAAACCGCTGTTCCCATCTTTGGAGAAAACAGAAACTGGCCAAAGTCGA

Function

symbol description
rom1 Predicted to enable protein homodimerization activity. Predicted to be involved in visual perception. Predicted to act upstream of or within several processes, including detection of light stimulus involved in visual perception; protein complex oligomerization; and retina development in camera-type eye. Predicted to be located in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Implicated in retinitis pigmentosa 7.

NR:

description
PREDICTED: peripherin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144086 True 1083 TUCP 0.50 2 22990987 22993229

Neighbor

gene id symbol gene type direction distance location
scyl1 scyl1 coding downstream 27033 22950544 ~ 22963954 (-)
LOC120566540 NA coding downstream 45059 22941936 ~ 22945928 (-)
ints5 ints5 coding downstream 50682 22935020 ~ 22940305 (-)
ganabb ganab coding downstream 56423 22919844 ~ 22934564 (-)
si:ch211-114c17.1 LOC103374192,LOC100701998,LOC102296932 coding downstream 72205 22910157 ~ 22918782 (-)
macrod1 NA coding upstream 58188 23051417 ~ 23155345 (-)
trnaw-cca_10 NA coding upstream 167630 23160859 ~ 23160930 (-)
trnaw-cca_11 NA coding upstream 168159 23161388 ~ 23161459 (-)
trnaw-cca_12 NA coding upstream 172128 23165357 ~ 23165428 (-)
kcnk4a LOC104959797 coding upstream 273685 23266914 ~ 23282656 (-)
G107220 NA non-coding downstream 17227 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 114528 22875496 ~ 22876459 (-)
G107160 NA non-coding downstream 134641 22856125 ~ 22856346 (-)
G107102 NA non-coding downstream 272217 22713037 ~ 22718770 (-)
G107097 NA non-coding downstream 305529 22683733 ~ 22685458 (-)
G107282 NA non-coding upstream 176919 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding upstream 186463 23179692 ~ 23181717 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding upstream 248808 23242037 ~ 23263899 (-)
G107610 NA non-coding upstream 798825 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 1206270 24199499 ~ 24259346 (-)
G107117 NA other downstream 298156 22691160 ~ 22692831 (-)
G107015 NA other downstream 870920 22119685 ~ 22120067 (-)
G106988 NA other downstream 1200262 21790253 ~ 21790725 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 1803334 21178852 ~ 21187653 (-)
G106728 mif other downstream 1860017 21127838 ~ 21130970 (-)
trpt1 trpt1,LOC102777684 other upstream 99336 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other upstream 136480 23129709 ~ 23134785 (-)
rnaseh2c rnaseh2c other upstream 190963 23184192 ~ 23187058 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 891359 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 1580212 24573441 ~ 24579099 (-)

Expression


Co-expression Network