tgfb5 (LOC104925539,LOC103374198,LOC102800105,LOC105920438,LOC102314494,LOC101466107,LOC100690458)


Basic Information

Item Value
gene id tgfb5
gene name LOC104925539,LOC103374198,LOC102800105,LOC105920438,LOC102314494,LOC101466107,LOC100690458
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23252755 ~ 23262261 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144145
CCGGTCGCCGTCCATCTAGCCAGTCAAAAagagtcgatctccgaatgtgaatgaacggactccataggaggaaatgtcattcttatatgaggctccttttatGCTCCTATTtagtcaatattgtttttcactaacggcaaaacaacaaattatccgtgcatttatatggaactaatcTTTAGGAGCCTTCCATCTTTattctcctccctgttacgttgcattcggagatcgactctTTTTGACTGACAAGATGGCGGATAGCGTAAACaacaactgctaaaGTGTGGATGATGAGCAGCTTCGTCAGATCAGAAAGCCCGGTCAGGTTAAAGGCCAGGCAGATTTCAGCACCAAGACGCCGCACCTCATCCTCACCGTGCTGCCCAGTGACAGAGTGGACAACCCGGTCAAGAAGAACCGCAAGAAGAGGGCGGCCGCCACAGACACCACAACCTGCTCCCGcGGTTCAGACCAGGGCTGCTGCCTGCGCTCGCTCTACATCGACTTCAGGCGGGACCTCAACTGGAAGTGGATCCATGAGCCCAAAGGTTACAAAGCCAACTTCTGTGCCGGCAGCTGTCCTTACCTCTGGAGTGCCAACAACCACTATAACTTGATTCTGCCCCTGTACAACAAGCTGAACCCTGAGGCCTCGGCCTCGCCCTGCTGCGTTCCTCAGGACCTGGAGCCCCTCACCATTATGTACTTCATAGGCCGCACACCACGCGTTGAGCAACTCTCCAATATGGTCGTCAAATCCTGCAAGTGCCGCTGAGTTCAGAGGAAGAGGTGATTACAGGAC
>XM_039812882.1
AAGCATTTTTGTGGAGAGAagaaattgcaaaatgtgtttgaGAGAGGAAGATGGCTCTTGCCTACATAATCACACACTCCCTTCCCTTGGTGGCAGCCcgccccaccaccaccaccacttctCTCACATCcagtccctccctcctccacctccttctGTCTGAGCATTTCTCTCAGAGGATCTGCAGAATAATGGAGTCACATCATGCAGCAGGTCTCGGTGTTTTCAGCAGAGCTTTCAGACTGGAGCTCATTTAAACCGGGGATCTGTAATTTACTGTGAagtttcctcttcttttttttaattcacagCACAAGGACTTCTTTCATATGTTTTTCTGCgtcatgtctttttatgtcGTCTGACTTTTTCCGTGTTTTGATGTTTATATGAGGGGGATTAACAGGCCCACCATGGTTTTTCCAGTATAAATCAACAGTATCTGGCTACGTTTTAGTGCAGACtgctttctgtttacatataacGGGGAATGAGAGGACCTCATTGGGTGtgttttttaaagctgtaaCTAGATTTTCTGGAAGCGGGTATATGGGCCAGTTTTTGCTCCACAGATGGGGGGTTCGGAGGTGAAAGCACGGGAGCCGCGCTGCTTCAGATAAAGTGAGCAGCTCAGGTTTTTGTTTGGAGAATTTGCGACATGGGCTGAGCTCCTGTGATGACTCTTTTCTCCTGAAAGCTGTTGAATTATCCGAGGATGGACGACGGAAAATGGAGAATGCTAAAATGAATGTATCGGTTAATTAATTGTAATTAAATATCTTCACTTTTACACGCAGAAAGTGCGCACGCACCGGCACGGGACAACCCCGGAGCTTTTGATCGCACCGGATTGGAATTCAGGTGTCAGCCAAACTTCCAATCACTAAATGTGAGGTTGTTACAGTGGAGCTGGTTGTAGTGTGATGTCATTTGGCGTGTGGAAGCAGTTGTACGGATCCgcgtgttgttgttttttaattcaacaaCTTCAGTGTAGACTCTAAAGAATAAATGGCAATTCGTCTTTATGTGTCTGGTGTCTGGCGCGTGTATGAACGACGTTATAGAATAACCGTAGCAGAATAAGTGTGAAGTCAGCagatgtgttttttctttccacAGAAAGTGGTTTTGACCAAAATAGCCTGTTAGAATTGGATATTGTCTgtgctttatttttattccaaTAGTTTTGGAGACATTGGTTTAACCCtcagttttatgttttaaacCACTTTACGCACATATTTCTTCATTCTTGGTTTTTGAGACTCCGCTTTAGTGACACTCTCCCACACTGACCGCAACAGTTTCAGCTGGATTTTCTCCACGGCCGTCCAGAGAATCTCTGTCCCTCCGTCTCCTCCCCGGACAATGTGGCTCCTCCGCCtctcgctgctgctgctcctgctccGGTTCTCCGGTGTGTTGCTGGTGGAGGGGTTCAACACGTGCCACTCCATCAACCTGGACGCGCAGAAGTCCCGGCGCATCGAGGCGGTCCGCGGACAGATCCTGAGTAAGCTCCGCATCCGCAGCCCGCCGGAGAAGGACGAGGCCCCGCCGCCTGGCTCGGTGCCCCCGGAGGTCATGCTGCTCTACAACAGCACGCGGGAGTTGCTGAAGGAGCGCGCGCGTCTGGCCGAGTCCGCGTGCGAGCGCGAGAGCAGCGAAGAGGACTATTATGCAAAAGAGGTGCAAAGGATTGACATGCTGCCCCCCCGCACCGAGACAAatGCCGTACAGCCAGCAGTTCCCAACCCCCATTACAGAGTCGTCCACTTTGACGTCAGTGGAGTGGACCTGACCAACAGCACCCTGGTCAAGGCTGAGTTCAGGATCTTCAGAGCTCCCAACCCGCAGGCCCGGGCCTCAGAGCAGAGAGTGGAAATCTATCAGctgctGAAGCCAGATGAAGAGAGTACCTCCACTCAGCGTTATATTGACTCCCGCACTGTTCAGCCAAAGGCAAAAGGAGCCTGGATCTCTGTGGATGTCACCGAAACCATTAAGGACTGGATATCAGATCCAGAGAATAATCTTGGCTTGAAGTTGGGCGTCCACTGTCCCTGCTGCACTTTTGTCCCATCCACTAACAACATCGTTCCCAACAAGAGTGAGGAACTGGAAGCTCTCTTTGCAGGTGTGGATGATGAGCAGCTTCGTCAGATCAGAAAGCCCGGTCAGGTTAAAGGCCAGGCAGATTTCAGCACCAAGACGCCGCACCTCATCCTCACCGTGCTGCCCAGTGACAGAGTGGACAACCCGGTCAAGAAGAACCGCAAGAAGAGGGCGGCCGCCACAGACACCACAACCTGCTCCCGcGGTTCAGACCAGGGCTGCTGCCTGCGCTCGCTCTACATCGACTTCAGGCGGGACCTCAACTGGAAGTGGATCCATGAGCCCAAAGGTTACAAAGCCAACTTCTGTGCCGGCAGCTGTCCTTACCTCTGGAGTGCCAACAACCACTATAACTTGATTCTGCCCCTGTACAACAAGCTGAACCCTGAGGCCTCGGCCTCGCCCTGCTGCGTTCCTCAGGACCTGGAGCCCCTCACCATTATGTACTTCATAGGCCGCACACCACGCGTTGAGCAACTCTCCAATATGGTCGTCAAATCCTGCAAGTGCCGCTGAGTTCAGAGGAAGAGGTGATTACAGGACCAAAACTACAAACTCTTTCGCTTAAGGGCGGG

Function

NR:

description
transforming growth factor beta-2-like

GO:

id name namespace
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144145 False 802 TUCP 0.51 4 23258271 23262229
XM_039812882.1 True 2699 mRNA 0.51 7 23252755 23262261

Neighbor

gene id symbol gene type direction distance location
trmt112 trmt112,LOC102775658 coding upstream 1380 23244451 ~ 23251375 (+)
LOC120566542 atg2a coding upstream 9156 23238348 ~ 23243599 (+)
atg2a atg2a coding upstream 15591 23215893 ~ 23237164 (+)
nxf1a nxf1,LOC102775940 coding upstream 38822 23200615 ~ 23213933 (+)
si:ch73-22a13.3 LOC102780362,LOC103374341,LOC102213327 coding upstream 53800 23193164 ~ 23198955 (+)
zgc:162144 LOC100705221,LOC102196865,LOC102798772,LOC101467665,LOC103374172,LOC107377608 coding downstream 48475 23310736 ~ 23314230 (+)
nudt22 nudt22 coding downstream 90997 23353258 ~ 23357565 (+)
hs6st2 LOC104925546,LOC104960671,LOC103374067 coding downstream 111956 23374217 ~ 23377146 (+)
mbnl3 LOC100691532,LOC101470482,LOC102193800,LOC102309145,LOC102795898 coding downstream 115949 23378210 ~ 23410314 (+)
rap2c rap2c,LOC105911927,LOC106515678,LOC100691801,LOC107560880 coding downstream 148748 23411009 ~ 23415301 (+)
G107276 NA non-coding upstream 15305 23237251 ~ 23237450 (+)
G107203 NA non-coding upstream 294175 22958158 ~ 22958580 (+)
G107185 NA non-coding upstream 295856 22919853 ~ 22956899 (+)
G107191 ganab non-coding upstream 320593 22929269 ~ 22932162 (+)
G107187 ganab non-coding upstream 326019 22925809 ~ 22926736 (+)
G107334 NA non-coding downstream 8538 23270799 ~ 23271221 (+)
G107341 NA non-coding downstream 20718 23282979 ~ 23285214 (+)
G107340 NA non-coding downstream 23102 23285363 ~ 23287678 (+)
G107353 stx5 non-coding downstream 57131 23319392 ~ 23320649 (+)
G107377 NA non-coding downstream 154963 23417224 ~ 23417543 (+)
flrt1b LOC103374305,LOC102200053 other upstream 120070 23100025 ~ 23132685 (+)
rom1b rom1,LOC102779683 other upstream 255717 22950595 ~ 22997038 (+)
G107168 NA other upstream 278994 22954972 ~ 22973761 (+)
ubxn1 ubxn1,LOC103374193 other upstream 343193 22903755 ~ 22909562 (+)
G107163 LOC103356264 other upstream 387079 22862190 ~ 22865676 (+)
G107333 NA other downstream 6530 23268791 ~ 23270216 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other downstream 192279 23454540 ~ 23466205 (+)
LOC120566905 LOC104953971 other downstream 226024 23488285 ~ 23492538 (+)
G107386 cfl1 other downstream 230583 23492844 ~ 23494989 (+)
G107487 mrpl11,LOC102790704 other downstream 328067 23590328 ~ 23626289 (+)

Expression


Co-expression Network