G107324 (atg2a,si:ch73-45o6.2,LOC107660800)


Basic Information

Item Value
gene id G107324
gene name atg2a,si:ch73-45o6.2,LOC107660800
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23242037 ~ 23263899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144201
gTAACCATAACAGCCATTGGTGTTGATTAGCAGCAAAGATAGTGGTCCGTTTTTATactcaaatgttttattttttttgtattaattttGTATACTCCTTGTTTTTATATTATACAGGTCATTCATACAGTTTGATATAGTAAATAGTAATTACACACAAGAGGTGTAACAAGCATCAACCTGTCACCCTCACAGACATGCATtacacgtacacacaaacaaactcattctcacacacacacacacacacacacacacacacacacacacacacacacacacaccttactcttaaacaaaaaagataaaaatgtaaaactttttttttttaaccacaaaaCACTAAATTTTTCATCCTCCATCGTCACCAGATTCACATCCTTTcaactcttattttgaaaacgAGTATGACAATACTTAAATGTTTTaacagaataaaaaacaaataaagaaacataaaaaaatgcagGAAGGCAActaaagaagagagaaaagcaaTTCTGAAGACCGAGAAGAGTTATCCAGATCTCAGTCTTTAACTGTTGATGGAAACCGAAGCACAAATGAGCTGCAATGCAGAAGGAAGAACCACCGGCTAATATCTGGAGAACTGTCTGAGTTACAGACAACTGAAGTCTATCTTGACTTTGTGAAACTTTAAAATAATCCAATGCGCTACAGAGTTTACAGGCTTCGTGTGATCTGTTTATCTTTTTAGTCAGGAAACTTGTTCTCAGTCAGGTATGTATCCATATGAGCCAGTATACTTGACAGTAGCAGGGAGGGTGAACCAAAGCTGAACCAATGacaatgtgttgtgttgtgaagTGAGGGTGAAAACCATCTAGAGGGTGTTAGCAAAGGACACTTCATTAAAATATCTCCCTGTCTCTACTACGAGCATCACTGGACAACACATCACATAATGCACCCATAAAAGGTATACTGTTCGCAGCTAGTGATGGGTGAATTGGAATACAAAGAGAAGGAATTTCTGACATAAGTTCACCTTCTTCCTACTTCCTCTTACTTCTTCTCCATGGACCTTGGAAGAAGGTGAAATTGTGCCAGAAAGCATTACTTTAAATAAGAATACAAACAGTTTGAAGCAGCACAATTCAGAGTACATGGAGTGCCCACAATACATAAGTAAACCTTGAGTGATAATCCTATCTGCCCTTGGTTGGATTGAAAATGAACTGTTGAGAGTGACGGTGATATGTTTGCACAGACAGTAAGGAGAATCTGCAGACTAGTATCTCACTGAGGGGAGGAATATGAGGAGAGCTCTTGCCAAATGCAAACAGAATGATTAAATCTGGTTAAGTCCATGTATGATGGAGCCACATAAAACACTGGGTGTCAGTAACTGCAGTAGTCGTTAGtcgttgctttgtttttgcattgGAGCCAACACTGACTCTCATTAGTccatacacacatgcaaatacacATTCAAACCCTAGATTTTCTCCTTTAGCCGAGACTTCCACAAGTCATaattgcacacacaaacacactttctctctctcacacagacaaaaaaaagttgtcTTCATTCTTGGCCATCATCCGTGCGCCACTTCAGGAAATCCTCCTTCCGGGCGTCTGGTTTGATCTGGTTCCGCATGCCCCCGAGAAGATTGGAAGTGGCTTCAGAGGCCACTATTAAGGGTCGGACCACAGTGGGTGGGATCTGCCGCAGGACGCCGCCCACAGCGCCGGGTAGACCCTTCTGTTCGTGGCCGCGGGATGCTACATCGCACAAGGTCTGAGCTGTGTCAATCA
>TU144202
acacacacacacacacacacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccttactcttaaacaaaaaagataaaaatgtaaaactttttttttttaaccacaaaaCACTAAATTTTTCATCCTCCATCGTCACCAGATTCACATCCTTTcaactcttattttgaaaacgAGTATGACAATACTTAAATGTTTTaacagaataaaaaacaaataaagaaacataaaaaaatgcagGAAGGCAActaaagaagagagaaaagcaaTTCTGAAGACCGAGAAGAGTTATCCAGATCTCAGTCTTTAACTGTTGATGGAAACCGAAGCACAAATGAGCTGCAATGCAGAAGGAAGAACCACCGGCTAATATCTGGAGAACTGTCTGAGTTACAGACAACTGAAGTCTATCTTGACTTTGTGAAACTTTAAAATAATCCAATGCGCTACAGAGTTTACAGGCTTCGTGTGATCTGTTTATCTTTTTAGTCAGGAAACTTGTTCTCAGTCAGGTATGTATCCATATGAGCCAGTATACTTGACAGTAGCAGGGAGGGTGAACCAAAGCTGAACCAATGacaatgtgttgtgttgtgaagTGAGGGTGAAAACCATCTAGAGGGTGTTAGCAAAGGACACTTCATTAAAATATCTCCCTGTCTCTACTACGAGCATCACTGGACAACACATCACATAATGCACCCATAAAAGGTATACTGTTCGCAGCTAGTGATGGGTGAATTGGAATACAAAGAGAAGGAATTTCTGACATAAGTTCACCTTCTTCCTACTTCCTCTTACTTCTTCTCCATGGACCTTGGAAGAAGGTGAAATTGTGCCAGAAAGCATTACTTTAAATAAGAATACAAACAGTTTGAAGCAGCACAATTCAGAGTACATGGAGTGCCCACAATACATAAGTAAACCTTGAGTGATAATCCTATCTGCCCTTGGTTGGATTGAAAATGAACTGTTGAGAGTGACGGTGATATGTTTGCACAGACAGTAAGGAGAATCTGCAGACTAGTATCTCACTGAGGGGAGGAATATGAGGAGAGCTCTTGCCAAATGCAAACAGAATGATTAAATCTGGTTAAGTCCATGTATGATGGAGCCACATAAAACACTGGGTGTCAGTAACTGCAGTAGTCGTTAGtcgttgctttgtttttgcattgGAGCCAACACTGACTCTCATTAGTccatacacacatgcaaatacacATTCAAACCCTAGATTTTCTCCTTTAGCCGAGACTTCCACAAGTCATaattgcacacacaaacacactttctctctctcacacagacaaaaaaaagttgtcTTCATTCTTGGCCATCATCCGTGCGCCACTTCAGGAAATCCTCCTTCCGGGCGTCTGGTTTGATCTGGTTCCGCATGCCCCCGAGAAGATTGGAAGTGGCTTCAGAGGCCACTATTAAGGGTCGGACCACAGTGGGTGGGATCTGCCGCAGGACGCCGCCCACAGCGCCGGGTAGACCCTTCTGTTCGTGGCCGCGGGATGCTACATCGCACAAGGTCTGAGCTGTGTCAATCA

Function

symbol description
atg2a Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagy of mitochondrion; autophagy of nucleus; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum membrane; lipid droplet; and phagophore assembly site membrane. Predicted to be active in phagophore assembly site. Predicted to be extrinsic component of membrane. Orthologous to human ATG2A (autophagy related 2A).

NR:

description
PREDICTED: autophagy-related protein 2 homolog A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144201 True 1788 lncRNA 0.41 2 23242037 23243940
TU144202 False 1604 lncRNA 0.42 2 23242037 23263899

Neighbor

gene id symbol gene type direction distance location
trnaw-cca_12 NA coding downstream 76609 23165357 ~ 23165428 (-)
trnaw-cca_11 NA coding downstream 80578 23161388 ~ 23161459 (-)
trnaw-cca_10 NA coding downstream 81107 23160859 ~ 23160930 (-)
macrod1 NA coding downstream 86692 23051417 ~ 23155345 (-)
scyl1 scyl1 coding downstream 278083 22950544 ~ 22963954 (-)
kcnk4a LOC104959797 coding upstream 3015 23266914 ~ 23282656 (-)
si:dkeyp-115e12.6 LOC105026731 coding upstream 21420 23285319 ~ 23308063 (-)
stx5a stx5 coding upstream 51939 23315838 ~ 23322957 (-)
vegfba vegfb coding upstream 64351 23328250 ~ 23344198 (-)
dnajc4 dnajc4 coding upstream 82288 23346187 ~ 23351569 (-)
G107282 NA non-coding downstream 17581 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 60320 23179692 ~ 23181717 (-)
G107220 NA non-coding downstream 268277 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 365578 22875496 ~ 22876459 (-)
G107160 NA non-coding downstream 385691 22856125 ~ 22856346 (-)
G107610 NA non-coding upstream 528155 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 935600 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 1024250 24288149 ~ 24381312 (-)
G107742 NA non-coding upstream 1168102 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding upstream 1184222 24448121 ~ 24450769 (-)
rnaseh2c rnaseh2c other downstream 54979 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 65011 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 107252 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 248808 22990987 ~ 22993229 (-)
G107117 NA other downstream 549206 22691160 ~ 22692831 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 620689 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 1309542 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 1598071 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 1999273 25263172 ~ 25264864 (-)
G107989 NA other upstream 2015704 25279603 ~ 25288086 (-)

Expression


Co-expression Network