rab41 (rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768)


Basic Information

Item Value
gene id rab41
gene name rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23884588 ~ 23988901 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144595
AGATACACTACTTGCTCCTCTCCGGTCTAGACATCACATCATTAGCCAAGTCAGCTAGTTAGCTGTTTATTTTCTGAACAAAATGTCAACTACGACCGGCGGCGGAGAGTTTGGCAACCCTCTACGAAAGTTCAAGCTCGTCTTTCTGGGCGAACAGAGTGTTGGGAAGACCTCACTCATCACCAGGTTTATGTATGACAGTTTCGACAACACCTATCAGGCAACCATTGGCATTGACTTTTTGTCAAAAACCATGTACCTAGAAGATCGCACGATTCGGCTGCAActctgggg
>TU144596
TATGACATAGCCAATCTTAATTCATTCCAGCAAACCTCAAAGTGGATTGATGATGTtagaacagagagaggaagtgatgtcattaTCATGCTTGTTGGGAACAAAACAGACTTGGCGGATAAAAGGCAAGTTTCTGTTGAGGCGGCAGAGAGGAAAGCTCGTGAGCTCAATGTGATGTACATAGAGACCAGTGCCAAGGCTGGCTATAACGTCAAACAGCTGTTCCGtcgtgttgctgctgcattgcCTGGGATGGATAGCACACCAGAGAAAAGCAAAGAAGACATGATCGACATCAAACTGGAGAAACAGCCAGAGATGACTGTCACCGAGAGCAGCTGCTCATGCTAGTACACCTCACCCCTCACCCTCACCTAGCCTGTCTCCTCCCCACCAACAGCTTGTCTCTCAGTGGCCACTCTCTCCACCCTTGGCACACTGCCATTGGCACGGAGAAcctgtctttttttccttttccaacTCAGTGACTTTTCAGAGTAACCGTGTGGATGTGCATTACTGTATTGAAACagattatctgtgtgtgtgtggtggtgggggagggggatggtacaaaagtaaacatttaaaacaaggaATAAGTTAAACGATATGTTCATTTTTATCCAGTTGCATGGCATTATGTAGGATTGCATACTGACATATCTATCCGCTCATGAGTTATTGCACAGTTGGGAATCTTTGTGCTGTTACTCTTGTCATTGTTGTAAAGTAAAACTGATTGGGATTATTTAAATGACTACAAGGTTGAGTCCTCAGCCCAttatattctacttttttttattttaaatggagAGTTTGCCTACAACTTTTCTATCTCTCAGATTATTTCttgactttgttttattttgaggaaGTAGAGACAGGATGTTACCAGTGACTTTACATCATTGCTCACCATCATATTGCCACATCAGGCTCAAATGGACCTTTTTTATTGAAGAGGGGCAATGGTCCATTCATAAGATATTATCTATACCTAACACATCTGCAATACACCAGTGTGTTTGCAGACGAAATTGACATCATTTGAGACCTTATTTAAAACCGTGGAAAAGGGATGTGTAACCAAACAATGAGGTAATAGATCAAAGGGAAAGCATCCCAAATTCAGTAGAATGGTTACTAACCTGAAACTATGTCTGCATTAAAACTATAGCAACTGTCTTtccaatgttgttaaattagCTGCATGCATACTAACATGTCTGAGGAGGAATTTTCTGTTATTACAAGCCcctaatgtagaaaaaaaaaaaaaaaaaaaaattaaaagccagTGTTTAGTTTTTCCACGCTGATGGAAAGTTGTCACTTTGGTCGCTATGACGTACCCGCCATCTCATTGAtaatttgtgttgtgttgattACACTATTGCAAAACATGCAGCATGCTCACCATGCAGGATTTATATGGATAAGAACACAGATGCCTTGCTTGTTTGTTCACCAACGTTGTGCACTGAATCAAGCCACAatattgtaaaatataaaagaagCCTGCTGACTGGTTCATGGCTTCACTAGTTGTTTTGTAGAGCTGGTAAATAAGAGTTAGTCCTCCGATACAGCTTATGCTTACTAACACCCTTGCTGTAAAAAGTGCAGAGAAGTTAGTCACAGTACCCATTGCTGTATTGCTATTGCCTGTGTAGGACTgttggttttatttgttttatttattttgtaacttGGACATACAGATAACATTATATGCTTGACCAAAAGTACCGATGCTGACACGCATGTtgaaagtttatttaatttattgtttGCGTGTCTGCCGGGACTCCATCTAAAGGCAAGACTTAGGCCCGGTAACGTTTTTTCCTGTCACACTGCTAGAAATTACTTTTTTGGTGTGTGTAGTCATTAGCTTGGTTTACAGTCACAGGTAAAAGCTGCACCGtctccacagacacacacacacacatatacacacacacactcacactcacacacacacacaccgctgtgTAACACACACCAACTAACTAGCCATAGCACAACAAAAGACACTGGTCATTTGCTGTAGCTTGTTTGAAATGTCAATGTTTTAACACGAGCAGCTCTTCTATTACTTGTCACTGACTAAATACTCAGCTTTGTGCTATTCTAAATTGTGTCTGTCCATTTGAAAATATGCTGTCTACTTGTGTTTAGCAACGTTTGTGTGAGATATGTTCTATTACTATCTGATGTATAAAAAGGAGAAATAATGAAACACAAGTGTAGGCCTATCACatggaataaaataaagatatttcaCC
>TU144597
gcacacacacacacacacacacacacatacacacacacacacacacacacacacacacactgtgTAACACACACCAACTAACTAGCCATAGCACAACAAAAGACACTGGTCATTTGCTGTAGCTTGTTTGAAATGTCAATGTTTTAACACGAGCAGCTCTTCTATTACTTGTCACTGACTAAATACTCAGCTTTGTGCTATTCTAAATTGTGTCTGTCCATTTGAAAATATGCTGTCTACTTGTGTTTAGCAACGTTTGTGTGAGATATGTTCTATTACTATCTGATGTATAAAAAGGAGAAATAATGAAACACAAGTGTAGGCCTATCACatggaataaaataaagatatttcaCC
>XM_039813211.1
TTATGAAAACAATAGCGCTGGCTAGTGCAGGATAAAGATACACTACTTGCTCCTCTCCGGTCTAGACATCACATCATTAGCCAAGTCAGCTAGTTAGCTGTTTATTTTCTGAACAAAATGTCAACTACGACCGGCGGCGGAGAGTTTGGCAACCCTCTACGAAAGTTCAAGCTCGTCTTTCTGGGCGAACAGAGTGTTGGGAAGACCTCACTCATCACCAGGTTTATGTATGACAGTTTCGACAACACCTATCAGGCAACCATTGGCATTGACTTTTTGTCAAAAACCATGTACCTAGAAGATCGCACGGTCCGGCTCCAGCTTTGGGACACTGCTGGACAGGAGCGTTTTCGTAGCCTAATTCCCAGCTACATCCGTGACTCTACCATTGCCGTGGTTGTTTATGACATCACCAATCTTAATTCATTCCAGCAAACCTCAAAGTGGATTGATGATGTtagaacagagagaggaagtgatgtcattaTCATGCTTGTTGGGAACAAAACAGACTTGGCGGATAAAAGGCAAGTTTCTGTTGAGGCGGCAGAGAGGAAAGCTCGTGAGCTCAATGTGATGTACATAGAGACCAGTGCCAAGGCTGGCTATAACGTCAAACAGCTGTTCCGtcgtgttgctgctgcattgcCTGGGATGGATAGCACACCAGAGAAAAGCAAAGAAGACATGATCGACATCAAACTGGAGAAACAGCCAGAGATGACTGTCACCGAGAGCAGCTGCTCATGCTAGTACACCTCACCCCTCACCCTCACCTAGCCTGTCTCCTCCCCACCAACAGCTTGTCTCTCAGTGGCCACTCTCTCCACCCTTGGCACACTGCCATTGGCACGGAGAAcctgtctttttttccttttccaacTCAGTGACTTTTCAGAGTAACCGTGTGGATGTGCATTACTGTATTGAAACagattatctgtgtgtgtgtggtggtgggggagggggatggtacaaaagtaaacatttaaaacaaggaATAAGTTAAACGATATGTTCATTTTTATCCAGTTGCATGGCATTATGTAGGATTGCATACTGACATATCTATCCGCTCATGAGTTATTGCACAGTTGGGAATCTTTGTGCTGTTACTCTTGTCATTGTTGTAAAGTAAAACTGATTGGGATTATTTAAATGACTACAAGGTTGAGTCCTCAGCCCAttatattctacttttttttattttaaatggagAGTTTGCCTACAACTTTTCTATCTCTCAGATTATTTCttgactttgttttattttgaggaaGTAGAGACAGGATGTTACCAGTGACTTTACATCATTGCTCACCATCATATTGCCACATCAGGCTCAAATGGACCTTTTTTATTGAAGAGGGGCAATGGTCCATTCATAAGATATTATCTATACCTAACACATCTGCAATACACCAGTGTGTTTGCAGACGAAATTGACATCATTTGAGACCTTATTTAAAACCGTGGAAAAGGGATGTGTAACCAAACAATGAGGTAATAGATCAAAGGGAAAGCATCCCAAATTCAGTAGAATGGTTACTAACCTGAAACTATGTCTGCATTAAAACTATAGCAACTGTCTTtccaatgttgttaaattagCTGCATGCATACTAACATGTCTGAGGAGGAATTTTCTGTTATTACAAGCCcctaatgtagaaaaaaaaaaaaaaaaaaaaattaaaagccagTGTTTAGTTTTTCCACGCTGATGGAAAGTTGTCACTTTGGTCGCTATGACGTACCCGCCATCTCATTGAtaatttgtgttgtgttgattACACTATTGCAAAACATGCAGCATGCTCACCATGCAGGATTTATATGGATAAGAACACAGATGCCTTGCTTGTTTGTTCACCAACGTTGTGCACTGAATCAAGCCACAatattgtaaaatataaaagaagCCTGCTGACTGGTTCATGGCTTCACTAGTTGTTTTGTAGAGCTGGTAAATAAGAGTTAGTCCTCCGATACAGCTTATGCTTACTAACACCCTTGCTGTAAAAAGTGCAGAGAAGTTAGTCACAGTACCCATTGCTGTATTGCTATTGCCTGTGTAGGACTgttggttttatttgttttatttattttgtaacttGGACATACAGATAACATTATATGCTTGACCAAAAGTACCGATGCTGACACGCATGTtgaaagtttatttaatttattgtttGCGTGTCTGCCGGGACTCCATCTAAAGGCAAGACTTAGGCCCGGTAACGTTTTTTCCTGTCACACTGCTAGAAATTACTTTTTTGGTGTGTGTAGTCATTAGCTTGGTTTACAGTCACAGGTAAAAGCTGCACCGtctccacagacacacacacacacatatacacacacacactcacactcacacacacacacaccgctgtgTAACACACACCAACTAACTAGCCATAGCACAACAAAAGACACTGGTCATTTGCTGTAGCTTGTTTGAAATGTCAATGTTTTAACACGAGCAGCTCTTCTATTACTTGTCACTGACTAAATACTCAGCTTTGTGCTATTCTAAATTGTGTCTGTCCATTTGAAAATATGCTGTCTACTTGTGTTTAGCAACGTTTGTGTGAGATATGTTCTATTACTATCTGATGTATAAAAAGGAGAAATAATGAAACACAAGTGTAGGCCTATCACatggaataaaataaagatatttcaCCAAAATTTAA
>XM_039813212.1
TTTATGAAAACAATAGCGCTGGCTAGTGCAGGATAAAGATACACTACTTGCTCCTCTCCGGTCTAGACATCACATCATTAGCCAAGTCAGCTAGTTAGCTGTTTATTTTCTGAACAAAATGTCAACTACGACCGGCGGCGGAGAGTTTGGCAACCCTCTACGAAAGTTCAAGCTCGTCTTTCTGGGCGAACAGAGTGTTGGGAAGACCTCACTCATCACCAGGTTTATGTATGACAGTTTCGACAACACCTATCAGGCAACCATTGGCATTGACTTTTTGTCAAAAACCATGTACCTAGAAGATCGCACGGTCCGGCTCCAGCTTTGGGACACTGCTGGACAGGAGCGTTTTCGTAGCCTAATTCCCAGCTACATCCGTGACTCTACCATTGCCGTGGTTGTTTATGACATCACCAATCTTAATTCATTCCAGCAAACCTCAAAGTGGATTGATGATGTtagaacagagagaggaagtgatgtcattaTCATGCTTGTTGGGAACAAAACAGACTTGGCGGATAAAAGACAGATCACCACGGAGGAGGGTGAGCAGAGAGCTAAGGAACTGAATGTCATGTTCATTGAAACCAGCGCAAAGACTGGCTACAATGTCAAACAGCTGTTCCGtcgtgttgctgctgcattgcCTGGGATGGATAGCACACCAGAGAAAAGCAAAGAAGACATGATCGACATCAAACTGGAGAAACAGCCAGAGATGACTGTCACCGAGAGCAGCTGCTCATGCTAGTACACCTCACCCCTCACCCTCACCTAGCCTGTCTCCTCCCCACCAACAGCTTGTCTCTCAGTGGCCACTCTCTCCACCCTTGGCACACTGCCATTGGCACGGAGAAcctgtctttttttccttttccaacTCAGTGACTTTTCAGAGTAACCGTGTGGATGTGCATTACTGTATTGAAACagattatctgtgtgtgtgtggtggtgggggagggggatggtacaaaagtaaacatttaaaacaaggaATAAGTTAAACGATATGTTCATTTTTATCCAGTTGCATGGCATTATGTAGGATTGCATACTGACATATCTATCCGCTCATGAGTTATTGCACAGTTGGGAATCTTTGTGCTGTTACTCTTGTCATTGTTGTAAAGTAAAACTGATTGGGATTATTTAAATGACTACAAGGTTGAGTCCTCAGCCCAttatattctacttttttttattttaaatggagAGTTTGCCTACAACTTTTCTATCTCTCAGATTATTTCttgactttgttttattttgaggaaGTAGAGACAGGATGTTACCAGTGACTTTACATCATTGCTCACCATCATATTGCCACATCAGGCTCAAATGGACCTTTTTTATTGAAGAGGGGCAATGGTCCATTCATAAGATATTATCTATACCTAACACATCTGCAATACACCAGTGTGTTTGCAGACGAAATTGACATCATTTGAGACCTTATTTAAAACCGTGGAAAAGGGATGTGTAACCAAACAATGAGGTAATAGATCAAAGGGAAAGCATCCCAAATTCAGTAGAATGGTTACTAACCTGAAACTATGTCTGCATTAAAACTATAGCAACTGTCTTtccaatgttgttaaattagCTGCATGCATACTAACATGTCTGAGGAGGAATTTTCTGTTATTACAAGCCcctaatgtagaaaaaaaaaaaaaaaaaaaaattaaaagccagTGTTTAGTTTTTCCACGCTGATGGAAAGTTGTCACTTTGGTCGCTATGACGTACCCGCCATCTCATTGAtaatttgtgttgtgttgattACACTATTGCAAAACATGCAGCATGCTCACCATGCAGGATTTATATGGATAAGAACACAGATGCCTTGCTTGTTTGTTCACCAACGTTGTGCACTGAATCAAGCCACAatattgtaaaatataaaagaagCCTGCTGACTGGTTCATGGCTTCACTAGTTGTTTTGTAGAGCTGGTAAATAAGAGTTAGTCCTCCGATACAGCTTATGCTTACTAACACCCTTGCTGTAAAAAGTGCAGAGAAGTTAGTCACAGTACCCATTGCTGTATTGCTATTGCCTGTGTAGGACTgttggttttatttgttttatttattttgtaacttGGACATACAGATAACATTATATGCTTGACCAAAAGTACCGATGCTGACACGCATGTtgaaagtttatttaatttattgtttGCGTGTCTGCCGGGACTCCATCTAAAGGCAAGACTTAGGCCCGGTAACGTTTTTTCCTGTCACACTGCTAGAAATTACTTTTTTGGTGTGTGTAGTCATTAGCTTGGTTTACAGTCACAGGTAAAAGCTGCACCGtctccacagacacacacacacacatatacacacacacactcacactcacacacacacacaccgctgtgTAACACACACCAACTAACTAGCCATAGCACAACAAAAGACACTGGTCATTTGCTGTAGCTTGTTTGAAATGTCAATGTTTTAACACGAGCAGCTCTTCTATTACTTGTCACTGACTAAATACTCAGCTTTGTGCTATTCTAAATTGTGTCTGTCCATTTGAAAATATGCTGTCTACTTGTGTTTAGCAACGTTTGTGTGAGATATGTTCTATTACTATCTGATGTATAAAAAGGAGAAATAATGAAACACAAGTGTAGGCCTATCACatggaataaaataaagatatttcaCCAAAATTTAA
>XR_005640439.1
CGTTTATGAAAACAATAGCGCTGGCTAGTGCAGGATAAAGATACACTACTTGCTCCTCTCCGGTCTAGACATCACATCATTAGCCAAGTCAGCTAGTTAGCTGTTTATTTTCTGAACAAAATGTCAACTACGACCGGCGGCGGAGAGTTTGGCAACCCTCTACGAAAGTTCAAGCTCGTCTTTCTGGGCGAACAGAGTGTTGGGAAGACCTCACTCATCACCAGGTTTATGTATGACAGTTTCGACAACACCTATCAGGCAACCATTGGCATTGACTTTTTGTCAAAAACCATGTACCTAGAAGATCGCACGGTCCGGCTCCAGCTTTGGGACACTGCTGGACAGGAGCGTTTTCGTAGCCTAATTCCCAGCTACATCCGTGACTCTACCATTGCCGTGGTTGTTTATGACATCACCAATCTTAATTCATTCCAGCAAACCTCAAAGTGGATTGATGATGTtagaacagagagaggaagtgatgtcattaTCATGCTTGTTGGGAACAAAACAGACTTGGCGGATAAAAGGCAAGTTTCTGTTGAGGCGGCAGAGAGGAAAGCTCGTGAGCTCAATGTGATGTACATAGAGACCAGTGCCAAGGCTGGCTATAACGTCAAACAGACAGATCACCACGGAGGAGGGTGAGCAGAGAGCTAAGGAACTGAATGTCATGTTCATTGAAACCAGCGCAAAGACTGGCTACAATGTCAAACAGCTGTTCCGtcgtgttgctgctgcattgcCTGGGATGGATAGCACACCAGAGAAAAGCAAAGAAGACA

Function

symbol description
rab6ba Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).
rab41 Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB41 (RAB41, member RAS oncogene family).

NR:

description
ras-related protein Rab-6B isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07893 RAB6A; Ras-related protein Rab-6A

RNA

RNA id representative length rna type GC content exon number start site end site
TU144595 False 294 lncRNA 0.47 4 23889905 23892263
TU144596 False 2291 lncRNA 0.40 5 23884597 23988901
TU144597 False 357 lncRNA 0.37 2 23884597 23971180
XM_039813211.1 False 2702 mRNA 0.41 8 23884588 23892298
XM_039813212.1 True 2703 mRNA 0.41 8 23884588 23892299
XR_005640439.1 False 785 transcript 0.47 8 23886824 23892301

Neighbor

gene id symbol gene type direction distance location
stard14 NA coding downstream 1131 23879061 ~ 23883457 (-)
gdpd2 NA coding downstream 15832 23858022 ~ 23868756 (-)
dlg3 dlg3,LOC106611741,LOC102786504 coding downstream 28297 23770291 ~ 23856291 (-)
kdrl LOC103373800 coding downstream 127437 23710021 ~ 23757151 (-)
cdx4 cdx4 coding downstream 187098 23694270 ~ 23697490 (-)
f9a NA coding upstream 94403 24083304 ~ 24091230 (-)
zic6 LOC104917996,LOC104957987,LOC103376516,LOC101465244,LOC102782580,LOC102312981 coding upstream 333156 24322057 ~ 24330760 (-)
LOC120566938 tm9sf2 coding upstream 419775 24408676 ~ 24418311 (-)
cd40lg NA coding upstream 465904 24454805 ~ 24457209 (-)
tmtops3a LOC103376588,LOC104957983,LOC101471053,LOC102197526,LOC102311316 coding upstream 470196 24459097 ~ 24465511 (-)
G107610 NA non-coding downstream 92086 23792054 ~ 23792502 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding downstream 620689 23242037 ~ 23263899 (-)
G107282 NA non-coding downstream 660132 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 702871 23179692 ~ 23181717 (-)
G107220 NA non-coding downstream 910828 22928854 ~ 22973760 (-)
G107667 NA non-coding upstream 210598 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 299248 24288149 ~ 24381312 (-)
G107742 NA non-coding upstream 443100 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding upstream 459220 24448121 ~ 24450769 (-)
G107759 NA non-coding upstream 480048 24468949 ~ 24469187 (-)
rnaseh2c rnaseh2c other downstream 697530 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 707562 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 749803 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 891359 22990987 ~ 22993229 (-)
G107117 NA other downstream 1191757 22691160 ~ 22692831 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 584540 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 873069 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 1274271 25263172 ~ 25264864 (-)
G107989 NA other upstream 1290702 25279603 ~ 25288086 (-)
diaph2 NA other upstream 1848429 25837330 ~ 26258199 (-)

Expression


Co-expression Network