G107755 (arhgef6)


Basic Information

Item Value
gene id G107755
gene name arhgef6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24448121 ~ 24450769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144778
aggcagcctctcttttacaggaacaccctgatcacattcacacagttacacattcatacctggaagctgcccagtacaaccagagtctgatctgctggccactgagcagctccttgCTTccagggccttgctcaagggcagcTCAGTGGTGGTAACGAGGGAGGGacttttcactttccccactGTTAGTACAACAAGTAAATGAAGGCCTATTTTCCAAAGTAATAATACACATACTTTTCCTCAATAACGGTCTGCCCGTTGCTCTTCATCTCCTCCACAATGATCTTCTCTTCCTCTGGCAGAAGCACCTGAGGGATGCACTCTTTCCGCaccgATAAACGCACACCTGTGGTGTTCTGGTGCAGGCTGGCTCCTGTGCAGTACGCCTCAATCACCCTCAGTATCTGGGCGTCCTCCTCCAGCGCAACCGTGCTTTTCCTCGTTTGAACCTCGTCATCAGAGGGCTTCCGCTCTTTTTTCCTATTGCCTGGCAGGAACTTCTTCATGGGCCGTGGGCTTTTGCTGGAGTCCTGGAGGAGTGCGACATTAAAAATTCAGTACATCCCTGCGCgcgatcacacacacacacacacacacacacacacagacacacacacagacacagacacacacagacacacacacacacagacacacaaagccAAGGCTCCATACCAAACAGAATGCAAGCTTACAGGGAAACGTATCCCTTATGAACAAAGAACATCAAAATCCATCAACAAACGAGGCAGCAAGCATGTGGCGATGACTGTGACCAAACCTGCCaggtaatcaatcaatcaatcaatcaatcaatcaatcaatctataaaaataaattaatttatatataaattaatcAATTAAGTATTAAGTCCACATTTTTTCATGGTACTTATATCAAAAAATTTCACCCACCACTGACTACTGTCAGGGAAGGAGAAAAAACACTTTACCTGTGGAATGCAGTGTTCACAAAGCCATGGGAAAAAAGCTAAGATGTGATTACATTAATATTATAGCAAAGTCACAATGATGTGGTTTTATGAAtgagagattttcttttttggtgCTGGGTTGTCAGTTTCCTCTCCTGATGACACATTAAAAGCTGAGGTGTGATGAATAATTAGCTCACTAAAAACCGATGGGTAGCGCTAACTTGTGGCCATGAATGTCATTttaattcttataatacttCACATGTAGTAATTTGCCccatgagaggagaggagaggagaggcttAGTCAAACACGCAATAGGGAAATAGAGAGTACGGAATTGTCCGTTTCAGTAATTTATGGGGCATCGTGAAACTCCACCAGAGACTCCTAAAAGTCCCTCATAAGAATCAGGAGGAATAATTGACGACATCATGTTTCTTAGAACCTTTGAAGTTGCTCAGGGACTCATGTTAATGCAGGCGCACAGCACAAATCTCATTTTCTTGACGTGTACTGAGCTTCTTCCCTTGTTGGTTTAGTGTTCTCATTGTGACAGTGGGAGGAAAGGGGAAATAGGGGTGGTGTGAAAATGGCAATTAAGTGGCACGCTGCAGCTTTTGTGTCAAGATTGGCAGCGTTTATAGCTCTGTCCACCTGCTTGGAGTACATCAACAGTGCATTATGCCTAGCGTACACACATTCTGTGAGATTTACGTCACTTTAAAGCCGCATGATTGATATTTATGGCTGCTTGGGAGCAGGAGAACTTCACAAGAAGCTTACAGACACGAGGACCTGAAATATGATCACCTTATGTAAAGCTGTTTTGTCCAACATGTTTAACAACTGCcttcacatccagcagacacataGGAGCTTTAGCATCCTTTTGGAGTTTTGTTTAAAGCCACCTGGTGAAGAACTAAGGTGGATCATTGTGAGGTCTAATACAATTGCTCATCATCACGCATGGAAAACATAGCTCCCACCAggtttttcagaaacatgtatTGACATTCAAAAGAGACATCATCCAACCTATGGCAGCATATGTGGGCTGCTGATTATTCAAATGTGACACTTGTGCAAGCACAtcatcagcacacacacatcagttgCACAAGTTGTGGTTGGAGTCCAGGAAGAATAGCTGTGGCTATGGCCCCAGCTAATGGAGAtcccaataaatcaaatcaaaatcagcAATGATTGGAGTCTTGGTCTAGATTTCCAAAAAACAGCACCTAGAGTAGAAATTTAGTACTACTGTTGCATGAGAACAGATAATTGATACAATACAGGGTTTTCTCTCGGTTTATGGAAGACGTACTTGTATGTGCTCGAATTTGGCGGGGGGTTTAAGTgtccttcctcaagaaaataagtttttcaataaaaaaaa

Function

symbol description
arhgef6 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in lamellipodium. Human ortholog(s) of this gene implicated in intellectual disability and non-syndromic X-linked intellectual disability 46. Orthologous to human ARHGEF6 (Rac/Cdc42 guanine nucleotide exchange factor 6).

NR:

description
uncharacterized protein LOC110520745

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144778 True 2349 lncRNA 0.43 3 24448121 24450769

Neighbor

gene id symbol gene type direction distance location
LOC120566938 tm9sf2 coding downstream 29810 24408676 ~ 24418311 (-)
zic6 LOC104917996,LOC104957987,LOC103376516,LOC101465244,LOC102782580,LOC102312981 coding downstream 117361 24322057 ~ 24330760 (-)
f9a NA coding downstream 356891 24083304 ~ 24091230 (-)
arr3b NA coding downstream 547821 23894595 ~ 23900300 (-)
stard14 NA coding downstream 564664 23879061 ~ 23883457 (-)
cd40lg NA coding upstream 4036 24454805 ~ 24457209 (-)
tmtops3a LOC103376588,LOC104957983,LOC101471053,LOC102197526,LOC102311316 coding upstream 8328 24459097 ~ 24465511 (-)
vgll1 NA coding upstream 22406 24473175 ~ 24476728 (-)
adgrg4a NA coding upstream 26796 24477565 ~ 24490143 (-)
fhl1a fhl1 coding upstream 76895 24527664 ~ 24541162 (-)
LOC120566461 NA non-coding downstream 66809 24288149 ~ 24381312 (-)
G107667 NA non-coding downstream 188775 24199499 ~ 24259346 (-)
G107610 NA non-coding downstream 655619 23792054 ~ 23792502 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding downstream 1184222 23242037 ~ 23263899 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 1266404 23179692 ~ 23181717 (-)
G107759 NA non-coding upstream 18180 24468949 ~ 24469187 (-)
G107764 map7d3 non-coding upstream 46567 24497336 ~ 24514238 (-)
G107765 NA non-coding upstream 72354 24523123 ~ 24524589 (-)
G107772 NA non-coding upstream 92611 24543380 ~ 24543713 (-)
G107855 taf7l,taf7 non-coding upstream 110434 24561203 ~ 24563631 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 459220 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1261063 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 1271095 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 1313336 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 1454892 22990987 ~ 22993229 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 122672 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 411201 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 812403 25263172 ~ 25264864 (-)
G107989 NA other upstream 828834 25279603 ~ 25288086 (-)
diaph2 NA other upstream 1386561 25837330 ~ 26258199 (-)

Expression


Co-expression Network