G107874 (xkrx,LOC102776626)


Basic Information

Item Value
gene id G107874
gene name xkrx,LOC102776626
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24824081 ~ 24835348 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144950
AATTTAAGGTGATGAGTCATCGTCTTAACAGAGTTGCCAACCTCAACTCATGTCATCATTTTAAGAGGTATTTCAACCTTGCCAAGAATAAAAATCAAGAGTGCAACACTGTAGTGATTTTTAAGATAATCATATAGTGGAACAGCAgcatgaccccccccccccccacccctgttCTTACTTCTTGCAGGGAGGATGTATTTCTCCTGGATGGTGGCATACAGCTGGAGCGTCAGCTGAGGCGCAGAGCCTAGAAAAGCCTGGATGACTGCGGTGCGTTTGAAGGCATTTCTGTGGGTGGCCAGGTTGCGCTCCGATTGGCCGATTTCCCACTCCATAGGCATCCCCTGTCCCTTCTTCAGACTGATCTTCCTGGAGATGGTGACGTAAGGCTCCTCCTTTTTACCCGCCTTGAAATACACCACCAGAGCCTCGAAACCGAATGACAGGGCCGAGCATCAGCAGGTGCAGGAAGAGAACCAGGGGCCGGTCCCGACCCAGGTCTCTGTGGATGAACGTCAGCGCCAATTGGATGATCACGGCGGGCAGCAGCATGAAGGCGATGGTGAAGCCCAACCAGATGTCGTCGTCGGTCTTGTGGTACATGCTGCAGAGCACGGCGGCGGAGACGAACTCTGCGCAGTAGAGCACGGTGGCCAGCACGACGCTGAACGGAGGCTTGATCCGGCTGTGATTGACCACCAGCAGGACTCCGTTCTCCACCGCCGTGGGGCACTCCTGCGGCTCTATGTCCGAGATCTCCCTCTCTTGCTCTTCCATGGCCACTTCGCacgtcatttttattttgttttttattaataaatgtgGTTAGAATGCGGGGCACGATTTGGGCGTCGCTAAAGGACGTTGATGCTAATCTGAGTTTGCCGTAGCGTGCTCCAAAAACATCCCTTTTTTGTAAATACTTCCTTTGATGCGCCGCCTCTCCCAACTTTCCACCAAGTTGATCATCGCTGGTTTCACATTGTGTTTATAACTTCACAACTCGGCTGGTGCCACCGCTCCACTGCACCGGCACCCCCCACACAaggcttttgttttattgtctcgTATATCGTCGTACGTGGCGTTAACCCTCCAGAGGAACCACCTCAATGCCCGCAGCGGTTTCAGCGCTGTTGTTGCACCGTCAGTcagtgtgactctgtgtgtgaaGGATCGGGAAAGTTCAGCCTCGTCATGTAGGACGCTCACATTCAGCACCGTTGATCATCGTCCTATCAGTAGCCTATAGCCTTGAAGTTTGTTTTACGTTCAACACACAGGTTTCCTCGGCTGTAGAGTGTGACTGCAGGCTGTAGGAGGCCTGGCTGTCTCCTCGTGTTTTTTTCAGTCTGTTGATGCGCTCTCAATGCAACAGCTGCGTTAAGTCAGCCAGAAGCACACGGGG

Function

symbol description
xkrx Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in EVL; head mesenchyme; myotome; and somite. Orthologous to several human genes including XKRX (XK related X-linked).

NR:

description
PREDICTED: XK-related protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144950 True 1411 lncRNA 0.52 2 24824081 24835348

Neighbor

gene id symbol gene type direction distance location
arl13a arl13a,LOC102776915,LOC103352893 coding downstream 3588 24815085 ~ 24820493 (-)
tmem35 tmem35a coding downstream 14148 24807285 ~ 24809933 (-)
cenpi cenpi coding downstream 18343 24791383 ~ 24805738 (-)
drp2 drp2,LOC107724836 coding downstream 34168 24582963 ~ 24789913 (-)
slc9a6a slc9a6 coding downstream 265960 24544010 ~ 24558121 (-)
cstf2 cstf2 coding upstream 11544 24846892 ~ 24859372 (-)
mid1ip1l mid1ip1,LOC104928730,LOC103352948 coding upstream 73548 24908896 ~ 24911419 (-)
tspan7 tspan6,LOC104955938,LOC107378166 coding upstream 77215 24912563 ~ 24918751 (-)
sytl4 NA coding upstream 93353 24928701 ~ 24942371 (-)
trmt12 trmt12,LOC106611794 coding upstream 108100 24943448 ~ 24948186 (-)
G107855 taf7l,taf7 non-coding downstream 260450 24561203 ~ 24563631 (-)
G107772 NA non-coding downstream 280368 24543380 ~ 24543713 (-)
G107765 NA non-coding downstream 299492 24523123 ~ 24524589 (-)
G107764 map7d3 non-coding downstream 309843 24497336 ~ 24514238 (-)
G107759 NA non-coding downstream 354894 24468949 ~ 24469187 (-)
G107880 NA non-coding upstream 5479 24840827 ~ 24841052 (-)
G107885 LOC104956976 non-coding upstream 41474 24876822 ~ 24881870 (-)
G107887 NA non-coding upstream 47782 24883130 ~ 24883757 (-)
G107888 bcorl1 non-coding upstream 48652 24884000 ~ 24884256 (-)
G107889 NA non-coding upstream 49661 24885009 ~ 24885427 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other downstream 244982 24573441 ~ 24579099 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 835180 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1637023 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 1647055 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 1689296 23129709 ~ 23134785 (-)
trnav-uac_15 NA other upstream 26622 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 427824 25263172 ~ 25264864 (-)
G107989 NA other upstream 444255 25279603 ~ 25288086 (-)
diaph2 NA other upstream 1001982 25837330 ~ 26258199 (-)
rpl36a LOC106604455,LOC100304549,LOC100219516 other upstream 1622647 26457995 ~ 26460732 (-)

Expression


Co-expression Network