G107992 (sept6)


Basic Information

Item Value
gene id G107992
gene name sept6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25291617 ~ 25297266 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU145122
TAAACCCTAACTAAAATTAAAAGGAAAGTGTGTCTAAATTGTGGAAATAAATTATCCCCCAGcttcaacaaacaacaaaaaataattctACTGGAAACTTTGAGACATAAAATAAGCGTCTGGCTGATGATAATAGTGTGATTAAGTGAAGTTCACCTTGCTGTCAAGTTTCTTCATGGTAACCAAGTCCAGGGATTTGAGCGAGTGTCCTGTGGGAGCGATGAAATAGAGGCATGCGTGGATGCGGGTGTCGTGGTAACTGTGTAGCGTGCGCTTGATTTTCAGCTCCTCTTGTAGATAAGCTTCAAACTGGGCATCAATGAACTCCACGATAGACTTGTAGCTGTCTTCTTTATTGATCTGGTCTCCGAAGCCCACGGTGTTGACGACGGTGAGTTTAAGGCGCACGTTACTCTCCTGGAGCTCATAGGTGTTGGACTTGAGCGTGACTCCTGGCTGGTTGTGCTGGGTGGGCTCGCCCTCGAACTTGGTGTTGAACAACGTGTCCATGAGGGTGGACTTCCCCAGACCTGTCTCGCCAACACAGAGGATGTTGAAGCAGAATCCGTGGTTGACAGACTTGTTGACCAGCTGGTCAGGCATGCTGTCGAAGCCGACATGGCCTGCCAGAGGGACAGCACGAGCACCTTCACCCGCTTGCCTTGCTATCTCGG

Function

symbol description
sept6 Predicted to enable GTPase activity and molecular adaptor activity. Acts upstream of or within cilium assembly and determination of left/right symmetry. Located in cilium. Is expressed in several structures, including Kupffer's vesicle; axis; hypochord; nervous system; and pronephros. Orthologous to human SEPTIN6 (septin 6).

NR:

description
PREDICTED: septin-6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145122 True 674 lncRNA 0.49 4 25291617 25297266

Neighbor

gene id symbol gene type direction distance location
pttg1 NA coding downstream 1483 25284705 ~ 25290134 (-)
sowahd NA coding downstream 7052 25282801 ~ 25284565 (-)
zbtb33 zbtb33 coding downstream 33985 25252765 ~ 25257632 (-)
atp1b4 atp1b4 coding downstream 53003 25233186 ~ 25238614 (-)
mcts1 mcts1 coding downstream 91102 25198318 ~ 25200515 (-)
ube2a ube2a,Ube2a,ube2al,LOC103150206 coding upstream 19032 25316298 ~ 25320522 (-)
tnmd tnmd coding upstream 68904 25366170 ~ 25432527 (-)
zgc:101583 LOC103366979,LOC102198838,LOC100710928,LOC102783729 coding upstream 1181625 26478891 ~ 26483763 (-)
med12 NA coding upstream 1189906 26487172 ~ 26517479 (-)
wu:fb13g09 LOC103367058 coding upstream 1221549 26518815 ~ 26569298 (-)
G107923 NA non-coding downstream 105139 25180938 ~ 25186478 (-)
G107907 NA non-coding downstream 217785 25073181 ~ 25073832 (-)
G107903 NA non-coding downstream 310820 24977124 ~ 24980797 (-)
G107890 NA non-coding downstream 400901 24890301 ~ 24890716 (-)
G107889 NA non-coding downstream 406190 24885009 ~ 24885427 (-)
G108031 NA non-coding upstream 351268 25648534 ~ 25648780 (-)
G108036 NA non-coding upstream 382826 25680092 ~ 25680437 (-)
G108040 NA non-coding upstream 477316 25774582 ~ 25774823 (-)
G108082 NA non-coding upstream 1154544 26451810 ~ 26452058 (-)
G108083 NA non-coding upstream 1156930 26454196 ~ 26454400 (-)
G107989 NA other downstream 3531 25279603 ~ 25288086 (-)
ndufa1 NA other downstream 26753 25263172 ~ 25264864 (-)
trnav-uac_15 NA other downstream 429433 24861970 ~ 24862184 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other downstream 712518 24573441 ~ 24579099 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 1302716 23884588 ~ 23988901 (-)
diaph2 NA other upstream 540064 25837330 ~ 26258199 (-)
rpl36a LOC106604455,LOC100304549,LOC100219516 other upstream 1160729 26457995 ~ 26460732 (-)
G108181 LOC103390578 other upstream 1691998 26989264 ~ 27001011 (-)
G108191 NA other upstream 1768152 27065418 ~ 27065947 (-)
LOC120566767 NA other upstream 1771255 27068521 ~ 27095897 (-)

Expression


Co-expression Network