LOC120567396


Basic Information

Item Value
gene id LOC120567396
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27394158 ~ 27396031 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU145500
TCTGCGCATTGACCGACCGTTCAAAACATTACCCACAGCATCGCGGCTGGAGCCACGCTAGACTACTCGACTGAAATAATTTTTCGCCGAGCCCGGAGAGCGGAGACAATGCGGACAAAACTCCATTGCAGGTGCAGGAGCATCTCGAACAACCCAGGTGGTGATGGCAGGAAAGGTCTGATCATGGCGGATgatcatcaccatcaccatcaccatcatccCACTGCTCTACGCTTTTAGCCTCTTTACAGTGCTGCCTTGTCTAATCATGTTCAAGCAGCATTGTACAGGGCTATGACAGCATAGAGAGCTGAGCTGCTCAGGCGCTGCGTTTCTCTGACCCTTTTGGATGGCGGCCAATAATGACATCATCCGTTAAAAACACTAAACGGCGATTTTTGCATGTAAGGATTGTTGGCAATAGACTGACTTGTCTTGTAATGTTCACGCTCGTGTCGTCAAAAAACTAAGATGCATTGCTTTTTcagtgttaaataaaaaaaaaagtggagcaCATTAAGTTCTCAGTGGGTTGAATTATTCAATGCAAACCTAAATCCCTTTGCAGCCAATACATTATTGAAACAGTTAGTCACATTGCATTGTGCTGCTTCTGTATGTCCATTGCATTTGAGTCCCACAGAGCTAATCATCCcctttttcttaatttttgttGTTGGACCTCTGTTCTGAATTTGATTTCCCCAAATCGTTTAAGACTATTTTAACCATCTGGATGAAAAAATATTCTGTTTGCTGCATGATAACACAGATAAACGTGAGAGGCACAAACTGCATATAGGGCATTGTTTGGGGAATATgtttgtactgtactgtatgtatggctGTAGAGTGCAACTAACGAttgttttcattgtcgattgctaaaaaaataaataaatcacaattcCATATTCCCAAAGCCAAATGTGACatcctaaaatgttttcatttcaacAGTTGGAGATATTCACTTTACTATCACCAAGAAGAGACAAAGAAAATCAGCAAATTCTCACAATTGACAAgcttaaacagagtgtgtgtggggggagggggcgcattttggcttaaaatg
>XR_005640565.1
GCTATAGCCTGTACGCTGACGTCAATAAAAACAGTCATTTCCAACCAGTCTGCGCATTGACCGACCGTTCAAAACATTACCCACAGCATCGCGGCTGGAGCCACGCTAGACTACTCGACTGAAATAATTTTTCGCCGAGCCCGGAGAGCGGAGACAATGCGGACAAAACTCCATTGCAGGTGCAGGAGCATCTCGAACAACCCAGGTGGTGATGGCAGGAAAGGTCTGATCATGGCGGATgatcatcaccatcaccatcaccatcatccCACTGCTCTACGCTTTTAGCCTCTTTACAGTGCTGCCTTGTCTAATCATGTTCAAGCAGCATTGTACAGGGCTATGACAGCATAGAGAGCTGAGCTGCTCAGGCGCTGCGTTTCTCTGACCCTTTTGGATGGCGGCCAATAATGACATCATCCGTTAAAAACACTAAACGGCGATTTTTGCATGTAAGGATTGTTGGCAATAGACTGACTTGTCTTGTAATGTTCACGCTCGTGTCGTCAAAAAACTAAGATGCATTGCTTTTTcagtgttaaataaaaaaaaaagtggagcaCATTAAGTTCTCAGTGGGTTGAATTATTCAATGCAAACCTAAATCCCTTTGCAGCCAATACATTATTGAAACAGTTAGTCACATTGCATTGTGCTGCTTCTGTATGTCCATTGCATTTGAGTCCCACAGAGCTAATCATCCcctttttcttaatttttgttGTTGGACCTCTGTTCTGAATTTGATTTCCCCAAATCGTTTAAGACTATTTTAACCATCTGGATGAAAAAATATTCTGTTTGCTGCATGATAACACAGATAAACGTGAGAGGCACAAACTGCATATAGGGCATTGTTTGGGGAATATgtttgtactgtactgtatgtatggctGTAGAGTGCAACTAACGAttgttttcattgtcgattgctaaaaaaataaataaatcacaattcCA

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion
ko04721 Synaptic vesicle cycle
ko05110 Vibrio cholerae infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
TU145500 True 1078 lncRNA 0.42 2 27394158 27395983
XR_005640565.1 False 960 lncRNA 0.42 2 27394324 27396031

Neighbor

gene id symbol gene type direction distance location
LOC120567138 rab11fip5,LOC106925811,LOC103471510 coding downstream 143981 27234682 ~ 27250177 (-)
sfxn5b sfxn5,LOC100712369,LOC102194966,LOC101471447,LOC102299301 coding downstream 160871 27215856 ~ 27233287 (-)
smyd5 smyd5 coding downstream 179177 27204954 ~ 27214981 (-)
gfra4b LOC103367360,LOC104958665,LOC100709061,LOC102195730 coding downstream 215597 27132673 ~ 27178561 (-)
LOC120566770 NA coding downstream 479494 26910920 ~ 26914664 (-)
slc30a9 slc30a9,LOC103367187 coding upstream 339 27396370 ~ 27408837 (-)
gsr gsr coding upstream 14533 27410564 ~ 27420419 (-)
LOC120566264 NA coding upstream 36310 27432341 ~ 27445047 (-)
hs3st1 hs3st1,LOC102780858 coding upstream 82794 27478825 ~ 27481536 (-)
rab28 rab28 coding upstream 309181 27705212 ~ 27735519 (-)
G108194 NA non-coding downstream 302483 27091382 ~ 27091675 (-)
G108186 NA non-coding downstream 358073 27035515 ~ 27036085 (-)
LOC120566771 NA non-coding downstream 360991 27023653 ~ 27033167 (-)
G108182 enox2,LOC106949969,LOC107093408,LOC106918471,LOC106514441,LOC107379070 non-coding downstream 386121 27007812 ~ 27008037 (-)
G108179 NA non-coding downstream 430575 26963266 ~ 26963583 (-)
G108351 NA non-coding upstream 361762 27757793 ~ 27758695 (-)
G108352 NA non-coding upstream 375820 27771851 ~ 27772071 (-)
G108353 NA non-coding upstream 376645 27772676 ~ 27772981 (-)
LOC120566995 NA non-coding upstream 572033 27968064 ~ 27970362 (-)
G108422 NA non-coding upstream 585019 27981050 ~ 27981447 (-)
atp8a1 atp8a1,LOC102786596 other downstream 16037 27269370 ~ 27378121 (-)
LOC120567151 bend4,LOC102786006 other downstream 131457 27252395 ~ 27262701 (-)
LOC120566767 NA other downstream 298261 27068521 ~ 27095897 (-)
G108191 NA other downstream 328211 27065418 ~ 27065947 (-)
G108181 LOC103390578 other downstream 393147 26989264 ~ 27001011 (-)
aurkb fbxl12,LOC103367279,LOC104928693,LOC101076892,LOC103149573 other upstream 384101 27780132 ~ 27790211 (-)
LOC120567057 NA other upstream 441537 27837568 ~ 27839107 (-)
LOC120566991 NA other upstream 556225 27952256 ~ 27955694 (-)
G108433 neto1,LOC101071133 other upstream 625706 28021737 ~ 28023229 (-)
LOC120566547 NA other upstream 628539 28024570 ~ 28038700 (-)

Expression


Co-expression Network