XLOC_004702 (mfsd8)


Basic Information

Item Value
gene id XLOC_004702
gene name mfsd8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22628704 ~ 22645215 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009312
CAACACCAATGGACTTTAGACGGCGCCGTTCGGAATAACGCTAAATTACTCCAACACTGCTCTGCTCCAAAACGCTACAATGGGAATATTATACATCGATCTGCAGGAGTTTTCGACATACGTACTGTGCAGCTCCAGACAGTTTTCAGTCATGTTGAAGTAATTATAAACAACAAGAACTGCGCTTCAATGAGCTCGACGTTTCATTTCCAGAAGCTGCTTAGTCACTAATAATAATGCCACTTGAGGAGTCCGGTGAAAACACTCCGCTTCTCAGAGGCGAGATTATAAGTGATGGAGATACTGACAGAAGCAGATGGAGGTCCATCAGGGTCATGTACTTTACCATGTTCCTTAGCAGTGTTGgttttACGATTGTCATCACTTCAATTTGGCCCTATCTGAAGAAAATCGATGAAAGTGCAGATGCCAGTTTTTTGGGATGGGTGGTTGCTGCATACAGTTTGGGTCAGATGGTGGCCTCACCCTTCTTTGGATTGTGGTCCAATCACAGGCCTCGACGGGAGCCTCTAGTCTGCTCTATATTCATTAATGTCTCAGCCAACATTTACTACTCCTATGTCTACCTACCTCCCTCACACAACCAGATTCACATGCTCTTGGCTCGCACATTTGTGGGTATCGGAGCAGGTAATGTAGCAGTGGTGAGGTCCTATGTGGCTGGTGCCACTTCCCTGAAGGAAAGAACCAGTGCAATGGCAAACATGAGTGCCTGTCAAGCTCTCGGCTTTATACTTGGCCCAGCTCTGCAGGCTGTTTTGTCATTCATTGGAGAAACCGGCGTGAGTGTGGATGTCATCAAGCTTCAGGTTAACATGTACACAGCTCCAGCGCTGTTGGCGGCCTGCTTTGGGGTCATTAACATTCTGCTGGTTATTTTAGTCTTGAGGGAGCACTCTGTGGATGACCATGGGAACAGGATCCGTCCAATTAACTACACTCCAGAAGAGCGAGTAGATGTGCCTCCTGAGGTTGAAGGTGATATCGACCATATTGCAGTGTTCACATCTAACGTCCTTTTCTTCATCATTCTCTTTATTTTTGCTGTGTTTGAGACTATATCTACTCCTCTGTCAATGGACATGTTCGCATGGACAAGAAAGGAAGCTGTTTTGTATAATGGCATCATATTGGCTGCCATAGGCTTTGAGTCCATCCTTGTCTTTCTGGTGGTAAAAGTGGTTTCAGCACGGGTAGGAGATCGGCCACTGCTGCTTGGAGGCTTGATTCTCATATTTGTAGGGTTTTTTATGCTGTTGCCATGGGGAAATCAATATCCTAAAATACAGTGGACAGACATTAACAATAACACTATACCACCAATACAACTGGCACCCACCCCAGCCTCAAACAGTTCCCTGGAGCCCATTGGATGCCCGTCCGAACAGACCTGGTGCTTGTTCACCCCTGTAATTCATCTCGCACAGTACATCACCTCTGACATCCTGATCGGAGTGGGCTATCCCACATGCAACGTCATGTCCTACACTTTATACTCAAAGATACTGGGGCCCAAACCACAGGGAGTTTACATGGGATGGCTGACTGCATCAGGAAGTGGCGCGCGGACCCTCGGGCCTGTCTTTGTTTCACACTTCTACACCATCCTGGGACCTCGCTGGGCCTTCAGTGCCATATGTGGCATAGTGCTAGCTGCGATTGTAATGCTCAGCGCCATGTACAAGCGTCTCGTCGCCTTCTCCATACGCCATGGACGGATAGCGGAATGATGGCATGACTGACAGGTGCCCCTACCGACTTCTTGAAGAGACAGTTCATATGTATTACCCCTCAAGTGGTAACAAATCTTTTGTGTTTTCTGTTGGAAACAAAAAGAAGattatttgaagaatgttgtaatcTGGTAGCCATTGAATTTTATAGTAGGAACAAGAAGACTTTGGAAGTCCATAGGAAGCAGTTTCAGACATTCTTGACAATATCTTCTGTCTTGTTCAACAGAAGTTCAGCATATTATGacataattgtcattttttttggtcaactatccctttatagacatgaactttccctttaagtggGTCTGACTTAAACCTGTGAATGCTATTTAATACACGTTCATGCTAATCATGATTTCTTTAAAGTGATGATTCACCCAAAGCTAAGAATTCTGTCAGAATTTACTCCTTTACtcccttttttaattttaaaagacaaatttgaagaaagctggaaacctgtaaccattgacttccatagtatttatttttcctactatggaactcAATCTTTACAGCTTTCTTTTAAATCTCATAATCTTTTGTGTTGAACGGAATGAAGAAATCTCTAAAGATACCATTTaagagagagtaaatagtgactaaatgttcattttttgggggtgaactatccttttaagtagACTGTCTTCCATTTAAATGTGAATAACATTCTTTAGACTACTATTAACTGAGCTGTGAATTGATCTACTATTGGAGCAGAATGGCATGAATCATGTCACCGTTTAAAACGCACACAGTTGCACAATCTAAACAGAGCGACGTGAATAAACCACAGTATTGACTATGTTTGGCAGCTCCATGAGTTAATGAAGTATCGCAGGCTTATGCGGTTGTTTAAGCAAACACTTTACAGAttctgattgttttgtttttaataattgttgCTAATAAACTGAATTCCTGTTACTGTTAAACATTAACACACATTCAAATTTCTAAGCTGATTGAAGTCGATGttgaagtttgtttttaataacactAAGCTTAATGTACACTATGTTCTGAGCATTACTTGACTTTGGGTGCATCCTGAAGATTTAATATGATCACTGGTGATTGATGGGTGTTAAAGCACAGTATGGACTTTTCCTGAAAACCTTTAATAAACTAATGTTTTTAAAGA

Function

symbol description
mfsd8 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 7. Orthologous to human MFSD8 (major facilitator superfamily domain containing 8).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060818-29 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 7. Orthologous to human MFSD8 (major facilitator superfamily domain containing 8).

Ensembl:

ensembl_id ENSDARG00000103235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009312 True 2907 mRNA 0.42 12 22628704 22645215

Neighbor

gene id symbol gene type direction distance location
XLOC_004701 NA coding upstream 9582 22618388 ~ 22619122 (+)
XLOC_004699 capgb coding upstream 10624 22576404 ~ 22618080 (+)
XLOC_004700 CR925753.1 coding upstream 50174 22578404 ~ 22578530 (+)
XLOC_004698 polr2a coding upstream 55407 22560067 ~ 22573297 (+)
XLOC_004697 hdlbpb coding upstream 183643 22404108 ~ 22445061 (+)
XLOC_004703 si:dkey-219e21.4 coding downstream 12708 22657923 ~ 22664563 (+)
XLOC_004704 cdca9 coding downstream 27108 22672323 ~ 22815847 (+)
XLOC_004705 afap1 coding downstream 178004 22823219 ~ 22916314 (+)
XLOC_004706 rab18a coding downstream 276262 22921477 ~ 22933524 (+)
XLOC_004707 NA coding downstream 392232 23037447 ~ 23040091 (+)
XLOC_004696 NA non-coding upstream 323863 22258962 ~ 22304841 (+)
XLOC_004695 NA non-coding upstream 608934 22017946 ~ 22019770 (+)
XLOC_004694 NA non-coding upstream 829308 21757817 ~ 21799396 (+)
XLOC_004708 BX927205.1 non-coding downstream 464948 23110163 ~ 23110277 (+)
XLOC_004711 NA non-coding downstream 809214 23454429 ~ 23605722 (+)
XLOC_004712 BX005058.1 non-coding downstream 932051 23577266 ~ 23577391 (+)
XLOC_004713 NA non-coding downstream 1004677 23649892 ~ 23651056 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_03868669_03878824 MFSD8 coding CI01000063 null 3867597 ~ 3879843 (+)