LOC120566557 (limch1)


Basic Information

Item Value
gene id LOC120566557
gene name limch1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 31419879 ~ 31485976 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU146377
TGTAGATGATTTCTACCGCCAAAATATACCATTGACATATGAAATATACACGCATATTCACTTCCGGTTGGTGGTGGCGTTTTGGTTTGTTGCAGCCAACAGTCTGCAACTTGAAACACCCTTTAAATTGTGCAGCCTTTGGAATCGTTTTCATTTCAGTTTCATAAATGAGTCTTGTGGAATCTGGAAATGGGTTCAAGTCGGCGACCGCAACAGGAGCGATACTGGAGAGCAGCAACTGGTTCGTTCGCCTCgccggtgctgctgctgctgctacacctACAACCGACGGAGGAGAACGGGCTGACCGACACAATTCACGTGTAATCTCGGTGGAATAACGCGCGTTGAGCTGCTTTTACACCTTTTTACAGGCTTTACAATACTTGGAGAGCAGATCTTCTTCGCCAATGGCAAGTCCGGTTGCAGACATAGGACAGTCTCATCAGCATCACCCTGTGACCGACTCGGCCGCAGACTCAGCGTTTCAGGAGGCGCAGACATGGATAGAGgctGCGACAGGGAGATGCTTTGGTGACAAGGACTTCAGAGGGGGTTTGGAGAATGGGATTTTGCTATGCGAGTTGTTGAGCTCTATTAAACCCGGCCTGGTGAAGAAAATCAACAGACTTCCGACACCCATAGCTGGCCTGGACAACCTCAGTGTGTTTCTGCGTGGCTGTGAAGAGTTGGGACTGAAAGGCTCCCAGCTGTTTGACCCtggagacctgcaggacccgtcGGCACCGCCACAAatgggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcc
>TU146378
CGAGAACCTgggaacaggagaggagagctCAGCTCAGGTTGCATCCAACAAAGAGTTTATCTGAGAGCAgatggggagagagggagggcgaCTGAGAGGATGAGGAGAGAGTGAAAAGTagtaaagaagagaaagaggaatgaTCGAGGAAAAGCAGGTGAAGGAGGGGAAGATAAAAAGGAAGTCACTTGATGGAAGCAAAAGGTGAAGAGTTAAAGTTGGAGTAATCTGAGAGAGGAGGCTCACTAAAGCCGTCCACAAAACCTGGTGGTGTCACGTTTCTGTCGAGCAGGACAACCTCAGTGTGTTTCTGCGTGGCTGTGAAGAGTTGGGACTGAAAGGCTCCCAGCTGTTTGACCCtggagacctgcaggacccgtcGGCACCGCCACAAatgggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcc
>TU146379
TTAACTAGAGAGGGACTTGATATACAGCCGGCAGCTCTTTGTGCACCTCTCCATACCATTTTCAGGATTTATCGTGAAAGAAAGATGTGAAAGGAGTGTTGATAAAGgctGCGACAGGGAGATGCTTTGGTGACAAGGACTTCAGAGGGGGTTTGGAGAATGGGATTTTGCTATGCGAGTTGTTGAGCTCTATTAAACCCGGCCTGGTGAAGAAAATCAACAGACTTCCGACACCCATAGCTGGCCTGGACAACCTCAGTGTGTTTCTGCGTGGCTGTGAAGAGTTGGGACTGAAAGGCTCCCAGCTGTTTGACCCtggagacctgcaggacccgtcGGCACCGCCACAAatgggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcc
>XM_039813079.1
CCTTTAAATTGTGCAGCCTTTGGAATCGTTTTCATTTCAGTTTCATAAATGAGTCTTGTGGAATCTGGAAATGGGTTCAAGTCGGCGACCGCAACAGGAGCGATACTGGAGAGCAGCAACTGGTTCGTTCGCCTCgccggtgctgctgctgctgctacacctACAACCGACGGAGGAGAACGGGCTGACCGACACAATTCACGTGTAATCTCGGTGGAATAACGCGCGTTGAGCTGCTTTTACACCTTTTTACAGGCTTTACAATACTTGGAGAGCAGATCTTCTTCGCCAATGGCAAGTCCGGTTGCAGACATAGGACAGTCTCATCAGCATCACCCTGTGACCGACTCGGCCGCAGACTCAGCGTTTCAGGAGGCGCAGACATGGATAGAGgctGCGACAGGGAGATGCTTTGGTGACAAGGACTTCAGAGGGGGTTTGGAGAATGGGATTTTGCTATGCGAGTTGTTGAGCTCTATTAAACCCGGCCTGGTGAAGAAAATCAACAGACTTCCGACACCCATAGCTGGCCTGGACAACCTCAGTGTGTTTCTGCGTGGCTGTGAAGAGTTGGGACTGAAAGGCTCCCAGCTGTTTGACCCtggagacctgcaggacccgtcGGCACCGCCACAAatgggTTCTAATCACCATCTACTGGTTGGGTCGTGCTGCCAACGGCTGTACCTCCTACAACGGTCCCACGCTGGACCTGAAAGAGTTTGA

Function

symbol description
limch1 Enables myosin II head/neck binding activity. Involved in several processes, including cytoplasmic actin-based contraction involved in cell motility; positive regulation of stress fiber assembly; and regulation of focal adhesion assembly. Located in stress fiber. Colocalizes with myosin II complex.

NR:

description
PREDICTED: LIM and calponin homology domains-containing protein 1 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146377 True 838 TUCP 0.51 5 31431020 31485976
TU146378 False 477 lncRNA 0.51 2 31431020 31432903
TU146379 False 433 lncRNA 0.50 4 31431020 31442247
XM_039813079.1 False 726 mRNA 0.53 6 31419879 31485857

Neighbor

gene id symbol gene type direction distance location
tmem33 tmem33 coding downstream 87330 31322365 ~ 31332549 (-)
bbs7 bbs7,LOC102788539 coding downstream 98667 31315122 ~ 31321212 (-)
ccna2 ccna2,LOC101477005 coding downstream 106712 31309545 ~ 31313167 (-)
anxa5a anxa5 coding downstream 119384 31271226 ~ 31300495 (-)
fstl5 NA coding downstream 445594 30799237 ~ 30974285 (-)
pcgf1 pcgf1,LOC107589114 coding upstream 246001 31731977 ~ 31739944 (-)
fgf24 LOC104951404,LOC106525890,LOC103137301,LOC103363938,LOC105931924 coding upstream 297789 31783765 ~ 31795704 (-)
npm1b LOC103363949,LOC108236678 coding upstream 329016 31814992 ~ 31833319 (-)
cetn4 cetn4,LOC108438842 coding upstream 502912 31988888 ~ 31993101 (-)
nudt6 nudt6 coding upstream 526121 32012097 ~ 32025028 (-)
LOC120566353 NA non-coding downstream 39526 31375354 ~ 31380353 (-)
G108854 LOC102777869,LOC101473425,LOC102203600 non-coding downstream 184062 31220092 ~ 31235817 (-)
G108840 NA non-coding downstream 244420 31174863 ~ 31175459 (-)
G108828 NA non-coding downstream 288220 31130263 ~ 31131659 (-)
G108810 qdpr non-coding downstream 415393 31002648 ~ 31004486 (-)
G108977 NA non-coding upstream 409267 31895243 ~ 31966892 (-)
G109007 NA non-coding upstream 508170 31994146 ~ 31996173 (-)
G109092 NA non-coding upstream 1304074 32790050 ~ 32827346 (-)
G109141 NA non-coding upstream 1429780 32915756 ~ 32961910 (-)
G109150 ncbp1 non-coding upstream 1471235 32957211 ~ 32958202 (-)
G108781 rapgef2 other downstream 749030 30669531 ~ 30670849 (-)
G108777 rapgef2 other downstream 758256 30660912 ~ 30661623 (-)
gask1b fam198b,LOC102776406 other downstream 1063023 30346978 ~ 30356856 (-)
cxcl14 cxcl14 other downstream 2611885 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 2624371 28714863 ~ 28795508 (-)
tlx2 tlx2,LOC107396138 other upstream 353566 31839542 ~ 31851757 (-)
hopx hopx other upstream 1305405 32791381 ~ 32893558 (-)
slc49a3 mfsd7 other upstream 1476061 32962037 ~ 32979661 (-)
glra1 glra1 other upstream 2929721 34415697 ~ 34636491 (-)
G109390 sparc other upstream 2930308 34416284 ~ 34463215 (-)

Expression


Co-expression Network