tlx2 (tlx2,LOC107396138)


Basic Information

Item Value
gene id tlx2
gene name tlx2,LOC107396138
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 31839542 ~ 31851757 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU146455
GTCTCTTTGTGACTTCTCCTTGGACTTCCTTTCTGTACAAACCAGTGTGCTGTTTGGTTTTCAAAATCTGGCAGGGCAATATTAGCTCTTCCCTCTCACCCTTCTCCGTGACCCGTCGTATCGGCCACCCTTACCAGAACCGGACGCCGCCCAAGAGGAAAAAGCCTCGCACCTCCTTCAGCCGAGTTCAGATCTGCGAACTGGAGAAACGTTTCCATCGGCAGAAGTACCTGGCATCGGCTGAGCGCGCCACCTTGGCCAAGGCCCTGAAGATGACAGATGCACAAGTCAAGACCTGGTTTCAGAACAGACGGACAAAATGGCGgagacagactgcagaggagagagaggccgAGAGGCAGCAGGCCAACCGACTGATGCTGCAGCTTCAGCAGGAAGCGTTCCAGAAGACGTTGAGCCAGCCTCTGCAGCCGGATCCGCTCTGCCTGCACAACTCCTCCCTGTACGCCCTGCAGAACCTGCAGCCCTGGGCAGACGACAATAAGCTGACGGTCTAAAAGAGAGGAGGGCACTTTATCCATAAGTGCCAGGAAACAAATGGACACCTCTGTACATGCCCAACTATCAAGACTGTCCCCTCTTTTGCCTCTGGATCCCTCATGAGGCAGCAGAGACTCTCTGCCAATAATGGCAAAAAAAGACCTCCTGTTTTTCGCTTTCAACTTTGTACAATGTAGTAAATGCATGTTTCAACCCTTTTCTGTGTGCACTCGGAGGTACCATTGAAGTCAGCTGCCATTGAGGTGGACTGCAGTGTTCAAGTGGTAGTGGATTGGTGGAACTCCCGATGACGAATTCCTCATTATTATGTTCAATTTAAAGGTGTTTTATATTAAATGATATTGTGACTTTTTGAAAAGATGACAAACACTCTCtgttctccttccctctctttgtctctggtTGGGTTCTTTCACTCACTGCCTGTTTGTTGTTTGTCACCATTATGAAAACCACGCAATAATACTTTATGA
>XM_039812680.1
gtgATCAGGGTGCCGGCCCACAGACCCATGCCGCCTCCGCCGCCGCCCGCCGCTGCTGCACCTCATCCGCCCCCTTCGGCACATCCGCCATGCATCGGACCCGGCATCGCCTCGGTACCCGGGATGGGCATGGGGAATGCGGCAAACTTCACCTTCCCGTGGATGGAGAGCAGTAGGAGGTTTGCAAAGGACAAATTGACAGgggagcaggcagaggagagccGAGCTGGAGAGGCCACAGGGGGGCCGGGGTCTGCCGggtccctctgtcctctccccAAGGGAGACATCGGCAGGGTCCCTGTCTGGAGCACTATGGAGACATTAGCCAAATGCTATTACCCCGAGCTCGCTCACCTGCGAGACGGCAATGGCCTTCTAGCAGACTATCCTTTTCCAAAGGGGGCTTGCCAAGCTTCCCTCTCACCCTTCTCCGTGACCCGTCGTATCGGCCACCCTTACCAGAACCGGACGCCGCCCAAGAGGAAAAAGCCTCGCACCTCCTTCAGCCGAGTTCAGATCTGCGAACTGGAGAAACGTTTCCATCGGCAGAAGTACCTGGCATCGGCTGAGCGCGCCACCTTGGCCAAGGCCCTGAAGATGACAGATGCACAAGTCAAGACCTGGTTTCAGAACAGACGGACAAAATGGCGgagacagactgcagaggagagagaggccgAGAGGCAGCAGGCCAACCGACTGATGCTGCAGCTTCAGCAGGAAGCGTTCCAGAAGACGTTGAGCCAGCCTCTGCAGCCGGATCCGCTCTGCCTGCACAACTCCTCCCTGTACGCCCTGCAGAACCTGCAGCCCTGGGCAGACGACAATAAGCAACATGGGGGAGCgtgtgtagagagagacagCTATCTGTTACTGCCAAGACCTACAAAACACTGTATGCAGACTTGACAGCACAGGAGCCGCACCGCTGTTTGTCAAACTGACGGTCTAAAAGAGAGGAGGGCACTTTATCCATAAGTGCCAGGAAACAAATGGACACCTCTGTACATGCCCAACTATCAAGACTGTCCCCTCTTTTGCCTCTGGATCCCTCATGAGGCAGCAGAGACTCTCTGCCAATAATGGCAAAAAAAGACCTCCTGTTTTTCGCTTTCAACTTTGTACAATGTAGTAAATGCATGTTTCAACCCTTTTCTGTGTGCACTCGGAGGTACCATTGAAGTCAGCTGCCATTGAGGTGGACTGCAGTGTTCAAGTGGTAGTGGATTGGTGGAACTCCCGATGACGAATTCCTCATTATTATGTTCAATTTAAAGGTGTTTTATATTAAATGATATTGTGACTTTTTGAAAAGATGACAAA
>XM_039812681.1
gtgATCAGGGTGCCGGCCCACAGACCCATGCCGCCTCCGCCGCCGCCCGCCGCTGCTGCACCTCATCCGCCCCCTTCGGCACATCCGCCATGCATCGGACCCGGCATCGCCTCGGTACCCGGGATGGGCATGGGGAATGCGGCAAACTTCACCTTCCCGTGGATGGAGAGCAGTAGGAGGTTTGCAAAGGACAAATTGACAGgggagcaggcagaggagagccGAGCTGGAGAGGCCACAGGGGGGCCGGGGTCTGCCGggtccctctgtcctctccccAAGGGAGACATCGGCAGGGTCCCTGTCTGGAGCACTATGGAGACATTAGCCAAATGCTATTACCCCGAGCTCGCTCACCTGCGAGACGGCAATGGCCTTCTAGCAGACTATCCTTTTCCAAAGGGGGCTTGCCAAGCTTCCCTCTCACCCTTCTCCGTGACCCGTCGTATCGGCCACCCTTACCAGAACCGGACGCCGCCCAAGAGGAAAAAGCCTCGCACCTCCTTCAGCCGAGTTCAGATCTGCGAACTGGAGAAACGTTTCCATCGGCAGAAGTACCTGGCATCGGCTGAGCGCGCCACCTTGGCCAAGGCCCTGAAGATGACAGATGCACAAGTCAAGACCTGGTTTCAGAACAGACGGACAAAATGGCGgagacagactgcagaggagagagaggccgAGAGGCAGCAGGCCAACCGACTGATGCTGCAGCTTCAGCAGGAAGCGTTCCAGAAGACGTTGAGCCAGCCTCTGCAGCCGGATCCGCTCTGCCTGCACAACTCCTCCCTGTACGCCCTGCAGAACCTGCAGCCCTGGGCAGACGACAATAAGCTGACGGTCTAAAAGAGAGGAGGGCACTTTATCCATAAGTGCCAGGAAACAAATGGACACCTCTGTACATGCCCAACTATCAAGACTGTCCCCTCTTTTGCCTCTGGATCCCTCATGAGGCAGCAGAGACTCTCTGCCAATAATGGCAAAAAAAGACCTCCTGTTTTTCGCTTTCAACTTTGTACAATGTAGTAAATGCATGTTTCAACCCTTTTCTGTGTGCACTCGGAGGTACCATTGAAGTCAGCTGCCATTGAGGTGGACTGCAGTGTTCAAGTGGTAGTGGATTGGTGGAACTCCCGATGACGAATTCCTCATTATTATGTTCAATTTAAAGGTGTTTTATATTAAATGATATTGTGACTTTTTGAAAAGATGACAAA
>XM_039812682.1
gtgATCAGGGTGCCGGCCCACAGACCCATGCCGCCTCCGCCGCCGCCCGCCGCTGCTGCACCTCATCCGCCCCCTTCGGCACATCCGCCATGCATCGGACCCGGCATCGCCTCGGTACCCGGGATGGGCATGGGGAATGCGGCAAACTTCACCTTCCCGTGGATGGAGAGCAGTAGGAGGTTTGCAAAGGACAAATTGACAGCTTCCCTCTCACCCTTCTCCGTGACCCGTCGTATCGGCCACCCTTACCAGAACCGGACGCCGCCCAAGAGGAAAAAGCCTCGCACCTCCTTCAGCCGAGTTCAGATCTGCGAACTGGAGAAACGTTTCCATCGGCAGAAGTACCTGGCATCGGCTGAGCGCGCCACCTTGGCCAAGGCCCTGAAGATGACAGATGCACAAGTCAAGACCTGGTTTCAGAACAGACGGACAAAATGGCGgagacagactgcagaggagagagaggccgAGAGGCAGCAGGCCAACCGACTGATGCTGCAGCTTCAGCAGGAAGCGTTCCAGAAGACGTTGAGCCAGCCTCTGCAGCCGGATCCGCTCTGCCTGCACAACTCCTCCCTGTACGCCCTGCAGAACCTGCAGCCCTGGGCAGACGACAATAAGCAACATGGGGGAGCgtgtgtagagagagacagCTATCTGTTACTGCCAAGACCTACAAAACACTGTATGCAGACTTGACAGCACAGGAGCCGCACCGCTGTTTGTCAAACTGACGGTCTAAAAGAGAGGAGGGCACTTTATCCATAAGTGCCAGGAAACAAATGGACACCTCTGTACATGCCCAACTATCAAGACTGTCCCCTCTTTTGCCTCTGGATCCCTCATGAGGCAGCAGAGACTCTCTGCCAATAATGGCAAAAAAAGACCTCCTGTTTTTCGCTTTCAACTTTGTACAATGTAGTAAATGCATGTTTCAACCCTTTTCTGTGTGCACTCGGAGGTACCATTGAAGTCAGCTGCCATTGAGGTGGACTGCAGTGTTCAAGTGGTAGTGGATTGGTGGAACTCCCGATGACGAATTCCTCATTATTATGTTCAATTTAAAGGTGTTTTATATTAAATGATATTGTGACTTTTTGAAAAGATGACAAA

Function

symbol description
tlx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear development. Predicted to be active in nucleus. Is expressed in Rohon-Beard neurons; inner ear; and statoacoustic (VIII) ganglion. Orthologous to human TLX2 (T cell leukemia homeobox 2).

NR:

description
PREDICTED: T-cell leukemia homeobox protein 2 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU146455 False 995 TUCP 0.49 4 31839542 31844234
XM_039812680.1 True 1326 mRNA 0.55 6 31839648 31851757
XM_039812681.1 False 1217 mRNA 0.55 5 31839648 31851757
XM_039812682.1 False 1113 mRNA 0.54 5 31839648 31851757

Neighbor

gene id symbol gene type direction distance location
npm1b LOC103363949,LOC108236678 coding downstream 6223 31814992 ~ 31833319 (-)
fgf24 LOC104951404,LOC106525890,LOC103137301,LOC103363938,LOC105931924 coding downstream 43838 31783765 ~ 31795704 (-)
pcgf1 pcgf1,LOC107589114 coding downstream 99598 31731977 ~ 31739944 (-)
tmem33 tmem33 coding downstream 506993 31322365 ~ 31332549 (-)
bbs7 bbs7,LOC102788539 coding downstream 518330 31315122 ~ 31321212 (-)
cetn4 cetn4,LOC108438842 coding upstream 137131 31988888 ~ 31993101 (-)
nudt6 nudt6 coding upstream 160340 32012097 ~ 32025028 (-)
ankrd50 ankrd50 coding upstream 461792 32313549 ~ 32354995 (-)
LOC120567032 NA coding upstream 577489 32429246 ~ 32436812 (-)
LOC120567451 NA coding upstream 953617 32805374 ~ 32823497 (-)
LOC120566353 NA non-coding downstream 459189 31375354 ~ 31380353 (-)
G108854 LOC102777869,LOC101473425,LOC102203600 non-coding downstream 603725 31220092 ~ 31235817 (-)
G108840 NA non-coding downstream 664083 31174863 ~ 31175459 (-)
G108828 NA non-coding downstream 707883 31130263 ~ 31131659 (-)
G108810 qdpr non-coding downstream 835056 31002648 ~ 31004486 (-)
G108977 NA non-coding upstream 43486 31895243 ~ 31966892 (-)
G109007 NA non-coding upstream 142389 31994146 ~ 31996173 (-)
G109092 NA non-coding upstream 938293 32790050 ~ 32827346 (-)
G109141 NA non-coding upstream 1063999 32915756 ~ 32961910 (-)
G109150 ncbp1 non-coding upstream 1105454 32957211 ~ 32958202 (-)
LOC120566557 limch1 other downstream 353566 31419879 ~ 31485976 (-)
LOC120566409 limch1 other downstream 416061 31385090 ~ 31423481 (-)
G108781 rapgef2 other downstream 1168693 30669531 ~ 30670849 (-)
G108777 rapgef2 other downstream 1177919 30660912 ~ 30661623 (-)
gask1b fam198b,LOC102776406 other downstream 1482686 30346978 ~ 30356856 (-)
hopx hopx other upstream 939624 32791381 ~ 32893558 (-)
slc49a3 mfsd7 other upstream 1110280 32962037 ~ 32979661 (-)
glra1 glra1 other upstream 2563940 34415697 ~ 34636491 (-)
G109390 sparc other upstream 2564527 34416284 ~ 34463215 (-)
shtn3 LOC101479891,LOC102312827,LOC102206776,LOC107087416 other upstream 3292205 35143962 ~ 35207015 (-)

Expression


Co-expression Network