hopx (hopx)


Basic Information

Item Value
gene id hopx
gene name hopx
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 32791381 ~ 32893558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU146618
CTTCATTCGCACACTCCCGCCGAACTGCCAGAGTGCCCCCGCCGCTCCACGCCTCTCCATCTCCGCAGCGCGctgcctctcttctcctctgcgCGTCCAGCTGTGCGCACATCTCGCTGCGGAGCTCCCAACCAACCAGGGCTGAAGCTCGAAACGGTTTCATAAAAGACTGGAGAGCAGAAGGGGAGAACAGGAATATGACTTCTAAAGCGATGGAGTGTATGAAGCTGTCGGAGGAACAGATCAAAGTGCTGGAGGACAGTTTCAAAAAAGTCAGCAAGTATCCGGACGGGACGACGCTCATGTTGATCGCTGCGGAGTGCGGGCTGTCAGAGGAGGAAACACAAAAATGGTTCAAGCTACGTAACGCACAGTGGAGGCAGGCGGAGGGTCTTCCGGCTGAACTCGGATCAGTGTTGGACTGAGACTGAAGAAGAATCTGCCTGAAGCTCTGCGCTGATCTTGTTTCTCCTGGACAAACTGACCCTACCCCTATTTCCTCATACGCTTCCCCTCACCATGTGTCTCCCTTTTTGTATCTATGAAGCTATTTTAACTTACTGTACGGAATGTgaaggtgtttgtgtgttgttgccaATATATCCGCCATGTTTACAGAAATAAAGATATTGTTATTATAAGTTAAAATGAaaaaaaaaaaaaaa
>TU146621
CTTCATTCGCACACTCCCGCCGAACTGCCAGAGTGCCCCCGCCGCTCCACGCCTCTCCATCTCCGCAGCGCGctgcctctcttctcctctgcgCGTCCAGCTGTGCGCACATCTCGCTGCGGAGCTCCCAACCAACCAGGGCTGAAGCTCGAAACGGTTTCATAAAAGACTGGAGAGCAGAAGGGGAGAACAGGAATATGACTTCTAAAGCGATGGAGTGTATGAAGCTGTCGGAGGAACAGATCAAAGTGCTGGAGGACAGTTTCAAAAAAGTCAGCAAGTATCCGGACGGGACGACGCTCATGTTGATCGCTGCGGAGTGCGGGCTGTCAGAGGAGGAAACACAAAAATGGTTCAAGCTACGTAACGCACAGTGGAGGCAGGCGGAGGGTCTTCCGGCTGAACTCGGATCAGTGTTGGACTGAGACTGAAGAAGAATCTGCCTGAAGCTCTGCGCTGATCTTGTTTCTCCTGGACAAACTGACCCTACCCCTATTTCCTCATACGCTTCCCCTCACCATGTGTCTCCCTTTTTGTATCTATGAAGCTATTTTAACTTACTGTACGGAATGTgaaggtgtttgtgtgttgttgccaATATATCCGCCATGTTTACAGAAATAAAGATATTGTTATTATAAGTaaaaaaaaaaaaaa
>XM_039814394.1
acacccaccaacacacacacacactgcctccaCTTCATTCGCACACTCCCGCCGAACTGCCAGAGTGCCCCCGCCGCTCCACGCCTCTCCATCTCCGCAGCGCGctgcctctcttctcctctgcgCGTCCAGCTGTGCGCACATCTCGCTGCGGAGCTCCCAACCAACCAGGGCTGAAGCTCGAAACGGTTTCATAAAAGACTGGAGAGCAGAAGGGGAGAACAGGAATATGACTTCTAAAGCGATGGAGTGTATGAAGCTGTCGGAGGAACAGATCAAAGTGCTGGAGGACAGTTTCAAAAAAGTCAGCAAGTATCCGGACGGGACGACGCTCATGTTGATCGCTGCGGAGTGCGGGCTGTCAGAGGAGGAAACACAAAAATGGTTCAAGCTACGTAACGCACAGTGGAGGCAGGCGGAGGGTCTTCCGGCTGAACTCGGATCAGTGTTGGACTGAGACTGAAGAAGAATCTGCCTGAAGCTCTGCGCTGATCTTGTTTCTCCTGGACAAACTGACCCTACCCCTATTTCCTCATACGCTTCCCCTCACCATGTGTCTCCCTTTTTGTATCTATGAAGCTATTTTAACTTACTGTACGGAATGTgaaggtgtttgtgtgttgttgccaATATATCCGCCATGTTTACAGAAATAAAGATATTGTTATTATAAGTTAAAA

Function

symbol description
hopx Predicted to enable DNA binding activity. Acts upstream of or within heart development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in hatching gland; heart; sensory system; and solid lens vesicle. Orthologous to human HOPX (HOP homeobox).

NR:

description
PREDICTED: homeodomain-only protein

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24897 HOPX; homeodomain-only protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU146618 False 665 lncRNA 0.49 3 32791381 32893526
TU146621 False 657 lncRNA 0.50 3 32791381 32893526
XM_039814394.1 True 680 mRNA 0.51 2 32885870 32893558

Neighbor

gene id symbol gene type direction distance location
LOC120567032 NA coding downstream 354569 32429246 ~ 32436812 (-)
ankrd50 ankrd50 coding downstream 436386 32313549 ~ 32354995 (-)
nudt6 nudt6 coding downstream 766353 32012097 ~ 32025028 (-)
cetn4 cetn4,LOC108438842 coding downstream 798280 31988888 ~ 31993101 (-)
npm1b LOC103363949,LOC108236678 coding downstream 958062 31814992 ~ 31833319 (-)
sec24b LOC103364574,LOC101468464 coding upstream 17914 32911472 ~ 32937857 (-)
LOC120566731 tstd2,LOC107562377 coding upstream 44635 32938193 ~ 32945497 (-)
LOC120567091 cplx1,cplx2,LOC104949618,LOC103391058 coding upstream 296572 33190130 ~ 33249208 (-)
arhgef37 arhgef37 coding upstream 476761 33370319 ~ 33400799 (-)
LOC120566559 LOC103353868,LOC102797758 coding upstream 524853 33418411 ~ 33435035 (-)
G109007 NA non-coding downstream 795208 31994146 ~ 31996173 (-)
G108977 NA non-coding downstream 824489 31895243 ~ 31966892 (-)
LOC120566353 NA non-coding downstream 1411028 31375354 ~ 31380353 (-)
G108854 LOC102777869,LOC101473425,LOC102203600 non-coding downstream 1555564 31220092 ~ 31235817 (-)
G108840 NA non-coding downstream 1615922 31174863 ~ 31175459 (-)
G109141 NA non-coding upstream 22198 32915756 ~ 32961910 (-)
G109150 ncbp1 non-coding upstream 63653 32957211 ~ 32958202 (-)
G109151 NA non-coding upstream 71739 32965297 ~ 32965668 (-)
LOC120566733 NA non-coding upstream 82227 32975785 ~ 32978257 (-)
G109152 NA non-coding upstream 162250 33055808 ~ 33056354 (-)
tlx2 tlx2,LOC107396138 other downstream 939624 31839542 ~ 31851757 (-)
LOC120566557 limch1 other downstream 1305405 31419879 ~ 31485976 (-)
LOC120566409 limch1 other downstream 1367900 31385090 ~ 31423481 (-)
G108781 rapgef2 other downstream 2120532 30669531 ~ 30670849 (-)
G108777 rapgef2 other downstream 2129758 30660912 ~ 30661623 (-)
slc49a3 mfsd7 other upstream 68479 32962037 ~ 32979661 (-)
glra1 glra1 other upstream 1522139 34415697 ~ 34636491 (-)
G109390 sparc other upstream 1522726 34416284 ~ 34463215 (-)
shtn3 LOC101479891,LOC102312827,LOC102206776,LOC107087416 other upstream 2250404 35143962 ~ 35207015 (-)
G109589 NA other upstream 2995821 35889379 ~ 35889709 (-)

Expression


Co-expression Network