XLOC_004703 (si:dkey-219e21.4)


Basic Information

Item Value
gene id XLOC_004703
gene name si:dkey-219e21.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22657923 ~ 22664563 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009313
AGTGAGTTGATAAATGGCAGAGAAAGACTTCAGGCCTTTATCAGAGGAAACCAGTTCCTTCTGTCTGGCTACTGAGGCTCGTTCGGGGGTACAAGTCACGCAACCCTTCCCACGCTCTCCAAAACTAATCAAGAGAACTGGAGCCGTCTCTCCAAAACCCTTTGAgCTGCCAGTCTTGTTGGAGGACTTGAAGAAGGAGAGGAAAAAAACAGAATCTCATCTGGAATCTGTTAAAAAGCGGCAAGCAAACCTCACATAACTGCTGAATTGTTCATCTCTGGTGAAGACGAGTTCAGAGGCGATGAAGCAGCAGGTACAGGAGTGCTACGAGGGTCTACATTTGGCTCTGCAGGAGGATGAGCGGGCCGTTCTGGACATGATAGAGCAAGACCGCCGGGAAACCAGCAGCAAACTAAATCGAATTCTTCAAGACTGGAATCAGCACCTCTGTCTCCTGCAGAAGCACATCTCCTGCATGCAGTTGGTACAAAGCCCAGAGGAGGCCGTGAAGCAGCCATTTCCTGAGGATTTTACATTGGCAGGCTGTCGTAAGAAGCCGGACCCCGCTGAAGGGGAAATCAAAATGAATGAGGAAAGAATCCTGAAGCTCATGAAGGTTCTTAGAAACATCTCAAAAGATCTGAAGGCCCAGCTACAAAGAAAGAGCCTGCTTCTGG
>TCONS_00009314
TGAGTTGATAAATGGCAGAGAAAGACTTCAGGCCTTTATCAGAGGAAACCAGTTCCTTCTGTCTGGCTACTGAGGCTCGTTCGGGGGTACAAGTCACGCAACCCTTCCCACGCTCTCCAAAACTAATCAAGAGAACTGGAGCCGTCTCTCCAAAACCCTTTGAgCTGCCAGTCTTGTTGGAGGACTTGAAGAAGGAGAGGAAAAAAACAGAATCTCATCTGGAATCTGTTAAAAAGCGGCAAGCAAACCTCACAACGAGTTCAGAGGCGATGAAGCAGCAGGTACAGGAGTGCTACGAGGGTCTACATTTGGCTCTGCAGGAGGATGAGCGGGCCGTTCTGGACATGATAGAGCAAGACCGCCGGGAAACCAGCAGCAAACTAAATCGAATTCTTCAAGACTGGAATCAGCACCTCTGTCTCCTGCAGAAGCACATCTCCTGCATGCAGTTGGTACAAAGCCCAGAGGAGGCCGTGAAGCAGCCATTTCCTGAGGATTTTACATTGGCAGGCTGTCGTAAGAAGCCGGACCCCGCTGAAGGGGAAATCAAAATGAATGAGGAAAGAATCCTGAAGCTCATGAAGGTTCTTAGAAACATCTCAAAAGATCTGAAGGCCCAGCTACAAAGAAAGAGCCTGCTTCTGGACTCCTGTAATGTGGCGATTGACAATCAGACCTGCCACAAGCAGATCAAGGTGAGCTCAGATGGACGTAGTCTGTGTCTGTCCCCAGAGGAGCGCGGCGTCCCCAATGAGCCTGTGAGGTTTGATCAGCTATACTGTGCACTGGGATCTACTGCTATTAAATCTGGCCAGCAGTACTGGGAGGTGGATGTGCACTGCTGTCCGTCATGGGCTGTGGGCATTACCTACGGCAGCTTGCAGAGGAGAGGAAGAGACAAAGGAGCCAAACTGGGGCGAAACAGGTGCTCGTGGAGTCTTGAGTTTCAGAATGGGAATCTGACAGCCTGGCATAATGATCGACACATGCCGCTACCCGTCACTGCAGCTCGGGCAGCACCGAACAGAGTCGGGGTGTTTGTGAAGTACCAGAAGGGTCGTGTGGTGTTCTATGATGCTGAGAGCATGAGGACGCTGCAGGAGTTTTCAGCAGTGCAGACAGCTGTGTTTGACAGAGCGCATCATCAGTTTACTGAGCCGCTTTACCCAGCGTTTCGCTTCTTTTCACCCAAAGATAAGCATACAGGCCATCATCATATGCAAATATGTGACCTTAGTCTTTaatacagggtgtccgcggggtcttaaaatgtctttaatttcaAAA

Function

symbol description
si:dkey-219e21.4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-59 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000096804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009313 False 677 nonsense_mediated_decay 0.49 5 22657923 22661380
TCONS_00009314 True 1287 mRNA 0.50 6 22657925 22664563

Neighbor

gene id symbol gene type direction distance location
XLOC_004702 mfsd8 coding upstream 12708 22628704 ~ 22645215 (+)
XLOC_004701 NA coding upstream 38801 22618388 ~ 22619122 (+)
XLOC_004699 capgb coding upstream 39843 22576404 ~ 22618080 (+)
XLOC_004700 CR925753.1 coding upstream 79393 22578404 ~ 22578530 (+)
XLOC_004698 polr2a coding upstream 84626 22560067 ~ 22573297 (+)
XLOC_004704 cdca9 coding downstream 7760 22672323 ~ 22815847 (+)
XLOC_004705 afap1 coding downstream 158656 22823219 ~ 22916314 (+)
XLOC_004706 rab18a coding downstream 256914 22921477 ~ 22933524 (+)
XLOC_004707 NA coding downstream 372884 23037447 ~ 23040091 (+)
XLOC_004708 BX927205.1 coding downstream 445600 23110163 ~ 23110277 (+)
XLOC_004696 NA non-coding upstream 353082 22258962 ~ 22304841 (+)
XLOC_004695 NA non-coding upstream 638153 22017946 ~ 22019770 (+)
XLOC_004694 NA non-coding upstream 858527 21757817 ~ 21799396 (+)
XLOC_004711 NA non-coding downstream 789866 23454429 ~ 23605722 (+)
XLOC_004712 BX005058.1 non-coding downstream 912703 23577266 ~ 23577391 (+)
XLOC_004713 NA non-coding downstream 985329 23649892 ~ 23651056 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_03886948_03891089 NA coding CI01000063 null 3886687 ~ 3891819 (+)