foxi3b (foxi1,LOC103355701,LOC103470887,LOC105917079,LOC103132071,LOC106937269)


Basic Information

Item Value
gene id foxi3b
gene name foxi1,LOC103355701,LOC103470887,LOC105917079,LOC103132071,LOC106937269
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 445633 ~ 447959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812562.1
ACATCTTGACACAAAGCAAGGGCAAGCAGGCAAGAAAGGGTTGGAGAAGAGCAGTCCACAACTTGGAAGTGTAGAGACCATCATTTGGATCAGCTCACATTCAAAATACCTGCAAAGGTTTAAACAAGAAAAGGACTTTCGGGGGCAAAACAAAACCgctgcaaaaaacaaaaaacttgcaTAGAAAGGAAGGACAACTAAAGTCAAAGGGTTGAGAGGAGAATCTGAGAGGTGAGAAAAGAATTGACAATGTCTTCATTTGAGGCCCAGGGCCTGTCTCCTCCTCGGTGTGGCCCACAGTTCCCCAGCCTCGGCCAGGAGCCCCCTGAACTCAGCATGTACAGCGAATGTTACTACCCTCCCCCTTCACTGCCGAGTCCTCAGCGCACCGCTCCAACGTCCTACGACCTGAGCGACTACACCACCTCATCCCCAAACCCTTACCTCTGGTTCAACGGCTCCGGCATCAACACATCGCCGTACCTGTCTACTTCCGGCCCACCTGGTAACCCCGGTCCTCCCTTTGTTCCTCAGCACTACGGCATGCAGAGGCCTTACCTGGGTCCTGCTGGAGCTGGGGGTCCAGGAGGGGAGTTGAGCTGGTTCTCTCTGCCTTCACAGGAAGACCTGATGAAGCTCGTCAGGCCACCTTACTCCTACTCCGCTCTCATCGCCATGGCTATCCACGGAGCACCAGACAGGAGACTGACATTGAGTCAGATTTACCAGTACGTGGCTGACAACTTTCCTTTCTACAACAAGAGTAAAGCAGGCTGGCAGAATTCCATCAGACACAACCTGTCACTCAATGACTGCTTCAAAAAAGTCCCAAGAGATGAGGATGATCCAGGCAAGGGCAACTACTGGACACTTGACCCAAACTGTGAGAAGATGTTTGACAATGGAAACTTCCGACGCAAAAGGAAGAGAAAGTCTGATTTCCTGGCCGGTGGTGATGGCGGCTCAGGGGCTCCAGAGTCAGGTGACAGTGAGAGGGGCAGCCCCAAACACTCAAGTGCCCTTAACATCTCTCCCACGGCGGACAGGATCCCCTCCCCTTCATCATCCGGTCCAACACCTTGTCTTAGCAGCTTCTTATCCGAGATGTCTGGAGTGTCTGCAGCTAATGAGGTGGGAGCTGACGGGTTAAGCAGGCCACTGCACCTTTCTTTAGATGGGCCTCATAGACCCACGCAACCTGGAAGCTTTGGTAGCTACTCCCCCAACTCAGGTGGCCCAGAGTGGGTGCCACAAGTGGCAGCTGCCCCGGTTCTCTCCTCTTCACCCACCCACTCTTCCCTAGGTTACACTAGCCCCATTCTCAGCCAGTACAATGGGTCCAGTGGGCATTTCTACCCTACACTGAGCTCGACAGGAATCATCTATCATCGTGAGGGCACAGAGGTTTAATAGGATGTTAAGGGGGGAAAGTTTGGTTTAGAAAGACTCTTGACAGGACATTTTACTTGTCTGGTCCCTTATGTTTGAGTAAGGTTTGGTTGTGAAAGACaatacgcacacaaacacacacagtttgcGCTGACTTAGACTGTTAAGATCACTACAGCGTGCGAAAGCAGAGTAAAAAGGCTTTGATTCCCACAGTAAGTGCTGAGTCAGCAGCAATGCACTACGAGTGTCACTCGCTGAAACTACAGTCAGCCTTGCTATCAGATCCTCAGTCAGCTTTTTATTCAAACTAAAGCTAGTCTCTATCAGATCTGACTCATTATTAACAGATCCTGGATCTGATCTGCTGACATCAGGTCATTCCACACTGCTATCTGTGATTCTTTGATGGTATCACCCACACAACGCTCACACAGCACATTTAGAGGAGTAGTTAAATTACACCAGTCGACATAGTGTGTGTAGGTAAAAGGTAGACtttctgtcatgtttttttttgtttttgtagaaCTAAAGCTAAACAATCTGAACTTACAGTCTTGGATAGTAGTAGGCCTAATTGTActtaatataaaatgtaaatatgtcaATGTGTTGTGTAATgttatacatttatattgtcaGTTTGTTGGTGCAACTGTTTGTACAAAATTGATTCATAATGTATGGTACATGCTATATATGCTGTGTTTTTGATATGAATAAAAAGTTTC

Function

symbol description
foxi1 Enables DNA-binding transcription factor activity. Acts upstream of or within several processes, including animal organ development; epidermal cell fate specification; and neuron development. Predicted to be located in nucleus. Is expressed in several structures, including ectoderm; epibranchial ganglion; head; neural crest; and neurogenic field. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 4. Orthologous to human FOXI1 (forkhead box I1).

NR:

description
forkhead box protein I1-ema-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09401 FOXI; forkhead box protein I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812562.1 True 2123 mRNA 0.48 2 445633 447959

Neighbor

gene id symbol gene type direction distance location
LOC120567031 LOC100705418,LOC101464828,LOC102297141 coding downstream 15778 423933 ~ 429855 (-)
sh3tc2 sh3tc2,LOC104962816 coding downstream 109591 311932 ~ 336042 (-)
il12ba NA coding downstream 249192 193931 ~ 196441 (-)
ebf1a ebf1,LOC107086402,LOC101162765,LOC103154059,LOC100707015,LOC106955421,LOC101066888 coding downstream 258283 133516 ~ 187350 (-)
clint1a clint1,LOC101486650 coding downstream 337155 86409 ~ 108478 (-)
lcp2b NA coding upstream 4129 452088 ~ 456219 (-)
LOC120567087 LOC103355704,LOC104949036 coding upstream 10661 458620 ~ 460571 (-)
LOC120567100 LOC104949038,LOC103355705 coding upstream 12964 460923 ~ 463027 (-)
lonrf1 lonrf1,LOC103354679 coding upstream 305563 753522 ~ 778323 (-)
med7 med7 coding upstream 331678 779637 ~ 781792 (-)
G102309 NA non-coding downstream 57388 383449 ~ 388245 (-)
LOC120567446 NA non-coding downstream 214177 230377 ~ 231456 (-)
LOC120567447 NA non-coding downstream 216194 227228 ~ 229439 (-)
G102273 NA non-coding downstream 235191 210129 ~ 210442 (-)
G102240 NA non-coding downstream 378620 65234 ~ 67013 (-)
G102341 NA non-coding upstream 40339 488298 ~ 488647 (-)
G102343 NA non-coding upstream 52509 500468 ~ 500682 (-)
G102345 NA non-coding upstream 110772 558731 ~ 559029 (-)
G102346 NA non-coding upstream 111902 559861 ~ 560236 (-)
G102349 NA non-coding upstream 127033 574992 ~ 575259 (-)
G102276 NA other downstream 214189 220592 ~ 231444 (-)
tmsb2 NA other upstream 18331 466290 ~ 468450 (-)
insb LOC101469513,LOC102789752 other upstream 390987 838946 ~ 841618 (-)
sh2d1aa sh2d1a,LOC102800107 other upstream 1728908 2176867 ~ 2197918 (-)
slc7a2 slc7a2,LOC102301583 other upstream 2277501 2725460 ~ 2740487 (-)
pabir2 LOC104944540,LOC105929195,LOC106528854 other upstream 2443011 2890970 ~ 2898545 (-)

Expression


Co-expression Network