pdgfrl (pdgfrl,LOC100690066,LOC101468828)


Basic Information

Item Value
gene id pdgfrl
gene name pdgfrl,LOC100690066,LOC101468828
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 2714174 ~ 2720027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812580.1
AGGGCTCTGGAGttattttcccttttcttcTCAGTCTGTGAGGATGGAGCTGGAAATCTGAACAGGGCAGCGGGAGCCTGCAGTGTTCCTACTGAGCCCCTCACCAAACCTCCCCGATCTCTCCAGGCCCCGCAAAGCAGACCATCCCGTCAGCACACTATGAAGCTCTGGGTTGTGCTTTGCCTTGCACTGCTCTGGGTGCAGCTCCAAAATGGTACCTGCCAGCAAGCCAAGCGGAAAAAAGATGTAGGAGAGAACCGCATCCGTCCAGGGGGGAAGCGACGACCATTCAAACCGAAAGATGGAGTAGGgaaaggacagtccctgttgaCCCAGGTTTTAGATAAGGGACGCTTCTTGCGCCTGGGCCAGACCACAACTCTGACTCCTGGGAAGAACATGGAGCTGCGCTGCAAAGGCGATTCTATTGGTTGGTCATACCCGACCTACCTGGACACCTTTAACGACTCACGCCTCAGCATCAAGCAGAGTGACAAGTACAGTCAGCTGGTCCTGACGTCGCCCTCTGCTGCTGACACGGGGCCCTACAGCTGCTGGGTGATCGTGTGCGACGGCACAGAGTGCGAGAGGGACCACGATCGCACCTATGTCTCATACATCTATTTCACAGacaaagacaacCTCTTCGTCCCCTCCGCCATCCACTTTGAGATCGTGTACCTGCGCCCAGACCGGCCTGCCGTGGTGCCCTGCCGCGTGACCGACCCGCAGGCCAAGGTGTCCCTGCACAGAGAAGTCCCTCCGGAGGAGATCACAGCCAACAGGACACAGGTGACCTATGACCCCACCAAGGGGTTTGTCCTGAAGAACCCCAGCCCAGGGCATCAGGGGGTCTTCTACTGCAAGGCTGTGACCAAGGGAACGCCTCAGATCTCCACAAAGTACCAGCTGCTCTACGTGGAGGTTCCTAGCGGGGCACCATTTGTGAGCCTAGCAGTGTCTCCGGAGTCTGTGAGAGGAGGAGACAACGTCAACGTGACCTGCAGCGTGCTGGGGGAGCCAGAGGAGGACGTGAGCTTCACCTGGACTTATCCTGGTCAGGGCCGCCGCCCAGTTCACATCCAAACGTCCTGGAGGCTGGTTAACAGAGGAATGGGCCACACCACGCGCTTGTCCCAGAATGTCATGACTGTAGAAGACATGGAGACCATCGACTTTGGAAACTACGTCTGTAACGCCAAGAACCAGTACGGTGAGACAACTGTGACGATCGACATCATCTCCAAATAGCCGCGGCAACAGAACCAGTGTTATGGGTGTATTTCTAGATTGCAGATTGTGATAACATAATAAAGATTTGCTACATCTTTTGTTGAAGA

Function

symbol description
pdgfrl Enables identical protein binding activity. Is expressed in cranium; head mesenchyme; notochord; sclerotome; and somite. Human ortholog(s) of this gene implicated in colorectal cancer and hepatocellular carcinoma. Orthologous to human PDGFRL (platelet derived growth factor receptor like).

NR:

description
platelet-derived growth factor receptor-like protein

GO:

id name namespace
GO:0042802 identical protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812580.1 True 1340 mRNA 0.55 6 2714174 2720027

Neighbor

gene id symbol gene type direction distance location
polr1d polr1d,LOC104920592,LOC104965767,LOC103366847 coding downstream 40971 2664227 ~ 2673203 (-)
LOC120566298 NA coding downstream 123555 2587617 ~ 2590619 (-)
lpar4 lpar4 coding downstream 138885 2567904 ~ 2575289 (-)
p2ry10 NA coding downstream 148994 2558237 ~ 2565180 (-)
gpr174 LOC103366855,LOC104946189,LOC104946188 coding downstream 156584 2547232 ~ 2557590 (-)
zdhhc2 zdhhc2 coding upstream 55378 2775405 ~ 2793673 (-)
micu3b micu3,LOC104941480,LOC104920617 coding upstream 76222 2796249 ~ 2816202 (-)
her11 NA coding upstream 123060 2843087 ~ 2844699 (-)
pfdn6 pfdn6 coding upstream 134803 2854830 ~ 2859046 (-)
ints6l LOC103357573,LOC100710804,LOC102788097,LOC101475885 coding upstream 145812 2865839 ~ 2884095 (-)
G102923 mtus1 non-coding downstream 2735 2709027 ~ 2711439 (-)
G102916 NA non-coding downstream 19560 2694352 ~ 2694614 (-)
G102915 NA non-coding downstream 20619 2690831 ~ 2693555 (-)
G102914 NA non-coding downstream 23611 2688009 ~ 2690563 (-)
G102913 NA non-coding downstream 27094 2686864 ~ 2687080 (-)
G102941 NA non-coding upstream 70499 2790526 ~ 2790824 (-)
G103059 NA non-coding upstream 219119 2939146 ~ 2940797 (-)
G103067 NA non-coding upstream 240344 2960371 ~ 2961386 (-)
G103096 LOC106586057 non-coding upstream 401652 3121679 ~ 3125337 (-)
G103097 NA non-coding upstream 412124 3132151 ~ 3191381 (-)
sh2d1aa sh2d1a,LOC102800107 other downstream 516256 2176867 ~ 2197918 (-)
insb LOC101469513,LOC102789752 other downstream 1872556 838946 ~ 841618 (-)
tmsb2 NA other downstream 2245724 466290 ~ 468450 (-)
G102276 NA other downstream 2482730 220592 ~ 231444 (-)
slc7a2 slc7a2,LOC102301583 other upstream 5433 2725460 ~ 2740487 (-)
pabir2 LOC104944540,LOC105929195,LOC106528854 other upstream 170943 2890970 ~ 2898545 (-)
LOC120567496 NA other upstream 176144 2896171 ~ 2896313 (-)
guf1 guf1,LOC102797887 other upstream 904132 3624159 ~ 3642640 (-)
G103268 NA other upstream 1182964 3902991 ~ 3925309 (-)

Expression


Co-expression Network