pdgfc (pdgfc)


Basic Information

Item Value
gene id pdgfc
gene name pdgfc
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 30139809 ~ 30184692 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812588.1
GTGCCGTCAGTTGGCAGTCTCCAAAAACCCAACCCCGGCCACGCCGCGATATTTTATCTCAGTCTCCACCAAGTTATGACTCAAGACCTCACCAGACAACAGAACCCGTCTCAGTGTTGCGAATGGTTTCTGGGTGCAGACTGTATCAGGTTGCTGcactctctcgctgtctctgtGTTGCTCTAATGCGTAAAGATCTGCGAGGATTTATTCAGACGGAGTCAAGAACGCAACGTGGACGCGTGCCTTAGCTAAAATGCATCTGTGCTTTTCTAATGATATCGTACCATAGATGATATGCCTGCATACGGACGCTTTTACAACTAATTCCAGGATTATAATTACTTAAAGCCAAGTTTTTTATAACTCAGTATCCAACTTTTCTCCGAACCAACAGGTGCGCACTTGCATTACGCAGAAGCGGCACGGTCTGCAAGCTTTGGATGAGGATTTGTCTTGATTTAGGGAGATATACATTTCACTTTTTCCAGAAGGACTGATGATTAAGATTATGTGGATTCTACTCTGCCTGTATCCTCTCCAAATGTGTCCAAAACAGCACTGGTGTCCTGTAGACGACGCATGCATGTTGTGATACAAACCATCCCGTCAACAGCGCTTTGTGATCGCCAACCACCACTCATCCAAATGATCCTTCCATTAATATTCCTTCTTGCATCGCTTCTCCAACAATATGGCTCGGAAGCTGAATCAAGTCATGTCAGCAAATTTCACCCTCCAAGTGTAAAGGAGCAAAACGGAGTGCAAGATTCCCATCAGGAGAAGATCATAACAGTGTCTGGAGAGGGAATGGTCCACAGCCCAGACTTCCCACACACTTATCCCAGGAATACCGCGTTGGTCTGGAGACTAGTGGCGACCAATAACCTGAGGATCCAGCTCACTTTTGATGACAGGTTTGGTCTAGAGGACCCCGAAGATGGTATATGCAAATACGACTTTGTGGAGATAGAGGATCCGACTGAGAAGACCATCCTGGGTCGCTGGTGTGGGTCACAGTCGGCACCAGCTAGTCACACGTCCAAAGGCAGTCAGATCAGGATCCGCTTCATCTCTGATGAGTACTTCCCCACTGAGCCGGGATTCTGCGTCCGCTACTCCCTTCTGCCTGTGAGTGTATCAGAACCCGAAGTCCCTGTGGTTCTCCCTGCATCCCAGCAGGGTATTGAAGAGTTGTCAGAGGCTGTGGCAGGGCTGGGCACCATGGAGGAGGTCATGCAGTACCTGGAGCCGGAGCGATGGCAGCTGGATATGGAGGAGTTGTACAAACCTACATGGCATGTGCTGGGGAAAACCTTCATCCGTAATAAGAAGGCCAGAGgAGGAGTTGATCTCAATCTGTTGAGGGAGGACGTTCAACTGTACAGCTGCACTCCACGCAACTTCTCTGTATCCTTGCGTGAGGAGCTGAAGAGGACAGATGCCATTTTCTGGCCAAGCTGCCTCCTGGTGAAGCGCTGTGGTGGAAACTGTGCCTGCTGCTCTCACCGCTGCTATGACTGCCAATGTGTTCCCACCAGGGTCACCAAGAAATACCATGAGGTTCTACTGTTGAAACACCAAAGTGGTGTCAGAGGCCTGCAGAAGTCTATGACTGATGTGCCCTTGGAGCACCATGAggagtgtgcctgtgtgtgtaaagaTGACGGGGACTGACCTCAGACATGTGTAATAGCTGCCACTGGAGTCACACAGGACATTAGAAATGAACCTCTGCCGCTGTTGCAACATTCTGTATCTCATCCACTTCCACTGGGAGCTAACAAGATTGTCCCTTTATTCTGTTGTCCTTTCGCTAATTGGATGAAGCAGAACAGAGTGGAATCTAATAACTCTTCTGAATGGATTCGAACTGCTGTGGAATACCAATAGTTTGCTCTGAGTGCATTTTAGAGAGACAAAAATTCACTGGAGCAGATCTGAACTATTGTTGCTCTGAAGACTATTTTTTTCAGCTCAGATAAGAACATTGAGGCGTTTTTGCCTCTTCTTGAGCTCTCTTTTATAGTTCAGCCAGCGTGGGCTGAGAATGTCATGGAAAATGGGAGCTTCTTTGTTCAAGTACTTTTTTATGTCAATAAGTAAGCTGGCTCCAGCTGCATTATTCCCTCTGCTCCTCTGTTATTACCTTCAAGGCAAAGAAAGGTGCTTTCTCATGAGCAGTTTTCCTTTGCTCCACTTTTGTTTCACCACATATTTAATCTGCAGCCACGGTATCGCTGAAATGCCTTGCTAATAAGACTGTATTAtgtgtaaatatttaatttacatttcCTTTCTGTACTACCGTACCTTTTCTACCAAAGATTCTCAAGGAGAAGATAAAAGTTGCACATGTAGAATCAATTGGGTGTTGTTCATTACAACTCTTAATTCAACCCATCTCAGCAATCTCAAATCTGCTAGCTTCAGGAAGGCCTAGCGTCAAGCCATTCTTGCTGTATTTGAGAATATTCATATttgatatttatttgtttaaagaaagGGAAATTTacatccaaaatgtattgtttgcTACATGTGTCACTGTACAGTAGTATTGGCCTCCAGTTTTCTTTCTAAGTCATTTTACATTGCCATTGTGTCAtgaatgtttttcattttctgtatgCCAAAGTTATTTATCTCTTTTGCAATAACTGTTTGTGTATTTCTTTGTACTGAACATCAAAAATAAATTCTTCAATTTCTAA
>XM_039812589.1
TGCCGTCAGTTGGCAGTCTCCAAAAACCCAACCCCGGCCACGCCGCGATATTTTATCTCAGTCTCCACCAAGTTATGACTCAAGACCTCACCAGACAACAGAACCCGTCTCAGTGTTGCGAATGGTTTCTGGGTGCAGACTGTATCAGGTTGCTGcactctctcgctgtctctgtGTTGCTCTAATGCGTAAAGATCTGCGAGGATTTATTCAGACGGAGTCAAGAACGCAACGTGGACGCGTGCCTTAGCTAAAATGCATCTGTGCTTTTCTAATGATATCGTACCATAGATGATATGCCTGCATACGGACGCTTTTACAACTAATTCCAGGATTATAATTACTTAAAGCCAAGTTTTTTATAACTCAGTATCCAACTTTTCTCCGAACCAACAGGTGCGCACTTGCATTACGCAGAAGCGGCACGGTCTGCAAGCTTTGGATGAGGATTTGTCTTGATTTAGGGAGATATACATTTCACTTTTTCCAGAAGGACTGATGATTAAGATTATGTGGATTCTACTCTGCCTGTATCCTCTCCAAATGTGTCCAAAACAGCACTGGTGTCCTGTAGACGACGCATGCATGTTGTGATACAAACCATCCCGTCAACAGCGCTTTGTGATCGCCAACCACCACTCATCCAAATGATCCTTCCATTAATATTCCTTCTTGCATCGCTTCTCCAACAATATGGCTCGGAAGCTGAATCAAGTCATGTCAGCAAATTTCACCCTCCAAGTGTAAAGGAGCAAAACGGAGTGCAAGATTCCCATCAGGAGAAGATCATAACAGTGTCTGGAGAGGGAATGGTCCACAGCCCAGACTTCCCACACACTTATCCCAGGAATACCGCGTTGGTCTGGAGACTAGTGGCGACCAATAACCTGAGGATCCAGCTCACTTTTGATGACAGGTTTGGTCTAGAGGACCCCGAAGATGGTATATGCAAATACGACTTTGTGGAGATAGAGGATCCGACTGAGAAGACCATCCTGGGTCGCTGGTGTGGGTCACAGTCGGCACCAGCTAGTCACACGTCCAAAGGCAGTCAGATCAGGATCCGCTTCATCTCTGATGAGTACTTCCCCACTGAGCCGGGATTCTGCGTCCGCTACTCCCTTCTGCCTGTGAGTGTATCAGAACCCGAAGTCCCTGTGGTTCTCCCTGCATCCCAGCAGGGTATTGAAGAGTTGTCAGAGGCTGTGGCAGGGCTGGGCACCATGGAGGAGGTCATGCAGTACCTGGAGCCGGAGCGATGGCAGCTGGATATGGAGGAGTTGTACAAACCTACATGGCATGTGCTGGGGAAAACCTTCATCCGTAATAAGAAGGCCAGAGGAGTTGATCTCAATCTGTTGAGGGAGGACGTTCAACTGTACAGCTGCACTCCACGCAACTTCTCTGTATCCTTGCGTGAGGAGCTGAAGAGGACAGATGCCATTTTCTGGCCAAGCTGCCTCCTGGTGAAGCGCTGTGGTGGAAACTGTGCCTGCTGCTCTCACCGCTGCTATGACTGCCAATGTGTTCCCACCAGGGTCACCAAGAAATACCATGAGGTTCTACTGTTGAAACACCAAAGTGGTGTCAGAGGCCTGCAGAAGTCTATGACTGATGTGCCCTTGGAGCACCATGAggagtgtgcctgtgtgtgtaaagaTGACGGGGACTGACCTCAGACATGTGTAATAGCTGCCACTGGAGTCACACAGGACATTAGAAATGAACCTCTGCCGCTGTTGCAACATTCTGTATCTCATCCACTTCCACTGGGAGCTAACAAGATTGTCCCTTTATTCTGTTGTCCTTTCGCTAATTGGATGAAGCAGAACAGAGTGGAATCTAATAACTCTTCTGAATGGATTCGAACTGCTGTGGAATACCAATAGTTTGCTCTGAGTGCATTTTAGAGAGACAAAAATTCACTGGAGCAGATCTGAACTATTGTTGCTCTGAAGACTATTTTTTTCAGCTCAGATAAGAACATTGAGGCGTTTTTGCCTCTTCTTGAGCTCTCTTTTATAGTTCAGCCAGCGTGGGCTGAGAATGTCATGGAAAATGGGAGCTTCTTTGTTCAAGTACTTTTTTATGTCAATAAGTAAGCTGGCTCCAGCTGCATTATTCCCTCTGCTCCTCTGTTATTACCTTCAAGGCAAAGAAAGGTGCTTTCTCATGAGCAGTTTTCCTTTGCTCCACTTTTGTTTCACCACATATTTAATCTGCAGCCACGGTATCGCTGAAATGCCTTGCTAATAAGACTGTATTAtgtgtaaatatttaatttacatttcCTTTCTGTACTACCGTACCTTTTCTACCAAAGATTCTCAAGGAGAAGATAAAAGTTGCACATGTAGAATCAATTGGGTGTTGTTCATTACAACTCTTAATTCAACCCATCTCAGCAATCTCAAATCTGCTAGCTTCAGGAAGGCCTAGCGTCAAGCCATTCTTGCTGTATTTGAGAATATTCATATttgatatttatttgtttaaagaaagGGAAATTTacatccaaaatgtattgtttgcTACATGTGTCACTGTACAGTAGTATTGGCCTCCAGTTTTCTTTCTAAGTCATTTTACATTGCCATTGTGTCAtgaatgtttttcattttctgtatgCCAAAGTTATTTATCTCTTTTGCAATAACTGTTTGTGTATTTCTTTGTACTGAACATCAAAAATAAATTCTTCAATTTCTAA
>XM_039812590.1
AAAGTAGTCTAGTAGGAAGTACTGGTCATGCTGCTATTACGAGATGGAGTGCAAGATTCCCATCAGGAGAAGATCATAACAGTGTCTGGAGAGGGAATGGTCCACAGCCCAGACTTCCCACACACTTATCCCAGGAATACCGCGTTGGTCTGGAGACTAGTGGCGACCAATAACCTGAGGATCCAGCTCACTTTTGATGACAGGTTTGGTCTAGAGGACCCCGAAGATGGTATATGCAAATACGACTTTGTGGAGATAGAGGATCCGACTGAGAAGACCATCCTGGGTCGCTGGTGTGGGTCACAGTCGGCACCAGCTAGTCACACGTCCAAAGGCAGTCAGATCAGGATCCGCTTCATCTCTGATGAGTACTTCCCCACTGAGCCGGGATTCTGCGTCCGCTACTCCCTTCTGCCTGTGAGTGTATCAGAACCCGAAGTCCCTGTGGTTCTCCCTGCATCCCAGCAGGGTATTGAAGAGTTGTCAGAGGCTGTGGCAGGGCTGGGCACCATGGAGGAGGTCATGCAGTACCTGGAGCCGGAGCGATGGCAGCTGGATATGGAGGAGTTGTACAAACCTACATGGCATGTGCTGGGGAAAACCTTCATCCGTAATAAGAAGGCCAGAGgAGGAGTTGATCTCAATCTGTTGAGGGAGGACGTTCAACTGTACAGCTGCACTCCACGCAACTTCTCTGTATCCTTGCGTGAGGAGCTGAAGAGGACAGATGCCATTTTCTGGCCAAGCTGCCTCCTGGTGAAGCGCTGTGGTGGAAACTGTGCCTGCTGCTCTCACCGCTGCTATGACTGCCAATGTGTTCCCACCAGGGTCACCAAGAAATACCATGAGGTTCTACTGTTGAAACACCAAAGTGGTGTCAGAGGCCTGCAGAAGTCTATGACTGATGTGCCCTTGGAGCACCATGAggagtgtgcctgtgtgtgtaaagaTGACGGGGACTGACCTCAGACATGTGTAATAGCTGCCACTGGAGTCACACAGGACATTAGAAATGAACCTCTGCCGCTGTTGCAACATTCTGTATCTCATCCACTTCCACTGGGAGCTAACAAGATTGTCCCTTTATTCTGTTGTCCTTTCGCTAATTGGATGAAGCAGAACAGAGTGGAATCTAATAACTCTTCTGAATGGATTCGAACTGCTGTGGAATACCAATAGTTTGCTCTGAGTGCATTTTAGAGAGACAAAAATTCACTGGAGCAGATCTGAACTATTGTTGCTCTGAAGACTATTTTTTTCAGCTCAGATAAGAACATTGAGGCGTTTTTGCCTCTTCTTGAGCTCTCTTTTATAGTTCAGCCAGCGTGGGCTGAGAATGTCATGGAAAATGGGAGCTTCTTTGTTCAAGTACTTTTTTATGTCAATAAGTAAGCTGGCTCCAGCTGCATTATTCCCTCTGCTCCTCTGTTATTACCTTCAAGGCAAAGAAAGGTGCTTTCTCATGAGCAGTTTTCCTTTGCTCCACTTTTGTTTCACCACATATTTAATCTGCAGCCACGGTATCGCTGAAATGCCTTGCTAATAAGACTGTATTAtgtgtaaatatttaatttacatttcCTTTCTGTACTACCGTACCTTTTCTACCAAAGATTCTCAAGGAGAAGATAAAAGTTGCACATGTAGAATCAATTGGGTGTTGTTCATTACAACTCTTAATTCAACCCATCTCAGCAATCTCAAATCTGCTAGCTTCAGGAAGGCCTAGCGTCAAGCCATTCTTGCTGTATTTGAGAATATTCATATttgatatttatttgtttaaagaaagGGAAATTTacatccaaaatgtattgtttgcTACATGTGTCACTGTACAGTAGTATTGGCCTCCAGTTTTCTTTCTAAGTCATTTTACATTGCCATTGTGTCAtgaatgtttttcattttctgtatgCCAAAGTTATTTATCTCTTTTGCAATAACTGTTTGTGTATTTCTTTGTACTGAACATCAAAAATAAATTCTTCAATTTCTAA

Function

symbol description
pdgfc Predicted to enable growth factor activity and platelet-derived growth factor receptor binding activity. Predicted to act upstream of or within several processes, including embryonic organ development; platelet-derived growth factor receptor signaling pathway; and positive regulation of cell division. Predicted to be located in extracellular region and membrane. Is expressed in mouth and otic vesicle. Orthologous to human PDGFC (platelet derived growth factor C).

NR:

description
platelet-derived growth factor C-like

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0048008 platelet-derived growth factor receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005161 platelet-derived growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05450 PDGFC_D; platelet derived growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812588.1 True 2714 mRNA 0.45 6 30139809 30184692
XM_039812589.1 False 2710 mRNA 0.45 6 30139809 30184691
XM_039812590.1 False 2000 mRNA 0.45 6 30139809 30171193

Neighbor

gene id symbol gene type direction distance location
neil3 neil3 coding downstream 36890 30090948 ~ 30102919 (-)
si:dkey-237h12.3 tenm3 coding downstream 111671 29881190 ~ 30028138 (-)
tdo2a tdo2 coding downstream 265161 29867532 ~ 29874648 (-)
asb5a asb5,LOC103355623,LOC101464329,LOC100697054,LOC107095814 coding downstream 280697 29852829 ~ 29859112 (-)
spata4 NA coding downstream 287125 29847910 ~ 29852684 (-)
ppid ppid coding upstream 353135 30537827 ~ 30548407 (-)
LOC120566929 clg2h4orf45,LOC104948239,LOC102200624,LOC101472142 coding upstream 368484 30553176 ~ 30555189 (-)
fstl5 NA coding upstream 614545 30799237 ~ 30974285 (-)
anxa5a anxa5 coding upstream 1086534 31271226 ~ 31300495 (-)
ccna2 ccna2,LOC101477005 coding upstream 1124853 31309545 ~ 31313167 (-)
G108600 NA non-coding downstream 363388 29723824 ~ 29776421 (-)
LOC120567321 NA non-coding downstream 389273 29553435 ~ 29750536 (-)
G108560 NA non-coding downstream 865855 29273594 ~ 29273954 (-)
LOC120567081 NA non-coding downstream 1210904 28833175 ~ 28928905 (-)
G108524 LOC104954097 non-coding downstream 1458710 28678279 ~ 28681099 (-)
G108702 NA non-coding upstream 91172 30275864 ~ 30282627 (-)
G108718 NA non-coding upstream 202829 30387521 ~ 30387854 (-)
G108722 NA non-coding upstream 217968 30402660 ~ 30403036 (-)
G108772 rapgef2 non-coding upstream 468178 30652870 ~ 30654526 (-)
G108785 NA non-coding upstream 548867 30733559 ~ 30733770 (-)
cxcl14 cxcl14 other downstream 1331815 28797298 ~ 28807994 (-)
fam13b fam13b,LOC102777128 other downstream 1344301 28714863 ~ 28795508 (-)
LOC120566547 NA other downstream 2101109 28024570 ~ 28038700 (-)
G108433 neto1,LOC101071133 other downstream 2116580 28021737 ~ 28023229 (-)
LOC120566991 NA other downstream 2184115 27952256 ~ 27955694 (-)
gask1b fam198b,LOC102776406 other upstream 162286 30346978 ~ 30356856 (-)
G108777 rapgef2 other upstream 476220 30660912 ~ 30661623 (-)
G108781 rapgef2 other upstream 484839 30669531 ~ 30670849 (-)
LOC120566409 limch1 other upstream 1200398 31385090 ~ 31423481 (-)
LOC120566557 limch1 other upstream 1235187 31419879 ~ 31485976 (-)

Expression


Co-expression Network