si:zfos-80g12.1 (LOC103374023,LOC107378313,LOC106515654,LOC103390849)


Basic Information

Item Value
gene id si:zfos-80g12.1
gene name LOC103374023,LOC107378313,LOC106515654,LOC103390849
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23430886 ~ 23443278 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812630.1
TCCGGGAAGGTTTACTCTCCTCTCTCAGACAGTCCAGTCTTCAGCTACAGACCGACCGGCTGGCTGCGTATAGCGGCAGGATTTTCTTGCCTTTGTTAGCTAAGTTAGCTTGGAAAGCACCAAGAAAAGACAGAGCCGCATCCATGCAGTAGCACCCTGTTTTTGGAAAATGATCATCTGTACGAATAAAATGGAGTACCCCCTAAGAACCCAGTGCCAGCGAGTCCACAAACAGgtCATGGTGAACGGAGAGAAGGAGCGAGTGTCGCTGCTGTTCATGAAGGCTCTGGTCAGCAGGGGGAGCGTGGATGCCGTGTCCCAGCAGATGGCCTCTCACCCTCAGTACTTGGAGAGCTTCCTGCGCACACAGCACTACATCCTGCACATGGACGGCCCCCTGCCGCTGCCGTACCGCCATTACATCGCCATCATGGCTGCGGCACGACATCACTGCAACTATCTGGTGTACCTGCACTCAGCCCAGTTTCTGAGGGTGGGCGGGGACCCTCTGTGGTTGCAGGGTTTGGAGGCAGCGCCCCCCCGCCTTCGTCTCCTTGACCACATCAACAAAGTTCTGGCCCACCAACCCTGGCTCACTGCCTGCTCACACATCCAGACGCTGCTGAAGTCGGGCGAGCAGTGCTGGTCGCTGGCTGAACTGGTGCAGGCTGTCGTGATCCTGGCCCACTGCCACTCCCTCTGCAGCTTTGTGTTTGGATGTGACACAGACTCAGACTTTGTCCCTCTGTCCAAATCTCCTAACGGTACCCCGCCAACCTTTTGCCCCTTTGATGCTGCAAATGGCAACACCAACGTGCCTCAGTTGCTCGCCACTCCGTCCGAACACATAACACGAAGACGGTCTCTGGACTCCAGTTGTGACATGGTGTGTCTAAAGGAGAGGATCCAGAAGTCCCAGGAGGAGcgtgagaagagagaagagcgTCTGCTGCAGACACAAACACTCCAGCAAACAGAtatggaagaagaggaggagatgatATTCTTCACAGACCCAACGCGTTTTATCACAGACCCTGACTTATGCTATCAGGAGTTTGCTCGTAGGGAGGAGGACCACTTTCAAGTATTTAGAGTTCAGGACTATTCATGGGAGGACCACGGCTTCTCCTTAGTCAACCGGTTGTATTCAGACATCGGGCACCTCTTGGACGACCGATTCAGAAGTGTGACTACCCTTCCCTCGATGCACAGCCCCGACCTGAAGAGGGCGATCTGGAATTACATCCATTGTGTGTTAGGAATACGGTATGATGACTATGATTACGGAGAAGTGAATCAGTTGCTGGCGCAGGATTTAAAGCTGTACATCAAGGCTGTGGCCTGTTTCCCAGATGCCACTAAAACTCCAGTGTGTCCGCTGAGTTTGGCTCCACTTAAAACTTCAGAACGGATACACGTTAATTTACTAATCATGGAGGCCCGGCTTCAGGCTGAGCTGCTATACGCTCTGAGAGCCATCACTCAGTACATGATCGCCTAAGTGCTCGGAGAGGCACAAAGCTAAAGCTCTCCGCCGGTACAGAGAGACCCAGAGATGCgaggataaaaacaaaaaaatctcaaCTGCAGACGGTGAAGTGGAATGAGAGCGGCATTTTTAAGGACACAGAGCGCCATCGCTTCGTAGCTGTGCCTCATgaatgtgcttttctttttctcagatttaatgtatttaaacCATAGTGTTCCGCACACCCCCTTCTCCTGCAAAATTCTCCTGTTGTGATGTCCTCTCACCAAACATCTCGACTCTGAAAAGCTATgtgcaattattattattagagttgttttaattttgacatattgttttgtGTTCCAGCTCAGTCTGAGAAACTGTTTGGTTGTAGCAGTGTGTTACAGTGGCCAATACTCTCCCTAGTTTGATCAGTCTCCTTTTTCTATTAACTATGCTTTCCCCCAAAAAGTATCTTTTTGTACAAGTTGAATGTTAATGGGAGACCAGGGCCTCTGTTATTTTTTTGGACAATCCTTGTCAGTGTTGGAGAAGGACATTAAGTGGACTGTGACATTTCGTATTAATGCTGGTCAAGAACAAACACAACAGTGACACTGCTCAAAGTTATCGCATCACTATAGTTTCTTTTAATAAgcacttttttaaactttatatatttataatacaaGGTAGCTCATTAGTAGACACACAGTGTGTGGATCTGACGCCTTCTCCACTGTACGACGTGTAACAAAGATTTTCGTCAAACTTTCAGACTTTGGTTTTGTTTTCAACCGCAGATTTCTGAGTGAAATAGCTTGATCCAAGATATTTCGGTTAATTATTGCTCCTCTTGTTacgttcagttcagttcagtgcTGACACATcgttttaaaaacacacaatttaCACTTGATTAGAAAATTTGTAACTAAACTTAGGAAGTCAGTGAGCTGTTTCCTACACTGAAAGATTAAGCTGAGCCATTCGCTAAATGTTTGTAGTGGGTTTTCGTTTTTGGAAAGTGATCAAATCAGAGACTGAATTTCAGACCAAGTCATTAAAAAACAGCAACGTGATGAATTGGATAGATGAAAATTGGCCAATAGATCTGCACTGGTCATGAGTAGAGTTTGAGTTCAGATTTTGGCtcaaagctttgtgtttaagcTTTTTTGTGAGCTGTTATCAAAGCTGATTATCAAGTCAAAATCCACGGTACAATTTGCAAAACAGAACAATGTGCAAACTAGTTGTTAAAACACTtgtatctttttttctgtcttttatttttatagtttttttgtaAACTATAGagtacttttttgtttttgtttctgggTGTGACTGTAGGACCTGCTTATCGTGCTGCAGCCTGGGTAGACGTAGAGGTGTGATGGACTGTTTAGAGTTAGTAACTGCAGGATGTAGAAAAGAAACAAGTGCATATCGAGCATATAAAGCAAAAGTGCTGTTAACACAGGTGCCTTTAGGCTAAAACTGGAGTGCTGCTGAAGTGGAGGGATGTGACTACTGGAGGCTGAATGTGGGCTTTGGTTGCAGCTGGGGAAACACCCCCAACTGACAAGTTTAAAACTTGTGGCTTTTCCTACATGaatgggaatgtttttttcttggtGTTGGTCAGCAGCATTTCTGATAAAAATGACGGCCGTGTTTCCTATCAGACACCTTCTAAGAGCCCCAGCAACTCAGCAAAGAGCCTTTGACACGGATGGATGTTAAAAAAGTTCAACTTGAGCAGATAAAAAAAGGAcaattatcaaaaaaaaaataaataaataaataaaaatgtgaaaaaagagAACAAgtgaaaaggcaaaaaaaatgttttttgaaaatgtgaagAAATGTTTTCTATAAAGACGCTCTATGACAATAA

Function

NR:

description
PREDICTED: sestrin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812630.1 True 3383 mRNA 0.45 9 23430886 23443278

Neighbor

gene id symbol gene type direction distance location
zgc:92907 alg13 coding upstream 7185 23421174 ~ 23423701 (+)
rap2c rap2c,LOC105911927,LOC106515678,LOC100691801,LOC107560880 coding upstream 15585 23411009 ~ 23415301 (+)
mbnl3 LOC100691532,LOC101470482,LOC102193800,LOC102309145,LOC102795898 coding upstream 20572 23378210 ~ 23410314 (+)
hs6st2 LOC104925546,LOC104960671,LOC103374067 coding upstream 53740 23374217 ~ 23377146 (+)
nudt22 nudt22 coding upstream 73321 23353258 ~ 23357565 (+)
fosl1a fosl1 coding downstream 88825 23532103 ~ 23535698 (+)
fibpa fibp coding downstream 98698 23541976 ~ 23547733 (+)
efemp2a efemp2 coding downstream 105843 23549121 ~ 23559843 (+)
npas4a npas4,LOC102790988 coding downstream 136299 23579577 ~ 23585572 (+)
tmem265 LOC103373868,LOC104958454 coding downstream 154819 23598097 ~ 23610494 (+)
G107377 NA non-coding upstream 13343 23417224 ~ 23417543 (+)
G107353 stx5 non-coding upstream 110237 23319392 ~ 23320649 (+)
G107340 NA non-coding upstream 143208 23285363 ~ 23287678 (+)
G107341 NA non-coding upstream 145672 23282979 ~ 23285214 (+)
G107334 NA non-coding upstream 159665 23270799 ~ 23271221 (+)
G107410 ccdc85b,LOC102791751 non-coding downstream 92583 23535861 ~ 23539382 (+)
G107507 slc25a5,LOC106926499,LOC103140121,LOC101464643,LOC102200398,LOC104931197 non-coding downstream 200014 23643292 ~ 23644515 (+)
G107531 NA non-coding downstream 243316 23686594 ~ 23688072 (+)
G107565 dlg3,LOC102786504 non-coding downstream 355379 23798657 ~ 23800227 (+)
G107570 NA non-coding downstream 441315 23884593 ~ 23985057 (+)
G107333 NA other upstream 160670 23268791 ~ 23270216 (+)
tgfb5 LOC104925539,LOC103374198,LOC102800105,LOC105920438,LOC102314494,LOC101466107,LOC100690458 other upstream 168625 23252755 ~ 23262261 (+)
flrt1b LOC103374305,LOC102200053 other upstream 298201 23100025 ~ 23132685 (+)
rom1b rom1,LOC102779683 other upstream 433848 22950595 ~ 22997038 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other downstream 11262 23454540 ~ 23466205 (+)
LOC120566905 LOC104953971 other downstream 45007 23488285 ~ 23492538 (+)
G107386 cfl1 other downstream 49566 23492844 ~ 23494989 (+)
G107487 mrpl11,LOC102790704 other downstream 147050 23590328 ~ 23626289 (+)
LOC120566416 NA other downstream 412247 23855525 ~ 23865274 (+)

Expression


Co-expression Network