LOC120566290 (LOC104961544)


Basic Information

Item Value
gene id LOC120566290
gene name LOC104961544
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20701542 ~ 20703679 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812634.1
cATTCGCTTTGTCATACACTAAACCCAGGGTGAAGATGGGAAGCTGTTCACGATCCggtgtgctgctgtgttttgtCCTTCATTAATACCTCCTTTCTTCTCATTTTATTCATACTGGATCGATATCCCGTAAGGGCAGACAGTCGGTAGCATCTATCCGACACGTATCGACCCTTTCCTGGATAAAAGAAAAAGCGAAGGTTTGCAAAAACGGGGATCCGGCGTGCCCTTCTTCTGCGCCATGCACGCTCAAGCAAAGGAGATCCTGTTGTGCTGCGCACCGAGACGCGCGAGAGGACATGTATGCGCACCACTGATCCCCGTTGAACTTCACCTCCTCTGACAGACCCTAGAGTCATTTGGATATCGCTACTGTAGCCTATCGCAGTCTGTGCTTAACCTCACGCCTGGCAAGGTGATTTGGATTTAAACGCCACCAAGTAGAACAGGTAATGTGCTCTTTCACTGGGACCCTGATCTGCGCGTACACGTGGATTTGATTAGTTCTGTTTCATGTGAGGGGAGACGCTTCCTTAATAGTCCCACTCAGCGACATATGGTGTTCTGTGGGCGCAGATTTCAAGCTATCGACCCGCCGCTTCTCCAAAGCGTGTCCACGGCGGACCTGGAGCGGACAGAGCCGGGGACGCTGAGGAATGCGGAGCCGGGATTTTGTCTTTTCCAGCTCACCTGCGGAAGTCTTCGCAGCCCAAACCAAAGAATCTCCATTCTACTTTATCGGTGCATCAGAGATAGGACACCCAGACTGAACAGACACGGGgtcagtaggctacataaccTTCTCAGTGTCTTTTCATCCTCCAGCCGACCGACGCAGCCGGTGAGCACGCGGGGCGCCATGCTAAGGCAGATCCTCCTCAACTCCACCAACACCCCAGACTTAGACCTGGTGCTCATGGCCCAGTCCTCCACGCACGCGCCCTCCTCCCTGAACGCCTCACACGGCGGTTCGGTGAGCGTGGCCGCTCTTCTGAGACCCATCGCGGGGCGAGGGGCAGTTGGGCTCCGGGAGGGCGAGCTCCACAAACCGGACCTGATCACCTACATAGTCATGTGCCTACTGCTCTTCCTGTTGGTGTTGCTTATTGTGTTCTTCATCAACTGCCAGCTCCGGAACTCTTTCTTCGCCTCCATGCCATATGACAGGTCGCTGAGAGAGGCCCGGACCTCCTACAAGTAGCCTAGGCTAGACCCCCCGGGACTAACCTCTGTGACCCTGGGTCTTTAGTGAGACTCCTGCTTGTAGGTTAACGGGTCACCCTTTAACTGCTGCTGCACGTATACTCAACTCACGAAGTTGTTGCCTTTACCACTTGTCTTTGGCACATTGGAAGGCCTAAATAACCTGGAACCCCAACGACACCTAACATGATTAATCAGGGCCTCGATTTGAGAAGATGAATTGGGTATATGGGCCCACTGTGGAAAAATAACAGTAGGCTATAACTCCTGATTAAATTAGTGACTCCTGTTTTTGGGGTATACAATGTGAAACAATCCATCATCTCCTGCAACCCCCTCGTGGTCAGCGCACTGCACTTTGGAAACTAATTATGTATTCCTTTCACAGTATATATACTCCCAAGCTTGTATTTATTCATCTAGCTGCTTACAAATTTGACCTGGCGCCTGCTATTTGGGGCCAAATTTACAGTATTCCACACTGGCCCTGACactttaatgtgtttttgttcatgGAACGTGACTTATGGTAACATAAATAGTATAGAGTTGATTGTATATAACATATTTTGTATGACTGTAACTTAACTGTCCTGTCTGGTGAAATGAAGTAATCAACACATAATTTTCACCCTTTTTTCCCACTGTAAAATGCAGATTCAATTACAAACTGTAGGCCTATGTCGTCACATAAAGATATTCAAATGTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104961544 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812634.1 True 1912 mRNA 0.49 2 20701542 20703679

Neighbor

gene id symbol gene type direction distance location
LOC120566601 diaph1 coding downstream 2339 20585982 ~ 20699203 (-)
LOC120566486 NA coding downstream 949835 19741886 ~ 19751707 (-)
LOC120566528 NA coding downstream 974251 19723502 ~ 19727291 (-)
spock1 spock1,LOC102785053 coding downstream 1002773 19598361 ~ 19698769 (-)
dele1 kiaa0141 coding downstream 1123696 19569535 ~ 19577846 (-)
trpc7b trpc7,LOC101475915,LOC100711831,LOC102778756 coding upstream 12148 20715827 ~ 20770031 (-)
dock2 NA coding upstream 110799 20814478 ~ 20834647 (-)
LOC120567463 dock2 coding upstream 169178 20872857 ~ 20924459 (-)
LOC120567468 kcnip1,LOC103390931,LOC103036759 coding upstream 259710 20963389 ~ 21003969 (-)
LOC120566893 clg04h4orf50 coding upstream 306036 21009715 ~ 21024973 (-)
LOC120567131 NA non-coding downstream 140198 20559937 ~ 20561344 (-)
G106556 NA non-coding downstream 155573 20506969 ~ 20545969 (-)
G106548 LOC103374833 non-coding downstream 205964 20488887 ~ 20495578 (-)
G106535 NA non-coding downstream 264739 20435969 ~ 20436803 (-)
G106520 LOC102792811 non-coding downstream 301929 20399337 ~ 20399613 (-)
G106631 LOC103354784,LOC104948895,LOC108243071,LOC103147451 non-coding upstream 237852 20941531 ~ 20943593 (-)
G106632 NA non-coding upstream 242359 20946038 ~ 20947573 (-)
LOC120567470 NA non-coding upstream 251658 20955337 ~ 20960892 (-)
G106645 NA non-coding upstream 296280 20999959 ~ 21000211 (-)
LOC120566356 NA non-coding upstream 366462 21070141 ~ 21073913 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 467618 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 719909 19971833 ~ 19981633 (-)
tlr1 LOC104951710,LOC102197886 other downstream 1218917 19477930 ~ 19482625 (-)
tomm5 NA other downstream 1264615 19435839 ~ 19436927 (-)
LOC120566717 LOC102215832 other downstream 1451106 19215989 ~ 19250436 (-)
LOC120566885 ppp2r2c other upstream 372078 21075757 ~ 21110067 (-)
G106728 mif other upstream 424159 21127838 ~ 21130970 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other upstream 475173 21178852 ~ 21187653 (-)
G106988 NA other upstream 1086574 21790253 ~ 21790725 (-)
G107015 NA other upstream 1416006 22119685 ~ 22120067 (-)

Expression


Co-expression Network