tmtops3a (LOC103376588,LOC104957983,LOC101471053,LOC102197526,LOC102311316)


Basic Information

Item Value
gene id tmtops3a
gene name LOC103376588,LOC104957983,LOC101471053,LOC102197526,LOC102311316
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24459097 ~ 24465511 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812723.1
CTGTGATGAATCCGCCCTCGCAGCGTGTAGAGCTGCTGTAGTGGGGCTGTGCAGGACTTTGTGCTTCTCTCCAGCCCTCTGCTCTCCTCTCACTGCTATGGTCGTCCACATAGGCGGTTGCAATTTCAGCACCGCAGACAGCTCTCTCTCCAGCTCCAACCTCAGCACCGTCGCCGGCGGGCTGAGCCGGACCGGCCACACGGTGGTGGCAGTATGCCTCGGCTTCATTTTAGTTGCGGGAATCTTTAACAACTTCCTCGCTCTTCTCATCTTCGCAAAGTTTCGCTCGCTCTGGACGCCCATCAATGTCATCCTGTTGAACATCAGTCTGAGCGACGTCCTCGTGTGCGTTTTCGGCACACCATTCAGTTTCGCTGCGAGTCTGCACGGGAGATGGCTCATTGGAGAGTACGGCTGTAAGTGGTACGGGTTCGCCAATTCCCTCTTTGGGATTGTGTCCCTGGTTTCGTTGTCTGTTCTCTCCTATGAGCGCTACGCCGCCGTGCTGTGTTCCTCCCTGGTCGACATGTCAAACTTCAGGAAGGCCTGGCTCTGTGTCGGAGGCTCCTGGCTCTACTCTCTCTTCTGGACCTTGCCGCCCATCCTGGGTTGGGGCAGCTATGGGCCCGAGGGACCCGGTACCACATGCTCCGTCCAGTGGCACCTCCGTTCACCCACCAGCGTCTCCTACGTGTTGTGTCTCTTCATCTTCTGTCTGCTGCTGCCTCTTCTACTCATGGTCTACTCATACGGCCGGATCCTGATGGCAATCAGGAGGGTAGGTAAAATCAATTTGCTGGCAGCTCAGCGCAGAGAGCAGCACATTTTGGCGATGGTGTTGTCCATGGTGTCCTGTTACATGCTGTGCTGGATGCCCTACGGCATCATGGCGCTGATGGCCACCTTCGGTAGGTCGGGACTCATCACTCCTATGGCTAGCGTGGTGCCCTCCGTCCTGGCCAAGTTCAGCACTGTCGTCAACCCAGTCGTCTACATGTTCTTCAACAACCAGtTTTATAGATGCTTCGTGGCCTTCATGAAGTGCAGCGGGGAACCCCTGTCTGTTCAAGAAGAGGAGCATGCAACTCCAAGGACACGGTTCTCTGGTTTCTTCCCCGTCCACAGACAAGCCTCCCTCAGCTCTTCACAGCGTCAGATCCTCAGCGGTTCCAGAAGCACTGCCCTCTGCAGCAGGCACAATGAGTGCCACACTCTCGTTGTCCACTACAATCCATAAAAGAGTCATCATTATGTCTAGAATCCGAAGTGCAACTAAGAGACACAAATTTCCCAACACCCTGCTATTGATTTTACATAAAAAGATATATTTCACTGTCAACTCTTAAACATTTGAATGTAAACCCAGTGCCATAGTTCAGCCTCTGCTTTGAGGCATATTTAATACATGCAAGTGCCAATGTACATGTTTTGAATGTATGCTCTGAAAATACGTGAAATGTGTTTGATGCAGGTTTGACCAAGTTAAAGCAGTCCATAGTTCTCTGACAGACATCCAGATGCAATGAATGTCTTTTACCTTTTATGTTAAATAATATCCACCCCTACTTATCAGTTTACAAGAAACCAAAACCATCTATAGGTGTTTTGGATTTTGAAGTATCATCCTGTCTTTTTGTttcttaatcttcaactttttccaaaataaaCAGTAACCCCAGCAAA

Function

NR:

description
PREDICTED: pinopsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812723.1 True 1683 mRNA 0.50 4 24459097 24465511

Neighbor

gene id symbol gene type direction distance location
cd40lg NA coding downstream 1888 24454805 ~ 24457209 (-)
LOC120566938 tm9sf2 coding downstream 40786 24408676 ~ 24418311 (-)
zic6 LOC104917996,LOC104957987,LOC103376516,LOC101465244,LOC102782580,LOC102312981 coding downstream 128337 24322057 ~ 24330760 (-)
f9a NA coding downstream 367867 24083304 ~ 24091230 (-)
arr3b NA coding downstream 558797 23894595 ~ 23900300 (-)
vgll1 NA coding upstream 7664 24473175 ~ 24476728 (-)
adgrg4a NA coding upstream 12054 24477565 ~ 24490143 (-)
fhl1a fhl1 coding upstream 62153 24527664 ~ 24541162 (-)
slc9a6a slc9a6 coding upstream 78499 24544010 ~ 24558121 (-)
drp2 drp2,LOC107724836 coding upstream 117452 24582963 ~ 24789913 (-)
G107742 NA non-coding downstream 4963 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding downstream 8328 24448121 ~ 24450769 (-)
LOC120566461 NA non-coding downstream 77785 24288149 ~ 24381312 (-)
G107667 NA non-coding downstream 199751 24199499 ~ 24259346 (-)
G107610 NA non-coding downstream 666595 23792054 ~ 23792502 (-)
G107759 NA non-coding upstream 3438 24468949 ~ 24469187 (-)
G107764 map7d3 non-coding upstream 31825 24497336 ~ 24514238 (-)
G107765 NA non-coding upstream 57612 24523123 ~ 24524589 (-)
G107772 NA non-coding upstream 77869 24543380 ~ 24543713 (-)
G107855 taf7l,taf7 non-coding upstream 95692 24561203 ~ 24563631 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 470196 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1272039 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 1282071 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 1324312 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 1465868 22990987 ~ 22993229 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 107930 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 396459 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 797661 25263172 ~ 25264864 (-)
G107989 NA other upstream 814092 25279603 ~ 25288086 (-)
diaph2 NA other upstream 1371819 25837330 ~ 26258199 (-)

Expression


Co-expression Network