cstf2 (cstf2)


Basic Information

Item Value
gene id cstf2
gene name cstf2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24846892 ~ 24859372 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812755.1
AATCTAATGTCCTGGTGTTACATTCATTTGTGTCCCCAAAATGGCGAACgtagctgctgctgccgccgctgCCGCTGCCGCTGCCATCGCCGCGAATAGAGACCCAGCTGTTGATCGTTCATTACGATCAGTGTTTGTGGGAAACATTCCGTATGAAGCCACAGAGGAACAACTGAAAGACATCTTTTCTGAAGTGGGACTTGTTGTCAGCTTCAGGTTGGTATATGACAGGGAGACAGGGAAGCCAAAGGGATATGGCTTCTGTGAATATCAAGACCAGGAGACGGCCCTTAGTGCCATGCGGAACCTGAACGGGAGAGAGTTTAGTGGTCGGGCTCTCCGTGTTGACAACGCAGCCAGTGAGAAAAACAAGGAAGAGCTCAAAAGTTTGGGAACAGGAGCCCCCATTATTGAGTCTCCTTATGGAGATACCATCCAGCCACAGGAAGCCCCAGAGTCCATCAGCAGAGCTGTGGCCAGTCTGCCACCTGAGCAGATGTTTGAACTAATGAAACAAATGAAGCTGTGTGTGCAGAACAGTCCCCAGGAGGCGAGGAACATGCTGCTGCAGAACCCTCAGCTGGCCTATGCTCTGTTGCAGGCCCAAGTGGTCATGCGGATTGTTGACCCTGAGATAGCCTTGAAAATGCTCCACCGTCAAACACCAGTCCAGCCTCTGATTCCCAGCGGGCAGGCTGGAGGAGCACCACCGCTCAACCCACCTCCTGCTCCACCCAGCGCGCCAGTGTCTCAGCCACAGCCTGTGCCTGGAATGCATGTCAATGGAGCCCCTCAAATGATGCAGCCCCCCAACATGGGTGTTGTCCCTGGACCAATGTCTGTACCAGGCCCGGGACAAGGACCAGCACCAGTCGGACCTCCAGGAAACCTTCAGCATTCTCCCACAGGATCATCTGGGCAAGCTGCTATCGAGCGGTCGCAAGAGTTACAAGACACAAGACCAGGTGGTATCCCCCCCAGAGGCCTGCTGGGAGATGGTCCGAATGACCCCCGGGGTGGAACTCTGCTGAATGTCACTGGAGAGGTCATAGACCCCAACCGGGGTTACATGGGAGCTCCACCGCCCCACCAAGCCCCACCTGTACACATGGCCCAAATGGCAAGTGGACCCCCTCCGGATATGAGAGGCCCTCCAATGGACATGAGAGGCCCACCCATGGTTGAACCACGAAACATGATGGGTGACCCCAGAGGGCCCCAGATGATGGAGCCACGCGGACCCCCGATGGAAACCAGAGGTCGTGACCCGAGGGCGATGGACGCTCGTGGTCCTGTGACGGCTCAGAGGGTTCCCATGGCGGCAGGGATGCAAGGCCCCGTTCCTCATGGCATGGCTCCGAATGCTCCTCCACCTGCAAGACCGGGTCCTGGTATCTCCGGCGTTCCTCCATCAGGAGGAGGCTTCAGTCCGGGGCAGAGCCAGGTCTCTACACAGGACCAGGAGAAGGCTGCTCTGATTATGCAAGTCCTGCAGCTGACCCCAGAACAGATCGCCATGTTGCCCCCAGAGCAGCGGCAGAGCATTCTCATCCTCAAAGAGCAGATTCAGAAGACTGCAGGAGGGGCGCCTTGATGGTGTGACTGaggaaaagcttcaaaaagGGCCCACAACCTGGTCCACCCCGCTGACCCTGTCACCTTGAGCTCGAACAGGTCTGAAGACGTCTCATTTTAGTTTGGAATAATgtatagtttgtttttttttatatattttctgtATGAAAGAGTCAGGTTGTTGCTCGTGAGACATTTGAGTGGACGATGAATGCTGAACCGATTTTGAAAAAAGATCAGGACTGGATTGTCATGAGGTTTCATCCTTTCGCTCCAAAGCCGACTGTTTTCATGTTATCGGCTCTGGAAACTGTTTGTCTGCATATTGTTttgtcaataaaacaaaagaaaagata
>XM_039812756.1
AATCTAATGTCCTGGTGTTACATTCATTTGTGTCCCCAAAATGGCGAACgtagctgctgctgccgccgctgCCGCTGCCGCTGCCATCGCCGCGAATAGAGACCCAGCTGTTGATCGTTCATTACGATCAGTGTTTGTGGGAAACATTCCGTATGAAGCCACAGAGGAACAACTGAAAGACATCTTTTCTGAAGTGGGACTTGTTGTCAGCTTCAGGTTGGTATATGACAGGGAGACAGGGAAGCCAAAGGGATATGGCTTCTGTGAATATCAAGACCAGGAGACGGCCCTTAGTGCCATGCGGAACCTGAACGGGAGAGAGTTTAGTGGTCGGGCTCTCCGTGTTGACAACGCAGCCAGTGAGAAAAACAAGGAAGAGCTCAAAAGTTTGGGAACAGGAGCCCCCATTATTGAGTCTCCTTATGGAGATACCATCCAGCCACAGGAAGCCCCAGAGTCCATCAGCAGAGCTGTGGCCAGTCTGCCACCTGAGCAGATGTTTGAACTAATGAAACAAATGAAGCTGTGTGTGCAGAACAGTCCCCAGGAGGCGAGGAACATGCTGCTGCAGAACCCTCAGCTGGCCTATGCTCTGTTGCAGGCCCAAGTGGTCATGCGGATTGTTGACCCTGAGATAGCCTTGAAAATGCTCCACCGTCAAACACCAGTCCAGCCTCTGATTCCCAGCGGGCAGGCTGGAGGAGCACCACCGCTCAACCCACCTCCTGCTCCACCCAGCGCGCCAGTGTCTCAGCCACAGCCTGTGCCTGGAATGCATGTCAATGGAGCCCCTCAAATGATGCAGCCCCCCAACATGGGTGTTGTCCCTGGACCAATGTCTGTACCAGGCCCGGGACAAGGACCAGCACCAGTCGGACCTCCAGGAAACCTTCAGCATTCTCCCACAGGATCATCTGGGCAAGCTGCTATCGAGCGGTCGCAAGAGTTACAAGACACAAGACCAGGTGGTATCCCCCCCAGAGGCCTGCTGGGAGATGGTCCGAATGACCCCCGGGGTGGAACTCTGCTGAATGTCACTGGAGAGGTCATAGACCCCAACCGGGGTTACATGGGAGCTCCACCGCCCCACCAAGCCCCACCTGTACACATGGCCCAAATGGCAAGTGGACCCCCTCCGGATATGAGAGGCCCTCCAATGGACATGAGAGGCCCACCCATGGTTGAACCACGAAACATGATGGGTGACCCCAGAGGGCCCCAGATGATGGAGCCACGCGGACCCCCGATGGAAACCAGAGGTCGTGACCCGAGGGCGATGGACGCTCGTGGTCCTGTGACGGCTCAGAGGGTTCCCATGGCGGCAGGGATGCAAGGCCCCGTTCCTCATGGCATGGCTCCGAATGCTCCTCCACCTGCAAGACCGGGTCCTGGTATCTCCGGCGTTCCTCCATCAGGAGGAGGCTTCAGTCCGGGGCAGAGCCAGGTCTCTACACAGGACCAGGAGAAGGCTGCTCTGATTATGCAAGTCCTGCAGCTGACCCCAGAACAGATCGCCATGTTGCCCCCAGAGCAGCGGCAGAGCATTCTCATCCTCAAAGAGCAGATTCAGAAGACTGCAGGAGGGGCGCCTTGATGGTGTGACTGaggaaaagcttcaaaaagGTTTAGGGGCCCACAACCTGGTCCACCCCGCTGACCCTGTCACCTTGAGCTCGAACAGGTCTGAAGACGTCTCATTTTAGTTTGGAATAATgtatagtttgtttttttttatatattttctgtATGAAAGAGTCAGGTTGTTGCTCGTGAGACATTTGAGTGGACGATGAATGCTGAACCGATTTTGAAAAAAGATCAGGACTGGATTGTCATGAGGTTTCATCCTTTCGCTCCAAAGCCGACTGTTTTCATGTTATCGGCTCTGGAAACTGTTTGTCTGCATATTGTTttgtcaataaaacaaaagaaaagata
>XM_039812757.1
ATCTAATGTCCTGGTGTTACATTCATTTGTGTCCCCAAAATGGCGAACgtagctgctgctgccgccgctgCCGCTGCCGCTGCCATCGCCGCGAATAGAGACCCAGCTGTTGATCGTTCATTACGATCAGTGTTTGTGGGAAACATTCCGTATGAAGCCACAGAGGAACAACTGAAAGACATCTTTTCTGAAGTGGGACTTGTTGTCAGCTTCAGGTTGGTATATGACAGGGAGACAGGGAAGCCAAAGGGATATGGCTTCTGTGAATATCAAGACCAGGAGACGGCCCTTAGTGCCATGCGGAACCTGAACGGGAGAGAGTTTAGTGGTCGGGCTCTCCGTGTTGACAACGCAGCCAGTGAGAAAAACAAGGAAGAGCTCAAAAGTTTGGGAACAGGAGCCCCCATTATTGAGTCTCCTTATGGAGATACCATCCAGCCACAGGAAGCCCCAGAGTCCATCAGCAGAGCTGTGGCCAGTCTGCCACCTGAGCAGATGTTTGAACTAATGAAACAAATGAAGCTGTGTGTGCAGAACAGTCCCCAGGAGGCGAGGAACATGCTGCTGCAGAACCCTCAGCTGGCCTATGCTCTGTTGCAGGCCCAAGTGGTCATGCGGATTGTTGACCCTGAGATAGCCTTGAAAATGCTCCACCGTCAAACACCAGTCCAGCCTCTGATTCCCAGCGGGCAGGCTGGAGGAGCACCACCGCTCAACCCACCTCCTGCTCCACCCAGCGCGCCAGTGTCTCAGCCACAGCCTGTGCCTGGAATGCATGTCAATGGAGCCCCTCAAATGATGCAGCCCCCCAACATGGGTGTTGTCCCTGGACCAATGTCTGTACCAGGCCCGGGACAAGGACCAGCACCAGTCGGACCTCCAGGAAACCTTCAGCATTCTCCCACAGGATCATCTGGGCAAGCTGCTATCGAGCGGTCGCAAGGACCAGGTGGTATCCCCCCCAGAGGCCTGCTGGGAGATGGTCCGAATGACCCCCGGGGTGGAACTCTGCTGAATGTCACTGGAGAGGTCATAGACCCCAACCGGGGTTACATGGGAGCTCCACCGCCCCACCAAGCCCCACCTGTACACATGGCCCAAATGGCAAGTGGACCCCCTCCGGATATGAGAGGCCCTCCAATGGACATGAGAGGCCCACCCATGGTTGAACCACGAAACATGATGGGTGACCCCAGAGGGCCCCAGATGATGGAGCCACGCGGACCCCCGATGGAAACCAGAGGTCGTGACCCGAGGGCGATGGACGCTCGTGGTCCTGTGACGGCTCAGAGGGTTCCCATGGCGGCAGGGATGCAAGGCCCCGTTCCTCATGGCATGGCTCCGAATGCTCCTCCACCTGCAAGACCGGGTCCTGGTATCTCCGGCGTTCCTCCATCAGGAGGAGGCTTCAGTCCGGGGCAGAGCCAGGTCTCTACACAGGACCAGGAGAAGGCTGCTCTGATTATGCAAGTCCTGCAGCTGACCCCAGAACAGATCGCCATGTTGCCCCCAGAGCAGCGGCAGAGCATTCTCATCCTCAAAGAGCAGATTCAGAAGACTGCAGGAGGGGCGCCTTGATGGTGTGACTGaggaaaagcttcaaaaagGGCCCACAACCTGGTCCACCCCGCTGACCCTGTCACCTTGAGCTCGAACAGGTCTGAAGACGTCTCATTTTAGTTTGGAATAATgtatagtttgtttttttttatatattttctgtATGAAAGAGTCAGGTTGTTGCTCGTGAGACATTTGAGTGGACGATGAATGCTGAACCGATTTTGAAAAAAGATCAGGACTGGATTGTCATGAGGTTTCATCCTTTCGCTCCAAAGCCGACTGTTTTCATGTTATCGGCTCTGGAAACTGTTTGTCTGCATATTGTTttgtcaataaaacaaaagaaaagata
>XM_039812758.1
ATCTAATGTCCTGGTGTTACATTCATTTGTGTCCCCAAAATGGCGAACgtagctgctgctgccgccgctgCCGCTGCCGCTGCCATCGCCGCGAATAGAGACCCAGCTGTTGATCGTTCATTACGATCAGTGTTTGTGGGAAACATTCCGTATGAAGCCACAGAGGAACAACTGAAAGACATCTTTTCTGAAGTGGGACTTGTTGTCAGCTTCAGGTTGGTATATGACAGGGAGACAGGGAAGCCAAAGGGATATGGCTTCTGTGAATATCAAGACCAGGAGACGGCCCTTAGTGCCATGCGGAACCTGAACGGGAGAGAGTTTAGTGGTCGGGCTCTCCGTGTTGACAACGCAGCCAGTGAGAAAAACAAGGAAGAGCTCAAAAGTTTGGGAACAGGAGCCCCCATTATTGAGTCTCCTTATGGAGATACCATCCAGCCACAGGAAGCCCCAGAGTCCATCAGCAGAGCTGTGGCCAGTCTGCCACCTGAGCAGATGTTTGAACTAATGAAACAAATGAAGCTGTGTGTGCAGAACAGTCCCCAGGAGGCGAGGAACATGCTGCTGCAGAACCCTCAGCTGGCCTATGCTCTGTTGCAGGCCCAAGTGGTCATGCGGATTGTTGACCCTGAGATAGCCTTGAAAATGCTCCACCGTCAAACACCAGTCCAGCCTCTGATTCCCAGCGGGCAGGCTGGAGGAGCACCACCGCTCAACCCACCTCCTGCTCCACCCAGCGCGCCAGTGTCTCAGCCACAGCCTGTGCCTGGAATGCATGTCAATGGAGCCCCTCAAATGATGCAGCCCCCCAACATGGGTGTTGTCCCTGGACCAATGTCTGTACCAGGCCCGGGACAAGGACCAGCACCAGTCGGACCTCCAGGACCAGGTGGTATCCCCCCCAGAGGCCTGCTGGGAGATGGTCCGAATGACCCCCGGGGTGGAACTCTGCTGAATGTCACTGGAGAGGTCATAGACCCCAACCGGGGTTACATGGGAGCTCCACCGCCCCACCAAGCCCCACCTGTACACATGGCCCAAATGGCAAGTGGACCCCCTCCGGATATGAGAGGCCCTCCAATGGACATGAGAGGCCCACCCATGGTTGAACCACGAAACATGATGGGTGACCCCAGAGGGCCCCAGATGATGGAGCCACGCGGACCCCCGATGGAAACCAGAGGTCGTGACCCGAGGGCGATGGACGCTCGTGGTCCTGTGACGGCTCAGAGGGTTCCCATGGCGGCAGGGATGCAAGGCCCCGTTCCTCATGGCATGGCTCCGAATGCTCCTCCACCTGCAAGACCGGGTCCTGGTATCTCCGGCGTTCCTCCATCAGGAGGAGGCTTCAGTCCGGGGCAGAGCCAGGTCTCTACACAGGACCAGGAGAAGGCTGCTCTGATTATGCAAGTCCTGCAGCTGACCCCAGAACAGATCGCCATGTTGCCCCCAGAGCAGCGGCAGAGCATTCTCATCCTCAAAGAGCAGATTCAGAAGACTGCAGGAGGGGCGCCTTGATGGTGTGACTGaggaaaagcttcaaaaagGGCCCACAACCTGGTCCACCCCGCTGACCCTGTCACCTTGAGCTCGAACAGGTCTGAAGACGTCTCATTTTAGTTTGGAATAATgtatagtttgtttttttttatatattttctgtATGAAAGAGTCAGGTTGTTGCTCGTGAGACATTTGAGTGGACGATGAATGCTGAACCGATTTTGAAAAAAGATCAGGACTGGATTGTCATGAGGTTTCATCCTTTCGCTCCAAAGCCGACTGTTTTCATGTTATCGGCTCTGGAAACTGTTTGTCTGCATATTGTTttgtcaataaaacaaaagaaaagata

Function

symbol description
cstf2 Predicted to enable mRNA binding activity. Predicted to be involved in pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA polyadenylation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to several human genes including CSTF2 (cleavage stimulation factor subunit 2).

NR:

description
cleavage stimulation factor subunit 2 isoform X4

GO: NA

KEGG:

id description
K14407 CSTF2, RNA15; cleavage stimulation factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812755.1 False 1931 mRNA 0.54 15 24846892 24859372
XM_039812756.1 True 1938 mRNA 0.54 15 24846892 24859372
XM_039812757.1 False 1915 mRNA 0.54 14 24846892 24859371
XM_039812758.1 False 1855 mRNA 0.54 13 24846892 24859371

Neighbor

gene id symbol gene type direction distance location
arl13a arl13a,LOC102776915,LOC103352893 coding downstream 26399 24815085 ~ 24820493 (-)
tmem35 tmem35a coding downstream 36959 24807285 ~ 24809933 (-)
cenpi cenpi coding downstream 41154 24791383 ~ 24805738 (-)
drp2 drp2,LOC107724836 coding downstream 56979 24582963 ~ 24789913 (-)
slc9a6a slc9a6 coding downstream 288771 24544010 ~ 24558121 (-)
mid1ip1l mid1ip1,LOC104928730,LOC103352948 coding upstream 49524 24908896 ~ 24911419 (-)
tspan7 tspan6,LOC104955938,LOC107378166 coding upstream 53191 24912563 ~ 24918751 (-)
sytl4 NA coding upstream 69329 24928701 ~ 24942371 (-)
trmt12 trmt12,LOC106611794 coding upstream 84076 24943448 ~ 24948186 (-)
sash3 sash3 coding upstream 124121 24983493 ~ 24993304 (-)
G107880 NA non-coding downstream 5840 24840827 ~ 24841052 (-)
G107874 xkrx,LOC102776626 non-coding downstream 11544 24824081 ~ 24835348 (-)
G107855 taf7l,taf7 non-coding downstream 283261 24561203 ~ 24563631 (-)
G107772 NA non-coding downstream 303179 24543380 ~ 24543713 (-)
G107765 NA non-coding downstream 322303 24523123 ~ 24524589 (-)
G107885 LOC104956976 non-coding upstream 17450 24876822 ~ 24881870 (-)
G107887 NA non-coding upstream 23758 24883130 ~ 24883757 (-)
G107888 bcorl1 non-coding upstream 24628 24884000 ~ 24884256 (-)
G107889 NA non-coding upstream 25637 24885009 ~ 24885427 (-)
G107890 NA non-coding upstream 30929 24890301 ~ 24890716 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other downstream 267793 24573441 ~ 24579099 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 857991 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1659834 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 1669866 23092565 ~ 23177026 (-)
trnav-uac_15 NA other upstream 2598 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 403800 25263172 ~ 25264864 (-)
G107989 NA other upstream 420231 25279603 ~ 25288086 (-)
diaph2 NA other upstream 977958 25837330 ~ 26258199 (-)
rpl36a LOC106604455,LOC100304549,LOC100219516 other upstream 1598623 26457995 ~ 26460732 (-)

Expression


Co-expression Network