arl13a (arl13a,LOC102776915,LOC103352893)


Basic Information

Item Value
gene id arl13a
gene name arl13a,LOC102776915,LOC103352893
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24815085 ~ 24820493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812761.1
ACCTCCTGCATGGGGTGACTAAAGGCTTACCGTGAGCCTGATTAGTTTTGTAGCTGGTGGGTACAAGATGTTATTAGAGAGGAGCACccaaacaaatgcatggacATAGACTTACTTCTGTGCCAGTTCCAGAGAAGATGGTGGCCGCTGTGCTCACCTTGCTCACCTCAAGGAAACATGTTCAACCTGATGAGTAACTGCTGCACCTGGTTCTCCAAAATACAGGAGCCAATCAGGAAAGTGACCATTCTGGTAGTTGGTCTTGACAAAGCAGGAAAAACATCCTCCATCAGAGGAATGTTAAGAGTCCCCAATGGTGTGGAAACAGGACCCACCAATGGCTGCGTACGACATGAGCTGAGAGTGGAGAACTACCAGGTCACCTTGTTGGATGTGGGGGGCTCAGCAGAGTCGAGAGGAGCCTGGAGGGAGCTCTGTGGAGAAGCCCATGGGATCATCTTTGTGGTGGACTCTAGTGACAGGCAAAGGATAAAGGAGGTCAAGGAGGTTCTTGCTGACCAGCTGAAACAACCGAGAGTGGCAGGAAAACCCCTACTAGTGTTGGCTAACAAACAGGACAAAATGAACGCTTTGCTGGGAAGTGAGCTGATTGAGATTCTGTCCCTGGAGGAGCTGGTCAACCAGAGCCGCTCTCTGTGCCATATTGAGCCTTGTTCAGCCTTAATGGACCTGCGACGCTGGTCGGACAGAAAGACTCTACGAGGCCTTCGCTGGTTGCTGCGTGCCGTTTGTCTGGATTACCCCGAGCTGTGTACTCGTGTAGCCCAGGACAGCAAGAGGCCTCTGGAAccaagagagagggaaaagacCTGGAAAACAGAGAAAGTTTGCAGAAAATCCAAGGGGGAACGAATGCGATCCAGCAAACCAGATCTTCGCCAGGTTCATCGGctaaaagaaaagcagaaaaatacAAAGGGTGAAGGAAAGATGCAACCCATTCGAAACTTGCTGCAAAAGGAAACCAGTCTgaaaaagaagacaaagaagaagaagaagccggTTAAGGTCCAGGAAGGTGAAAAGGATCAAGTAGAAGCAAATgaacaggaggaggaagaggagggtgaCGGTAATGAAGGAGAGCATGAAAACTCTGGCCACAGAGAGAAAGCCAGCAGTGCCCTGATCCCCCCGAAAAAAGGCAAACCAAAACGCAAAACAAAAGTGAAGGAAGAGACTCTGGACGTGCCAGCATCACCAGACAATGATGAGAAGCCGCTTAAAGCTAAAGGggaaagaaggaagaagaagacagtTGTCAAAGTGAAAAGGAAGAACAAGATCAACACAGAGGAGATGTCTGGAGCTTACGCGCAACCTGTGGACCTGTCTGCAACCTTTGATCTTTACCGAAAAGCAATACTGGCTCTGAAGGAACATCAGAATCAGGGACAGTGAGAGTCAATGTGCATCCTGAGTGTGAGGAGGTGGTCCACGGCGGTCGGACACGGTCACACTTCATCACTTCAAAGACTGACACAGAGATTCTGTTATATGTCTTCATCACTTTCTATAAACTTCAGACCTGATCCCTGAACCTTTGGAGTGAAACTGCAAATTCTAATGTGTAGGGGGCACGTCTGCATAATCATGTAATGATAGAGTACTATTagtaataaaaaattaaaacattacagaaaaagatacataacaatgtaaacattttaaaacgtTAAAGATGAAATTGTGTACCTGGCCAAATTGTTAAAGGCGATTTTGTTTGTATAAATCTATGCATT

Function

symbol description
arl13a Predicted to enable GTP binding activity. Predicted to be involved in non-motile cilium assembly and receptor localization to non-motile cilium. Predicted to be active in ciliary membrane and non-motile cilium. Is expressed in liver; mandibular arch skeleton; nervous system; and pronephros. Orthologous to human ARL13A (ADP ribosylation factor like GTPase 13A).

NR:

description
ADP-ribosylation factor-like protein 13B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812761.1 True 1763 mRNA 0.47 10 24815085 24820493

Neighbor

gene id symbol gene type direction distance location
tmem35 tmem35a coding downstream 5152 24807285 ~ 24809933 (-)
cenpi cenpi coding downstream 9347 24791383 ~ 24805738 (-)
drp2 drp2,LOC107724836 coding downstream 25172 24582963 ~ 24789913 (-)
slc9a6a slc9a6 coding downstream 256964 24544010 ~ 24558121 (-)
fhl1a fhl1 coding downstream 273923 24527664 ~ 24541162 (-)
cstf2 cstf2 coding upstream 26399 24846892 ~ 24859372 (-)
mid1ip1l mid1ip1,LOC104928730,LOC103352948 coding upstream 88403 24908896 ~ 24911419 (-)
tspan7 tspan6,LOC104955938,LOC107378166 coding upstream 92070 24912563 ~ 24918751 (-)
sytl4 NA coding upstream 108208 24928701 ~ 24942371 (-)
trmt12 trmt12,LOC106611794 coding upstream 122955 24943448 ~ 24948186 (-)
G107855 taf7l,taf7 non-coding downstream 251454 24561203 ~ 24563631 (-)
G107772 NA non-coding downstream 271372 24543380 ~ 24543713 (-)
G107765 NA non-coding downstream 290496 24523123 ~ 24524589 (-)
G107764 map7d3 non-coding downstream 300847 24497336 ~ 24514238 (-)
G107759 NA non-coding downstream 345898 24468949 ~ 24469187 (-)
G107874 xkrx,LOC102776626 non-coding upstream 3588 24824081 ~ 24835348 (-)
G107880 NA non-coding upstream 20334 24840827 ~ 24841052 (-)
G107885 LOC104956976 non-coding upstream 56329 24876822 ~ 24881870 (-)
G107887 NA non-coding upstream 62637 24883130 ~ 24883757 (-)
G107888 bcorl1 non-coding upstream 63507 24884000 ~ 24884256 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other downstream 235986 24573441 ~ 24579099 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 826184 23884588 ~ 23988901 (-)
rnaseh2c rnaseh2c other downstream 1628027 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 1638059 23092565 ~ 23177026 (-)
trnav-uac_15 NA other upstream 41477 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 442679 25263172 ~ 25264864 (-)
G107989 NA other upstream 459110 25279603 ~ 25288086 (-)
diaph2 NA other upstream 1016837 25837330 ~ 26258199 (-)
rpl36a LOC106604455,LOC100304549,LOC100219516 other upstream 1637502 26457995 ~ 26460732 (-)

Expression


Co-expression Network