XLOC_004707


Basic Information

Item Value
gene id XLOC_004707
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23037447 ~ 23040091 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010928
ACCTTGACTACTCCATTTTCATGCATGGTGATGCAGTTGTTGGGGTCTTTAGACAGCTCAAACAGGGCTCGTGCTGTTGCTTGATGCACTGAAGGATCTTTTGAGTAAAGATATCGTACTAGAGGGGCAACAGCTCCAGCCTCCCCAAAAGACACACAATTACTCCCCCATGTACAGCAGCATGCGATGGCTTCCGCTAGGTATCGCCTTAACTTATCCTCCTCCTGTACAACCACTGTGTTGGTAAGACTTGCCAGCATGGGAACAACACCATGGTCTGTAATAACTGCCAGGTTCTCCACATCTTTGGCGATTTTAGCAATCGCTGCACACACACTGGCCAGCACGTCTTTATTCTGCGATTTTAGCAAATTAACAATGAGCTCCAAACCACCCACAAAGGAACGCACCATTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010928 True 417 lncRNA 0.48 2 23037447 23040091

Neighbor

gene id symbol gene type direction distance location
XLOC_004706 rab18a coding upstream 103923 22921477 ~ 22933524 (+)
XLOC_004705 afap1 coding upstream 121133 22823219 ~ 22916314 (+)
XLOC_004704 cdca9 coding upstream 221600 22672323 ~ 22815847 (+)
XLOC_004703 si:dkey-219e21.4 coding upstream 372884 22657923 ~ 22664563 (+)
XLOC_004702 mfsd8 coding upstream 392232 22628704 ~ 22645215 (+)
XLOC_004708 BX927205.1 coding downstream 70072 23110163 ~ 23110277 (+)
XLOC_004709 waca coding downstream 331451 23371542 ~ 23416061 (+)
XLOC_004710 bambia coding downstream 384017 23424108 ~ 23430356 (+)
XLOC_004711 NA coding downstream 414338 23454429 ~ 23605722 (+)
XLOC_004712 BX005058.1 coding downstream 537175 23577266 ~ 23577391 (+)
XLOC_004701 NA non-coding upstream 418325 22618388 ~ 22619122 (+)
XLOC_004700 CR925753.1 non-coding upstream 458917 22578404 ~ 22578530 (+)
XLOC_004696 NA non-coding upstream 732606 22258962 ~ 22304841 (+)
XLOC_004695 NA non-coding upstream 1017677 22017946 ~ 22019770 (+)
XLOC_004694 NA non-coding upstream 1238051 21757817 ~ 21799396 (+)
XLOC_004713 NA non-coding downstream 609801 23649892 ~ 23651056 (+)
XLOC_004716 NA non-coding downstream 738861 23778952 ~ 23779177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019214 NA coding CM030124.1 CM030124.1 9357098 ~ 9376745 (+)