si:ch211-255i20.3 (LOC104949360,LOC108236641,LOC104928618,LOC107379503)


Basic Information

Item Value
gene id si:ch211-255i20.3
gene name LOC104949360,LOC108236641,LOC104928618,LOC107379503
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 28575742 ~ 28583287 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812781.1
TTGAACAGCAATAAGAACTAACCATCTGGTGCGAGAGGGAGCTCTCCTTCCGTTTTGAAGGACGAAGGAGAGGAAAATTACTGAGACAGAGAATCAGGAGAAACAGGAGCAGATTCATTTTCTGGCTTTCCCTAACAGTAGTTCCATCAGCTAAGTCTGAGAGAAGTAAGTGTAAAGTATACAAGTACACAGTACTATATGATGAGAATATGTTGCAGTGTGTATACAATACAAGGGATTTTATTGCCATAACCAATCAGGTTTCCAGGATTTTTTTGGTATGCTCAGGAtacaggaaaaaaggaaaatgtccCCCCACATAATGTTTATAATATACAACAAACAACAAGATAAATACTCTTGCCAtaggaattttttttaatttgtttcaaAATGAAGGAATTGCTGTAAGAACGAACTAAAGTCGCACTATGTGGTTCACAGTAAATTGCAGATATTAATGATAGTATTCATTAAAAGATCGGTTTTGTAATACATTGCAGTGAGACATGCTATAAATCCATTGCAGTTTAAAACTGAATCTATTATTTCAATGGCAGGTATATTAAACGTATTGATTTAGTATTCACACTCTGTAAAACCACTGAAGTGTGGGAGGAGAAGGAAAAATGGATTCTTTGCTTACTTTGAGGAATAACAACTTTTGCAGATGCTAAATATGAGAAGGATTTATtctgtgtgtggggtgtgggggTTTACTTTAAAAGTGACCTCATCTAGGGTTAGCATATGGCAACTATTGTATGTAATGGTTTGGATTACAATTGCCACTCAATTTCTGAAGACATTTGAACCTTCTTTCATACTGTGGTAAAAGACACAGACTAGTAATCCTTACTGCGTTACTAGGTTAAAAAGGTGAATACCATATTTTACTAATAAAAATTAAGTCAGTAGGTCAGATGAGAAGTGCATGTCTAATTTGTCAAGATAAACTAATAATCACTATACCACAGCAGTGTGCTCATACATATTCTCAGCCTAGAGGGACAACCAAATGGATAAACACCTTCGTGGATATGTTACTTCCTGCATCTTGTTGATAGCTAGTGATATATCCCTCAAGGCACAGTTCAACATTTATCACTTTGGATTTAGTGTAGTTAATGCAGAGCAGGCAATTGTTCCTGCGATGGAAATAAGTCTACTGCAGTGTTAAACAAGTCTACTGCGGTGTTAAACAAGTATACtgcaataaatattttctgtttaatagCAAGGAAATATATAAATGTTGCATGTGCCAGAGTGCTACTCCTACTTCCATATTGGTGTATTATGAGCACACTGTTGGATTATCTGTATCTGCAGCAAGTAGTCAGTCCCAGTCAATCGCTATTCTTAGCAGCTTTGCTATTGGCTCCCAGTTTAACCAGTCACAAAATGACCAGAATGTCTCGTCACACaaagcagcacctgtgagtttctCACACTCAAACTGTCTCCCTTATAGCCTTCCACTTTAAATACACGCTATAGGACATGAGTGTTTGGCTAGTCGATGAAAAATACCTCAATCCTGAGCTAGAGTTCGCagatctacaaaaaaaaaaaaaaaaaacgtcaaactGGAACTACAGGCCAACATTTGGACGTCACATGTGTTGTAATTTAATAGCTCATTGTTAACTGAAAATGGGTTTGCAAGGCATTGGCTTTCTTCTGCAGTGTTACCTGATGTTGGCAGCAGCCATGTATTTTGATCTCGGAGAGCAGGAGGAAAAATGCATCATCGAGGAGATTCCTGAAGACATGCTGGTCACCGGTTATTTCTTGTTGGAGCCTTGGGATTTGAAGGTGTATTCCCACTACCCACAACTCGGCGTCACTGTGACAGTCAGAGACCCAAACCATGAGGTTCTGATGTCCAAACGCTACGGTAAATTTAGTAAATTCACCTTCACAGCTCACGCCTCTGGTCAGCACTACCTTTGCTTCCAAACCAACTCCACTAGGTTTTCTGTCTTTGCTGGAGAGAAGCTGAAGCTACATTTGGACGTTCAGGTGGGAGAGCACTCGATTAACCCCAAAACCGACAAGACCAAAGACAACATGGAGACTCTGGAGAACAGCCTCAGCCACCTCATTGATCAGATGATGTACATCATCAGGCAGCAGGAGTACCAGAGGgagaaagaggaggtgtTTCGTCAGATCGGGGAGGACACCAACAGTAAAGTGCTATGGTGGGCTGTGGTGCAGACCTTCATTCTGCTGTCAGTTGGTTTCTGGCAGATGAAACGACTCAAAGACTTCTTCATCGCCAAGAAGCTGGTCTGATGATGAACTCTGACCTGTCAGCTTTAAGCCTGATGACCGCATGTCCTGCCCATACCTGTCCAAATATATACTTTGCTGCCCTTAAAACAGAAGGCTATTGCATAAGGCTGGACTGTAATCTTGAATTGGGCTCATATTCCCACACCTGTTTATGCTTCTGTTAAAATAAATTGATATCCGTA

Function

NR:

description
transmembrane emp24 domain-containing protein 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812781.1 True 2483 mRNA 0.40 5 28575742 28583287

Neighbor

gene id symbol gene type direction distance location
LOC120566384 NA coding downstream 122 28567907 ~ 28575620 (-)
slit3 LOC108236657,LOC102212202,LOC101480300 coding downstream 154570 28172470 ~ 28421172 (-)
LOC120567283 NA coding downstream 417235 28156623 ~ 28158507 (-)
LOC120566373 NA coding downstream 424990 28147962 ~ 28150752 (-)
LOC120566555 NA coding downstream 449063 28125126 ~ 28126679 (-)
spon2b spon2 coding upstream 122 28583409 ~ 28591619 (-)
LOC120566377 ctbp1,LOC100694320,LOC101482142 coding upstream 40012 28623299 ~ 28653207 (-)
lingo2 lingo2,LOC103356499 coding upstream 406336 28989623 ~ 29235599 (-)
eif4ea LOC102291913,LOC100695556,LOC103355613,LOC102778934,LOC108236682 coding upstream 928409 29511696 ~ 29519263 (-)
LOC120567329 LOC107095807,LOC107379637,LOC102193053,LOC103355614,LOC108236668 coding upstream 940284 29523571 ~ 29527992 (-)
G108476 NA non-coding downstream 17539 28556936 ~ 28558203 (-)
LOC120566468 NA non-coding downstream 479615 28095648 ~ 28096127 (-)
LOC120566994 NA non-coding downstream 570893 28003534 ~ 28004849 (-)
G108424 NA non-coding downstream 593413 27981958 ~ 27982329 (-)
G108422 NA non-coding downstream 594295 27981050 ~ 27981447 (-)
LOC120566386 NA non-coding upstream 74737 28658024 ~ 28662232 (-)
G108524 LOC104954097 non-coding upstream 94992 28678279 ~ 28681099 (-)
LOC120567081 NA non-coding upstream 249888 28833175 ~ 28928905 (-)
G108560 NA non-coding upstream 690307 29273594 ~ 29273954 (-)
LOC120567321 NA non-coding upstream 970148 29553435 ~ 29750536 (-)
LOC120566547 NA other downstream 537042 28024570 ~ 28038700 (-)
G108433 neto1,LOC101071133 other downstream 552513 28021737 ~ 28023229 (-)
LOC120566991 NA other downstream 620048 27952256 ~ 27955694 (-)
LOC120567057 NA other downstream 736635 27837568 ~ 27839107 (-)
aurkb fbxl12,LOC103367279,LOC104928693,LOC101076892,LOC103149573 other downstream 785531 27780132 ~ 27790211 (-)
fam13b fam13b,LOC102777128 other upstream 131576 28714863 ~ 28795508 (-)
cxcl14 cxcl14 other upstream 214011 28797298 ~ 28807994 (-)
gask1b fam198b,LOC102776406 other upstream 1763691 30346978 ~ 30356856 (-)
G108777 rapgef2 other upstream 2077625 30660912 ~ 30661623 (-)
G108781 rapgef2 other upstream 2086244 30669531 ~ 30670849 (-)

Expression


Co-expression Network