Gene
RNA
| Item | Value |
|---|---|
| gene id | polr1d |
| gene name | polr1d,LOC104920592,LOC104965767,LOC103366847 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053121.1 |
| NCBI id | CM020918.1 |
| chromosome length | 40300294 |
| location | 2664227 ~ 2673203 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| polr1d | Predicted to enable DNA binding activity and protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within cartilage development; embryonic viscerocranium morphogenesis; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex and RNA polymerase III complex. Is expressed in eye; lens; midbrain hindbrain boundary; optic tectum; and pharyngeal arch. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 2. Orthologous to human POLR1D (RNA polymerase I and III subunit D). |
| description |
|---|
| DNA-directed RNA polymerases I and III subunit RPAC2-like |
| id | description |
|---|---|
| K03020 | RPC19, POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039812799.1 | True | 704 | mRNA | 0.44 | 5 | 2664227 | 2673203 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120566298 | NA | coding | downstream | 73608 | 2587617 ~ 2590619 (-) |
| lpar4 | lpar4 | coding | downstream | 88938 | 2567904 ~ 2575289 (-) |
| p2ry10 | NA | coding | downstream | 99047 | 2558237 ~ 2565180 (-) |
| gpr174 | LOC103366855,LOC104946189,LOC104946188 | coding | downstream | 106637 | 2547232 ~ 2557590 (-) |
| tbx22 | LOC103366841 | coding | downstream | 148663 | 2507602 ~ 2515564 (-) |
| pdgfrl | pdgfrl,LOC100690066,LOC101468828 | coding | upstream | 40971 | 2714174 ~ 2720027 (-) |
| zdhhc2 | zdhhc2 | coding | upstream | 102202 | 2775405 ~ 2793673 (-) |
| micu3b | micu3,LOC104941480,LOC104920617 | coding | upstream | 123046 | 2796249 ~ 2816202 (-) |
| her11 | NA | coding | upstream | 169884 | 2843087 ~ 2844699 (-) |
| pfdn6 | pfdn6 | coding | upstream | 181627 | 2854830 ~ 2859046 (-) |
| G102849 | NA | non-coding | downstream | 6607 | 2625574 ~ 2657620 (-) |
| G102824 | NA | non-coding | downstream | 117275 | 2531508 ~ 2546952 (-) |
| LOC120566605 | NA | non-coding | downstream | 126306 | 2536661 ~ 2537921 (-) |
| G102816 | NA | non-coding | downstream | 130688 | 2458068 ~ 2533539 (-) |
| G102822 | NA | non-coding | downstream | 162832 | 2500656 ~ 2501395 (-) |
| G102913 | NA | non-coding | upstream | 13661 | 2686864 ~ 2687080 (-) |
| G102914 | NA | non-coding | upstream | 14806 | 2688009 ~ 2690563 (-) |
| G102915 | NA | non-coding | upstream | 17628 | 2690831 ~ 2693555 (-) |
| G102916 | NA | non-coding | upstream | 21149 | 2694352 ~ 2694614 (-) |
| G102923 | mtus1 | non-coding | upstream | 35824 | 2709027 ~ 2711439 (-) |
| sh2d1aa | sh2d1a,LOC102800107 | other | downstream | 466309 | 2176867 ~ 2197918 (-) |
| insb | LOC101469513,LOC102789752 | other | downstream | 1822609 | 838946 ~ 841618 (-) |
| tmsb2 | NA | other | downstream | 2195777 | 466290 ~ 468450 (-) |
| G102276 | NA | other | downstream | 2432783 | 220592 ~ 231444 (-) |
| slc7a2 | slc7a2,LOC102301583 | other | upstream | 52257 | 2725460 ~ 2740487 (-) |
| pabir2 | LOC104944540,LOC105929195,LOC106528854 | other | upstream | 217767 | 2890970 ~ 2898545 (-) |
| LOC120567496 | NA | other | upstream | 222968 | 2896171 ~ 2896313 (-) |
| guf1 | guf1,LOC102797887 | other | upstream | 950956 | 3624159 ~ 3642640 (-) |
| G103268 | NA | other | upstream | 1229788 | 3902991 ~ 3925309 (-) |
