LOC120566426 (bscl2)


Basic Information

Item Value
gene id LOC120566426
gene name bscl2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23188036 ~ 23193053 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812883.1
CCCTGTCCAAAGGCAGCTTTAAGCAGCTAAAGTTATTGGGGAGGTTCTGTTCACAACATTTCATCCAGACAGTGTCAAGCTGTGGAGAAATAGACTTCAGGGAAAGGAGAAGTGATTTCCTAACAGTTGGCcagaaaaaactaaagGGAAATGTTGACCACAAGAACCAGATAACATTTCAGACGACATTCAAGACATTTCAACGACAGAGACTCTAGACCTTTGCCAAACTAAGACAATTTCATGGATCAAGGAAGTCATTTGCGTCCAGGAGATGATGGAGAACTTTCAGTCCTCATTGGTCAGATGTTGCTAGGGTTCCGGGATTCCTTCGTCATGGTGATGTCACGTACCCGTCAGAGAGTTATACAGGGCTTTATTGTGTTCTCTATTGTCGTCCTGCTCCTCTGGATCGCTGCCTTTTTATACGGCAGCTTCTACTACTCTTACATGCCCAAGGCGGCTTTTTCCTCGCCTGTGCACTATTACTACAGGGCAGACTGTGAATCTCCTGCCTCTTTTTTGTGCTCTTATCCAGTGGCCAACGTCTCTCTGATGAGAAATAAGAaacatGTGCTGACATTTGGCCAGGCCTATCGGATGTCTCTGCAGCTGGAGATGCCTGATTCTCCCACCAACCAGGAGCTGGGGATGTTCATGATCAAGACAACTTGTTTCTCTCGGGACGGAGGGCAAGTTGCCTCCTCTGCTCGCTCTGCAAGACCACTGCTGTCCGCCTCCAGCTCTCGCTTTAGCATGCTGCGATACCATTCAGACCTGCTGATGAACCTCAAAACGCTGCTGTTCCTCCCGGCCTTTCTGACCGGAGTCGCTGAGCAGGAACAAGTGCTGCAGGTGGAGCTCTTCTCAGACTACACCGACGACCCTTATGCCCCCTCGGTCACAGCTGTCATTGAGATCATGTCCAACAAGGTGCAGATCTACTCATCTCAGCTCTATATTCATGCTCACTTCACTGGTATAAGACACTTGTTGTTCAACTTCCCTCTCCTATCAGCCCTGGTGGGAGTGTCCAGTAACTTCATCTTCCTCAGTCTCCTCTTCGTCCTCAGCTACGTGAGGCTGCTGTTCAGAGTCGATTTGGGAGCAGAGCAGCTCAGAACAGATGGACTGCTGTCAAATAGGGACAGGAACTTGAACAACAACCAGCATGAGGATGCTGCTGCAGGTACTGCAGAGCTGATGGGTCCCCTCCAGATGACCCCCACAAATCTGAGCCAGGAGAGGACCCATCTGTAATTCGGCGACAACACAGAGGTGCAGAAACAGACAGATTCACTAGTAGATTCAAATGAATCAGAGGCAGCCTGAGGCCATTATTACAGTAAAGGAGAGGGATAAAGTGTAGAGAGTGATAACAAGCTGTAAGGATGAAGATTTAAGAGAGATACGTGGTTGAAAATGACTCAgaaaacacccacacacctcTGTTTGAGTTGTCAATCGTTTTGCTCTTACATTATGTCCTCTGTGCTGCTTTACAGTAATGTTAGgaccctatgatttattttgtgCAAAGTCCCTATTCTTAGAACTACTTGCTAGCAATGTCTTCAAAATTCTTCTTCTCATACTGTTTTCATACTATAATGCTGGCTTAACTGTTACTTTAAATGCTTAAACCAGTTTGGTACATTGATTAAAATGTGCAAGTGTGTCTCTTTCTACCATACACAAATATCTTAAATTGATTGAGTTTGAAGCCAAAATGTGTATTACTTGGCTGCAAAGTATAATTCTGTTAAACTGTTGCaataaaacctttaaaaaaca
>XM_039812884.1
CCCTGTCCAAAGGCAGCTTTAAGCAGCTAAAGTTATTGGGGAGGTTCTGTTCACAACATTTCATCCAGACAGTGTCAAGCTGTGGAGAAATAGACTTCAGGGAAAGGAGAAGTGATTTCCTAACAGTTGGCcagaaaaaactaaagGGAAATGTTGACCACAAGAACCAGATAACATTTCAGACGACATTCAAGACATTTCAACGACAGAGACTCTAGACCTTTGCCAAACTAAGACAATTTCATGGATCAAGGAAGTCATTTGCGTCCAGGAGATGATGGAGAACTTTCAGTCCTCATTGGTCAGATGTTGCTAGGGTTCCGGGATTCCTTCGTCATGGTGATGTCACGTACCCGTCAGAGAGTTATACAGGGCTTTATTGTGTTCTCTATTGTCGTCCTGCTCCTCTGGATCGCTGCCTTTTTATACGGCAGCTTCTACTACTCTTACATGCCCAAGGCGGCTTTTTCCTCGCCTGTGCACTATTACTACAGGGCAGACTGTGAATCTCCTGCCTCTTTTTTGTGCTCTTATCCAGTGGCCAACGTCTCTCTGATGAGAAATAAGAaacatGTGCTGACATTTGGCCAGGCCTATCGGATGTCTCTGCAGCTGGAGATGCCTGATTCTCCCACCAACCAGGAGCTGGGGATGTTCATGATCAAGACAACTTGTTTCTCTCGGGACGGAGGGCAAGTTGCCTCCTCTGCTCGCTCTAGCATGCTGCGATACCATTCAGACCTGCTGATGAACCTCAAAACGCTGCTGTTCCTCCCGGCCTTTCTGACCGGAGTCGCTGAGCAGGAACAAGTGCTGCAGGTGGAGCTCTTCTCAGACTACACCGACGACCCTTATGCCCCCTCGGTCACAGCTGTCATTGAGATCATGTCCAACAAGGTGCAGATCTACTCATCTCAGCTCTATATTCATGCTCACTTCACTGGTATAAGACACTTGTTGTTCAACTTCCCTCTCCTATCAGCCCTGGTGGGAGTGTCCAGTAACTTCATCTTCCTCAGTCTCCTCTTCGTCCTCAGCTACGTGAGGCTGCTGTTCAGAGTCGATTTGGGAGCAGAGCAGCTCAGAACAGATGGACTGCTGTCAAATAGGGACAGGAACTTGAACAACAACCAGCATGAGGATGCTGCTGCAGGTACTGCAGAGCTGATGGGTCCCCTCCAGATGACCCCCACAAATCTGAGCCAGGAGAGGACCCATCTGTAATTCGGCGACAACACAGAGGTGCAGAAACAGACAGATTCACTAGTAGATTCAAATGAATCAGAGGCAGCCTGAGGCCATTATTACAGTAAAGGAGAGGGATAAAGTGTAGAGAGTGATAACAAGCTGTAAGGATGAAGATTTAAGAGAGATACGTGGTTGAAAATGACTCAgaaaacacccacacacctcTGTTTGAGTTGTCAATCGTTTTGCTCTTACATTATGTCCTCTGTGCTGCTTTACAGTAATGTTAGgaccctatgatttattttgtgCAAAGTCCCTATTCTTAGAACTACTTGCTAGCAATGTCTTCAAAATTCTTCTTCTCATACTGTTTTCATACTATAATGCTGGCTTAACTGTTACTTTAAATGCTTAAACCAGTTTGGTACATTGATTAAAATGTGCAAGTGTGTCTCTTTCTACCATACACAAATATCTTAAATTGATTGAGTTTGAAGCCAAAATGTGTATTACTTGGCTGCAAAGTATAATTCTGTTAAACTGTTGCaataaaacctttaaaaaaca

Function

symbol description
bscl2 Predicted to be involved in lipid droplet organization and lipid storage. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital generalized lipodystrophy type 2; hereditary spastic paraplegia; hereditary spastic paraplegia 17; and lipodystrophy. Orthologous to human BSCL2 (BSCL2 lipid droplet biogenesis associated, seipin).

NR:

description
PREDICTED: seipin isoform X3

GO: NA

KEGG:

id description
K19365 BSCL2; seipin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812883.1 True 1794 mRNA 0.45 11 23188036 23193053
XM_039812884.1 False 1758 mRNA 0.45 10 23188036 23193053

Neighbor

gene id symbol gene type direction distance location
zbtb3 LOC105026702 coding upstream 5102 23176838 ~ 23182934 (+)
fermt3b fermt3 coding upstream 14182 23158369 ~ 23173854 (+)
ccdc88b LOC103366585 coding upstream 148598 22998526 ~ 23039438 (+)
LOC120566541 LOC102082053,LOC102202526,LOC101485142 coding upstream 200481 22979319 ~ 22987555 (+)
LOC120566913 LOC107377419,LOC103374189,LOC100712009,LOC106536320 coding upstream 238505 22942462 ~ 22949531 (+)
si:ch73-22a13.3 LOC102780362,LOC103374341,LOC102213327 coding downstream 111 23193164 ~ 23198955 (+)
nxf1a nxf1,LOC102775940 coding downstream 7562 23200615 ~ 23213933 (+)
atg2a atg2a coding downstream 22840 23215893 ~ 23237164 (+)
LOC120566542 atg2a coding downstream 45295 23238348 ~ 23243599 (+)
trmt112 trmt112,LOC102775658 coding downstream 51398 23244451 ~ 23251375 (+)
G107203 NA non-coding upstream 229456 22958158 ~ 22958580 (+)
G107185 NA non-coding upstream 231137 22919853 ~ 22956899 (+)
G107191 ganab non-coding upstream 255874 22929269 ~ 22932162 (+)
G107187 ganab non-coding upstream 261300 22925809 ~ 22926736 (+)
G107182 LOC102781801,LOC102213887,LOC101468765,LOC100701998,LOC103374192 non-coding upstream 271959 22915294 ~ 22916077 (+)
G107276 NA non-coding downstream 44198 23237251 ~ 23237450 (+)
G107334 NA non-coding downstream 77746 23270799 ~ 23271221 (+)
G107341 NA non-coding downstream 89926 23282979 ~ 23285214 (+)
G107340 NA non-coding downstream 92310 23285363 ~ 23287678 (+)
G107353 stx5 non-coding downstream 126339 23319392 ~ 23320649 (+)
flrt1b LOC103374305,LOC102200053 other upstream 55351 23100025 ~ 23132685 (+)
rom1b rom1,LOC102779683 other upstream 190998 22950595 ~ 22997038 (+)
G107168 NA other upstream 214275 22954972 ~ 22973761 (+)
ubxn1 ubxn1,LOC103374193 other upstream 278474 22903755 ~ 22909562 (+)
G107163 LOC103356264 other upstream 322360 22862190 ~ 22865676 (+)
tgfb5 LOC104925539,LOC103374198,LOC102800105,LOC105920438,LOC102314494,LOC101466107,LOC100690458 other downstream 59702 23252755 ~ 23262261 (+)
G107333 NA other downstream 75738 23268791 ~ 23270216 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other downstream 261487 23454540 ~ 23466205 (+)
LOC120566905 LOC104953971 other downstream 295232 23488285 ~ 23492538 (+)
G107386 cfl1 other downstream 299791 23492844 ~ 23494989 (+)

Expression


Co-expression Network