ctnna1 (ctnna1)


Basic Information

Item Value
gene id ctnna1
gene name ctnna1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15441419 ~ 15516760 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812894.1
GTCAATGCGGCAGGCTTCTGGAGAATTTGCAGAAGACCCCTGCTCATCTGTGAAGAGGGGCAATATGGTTCGAGCTGCCAGAGCCCTCCTGTCGGCAGTCACACATCTGCTGGTGCTGGCAGACATGTCTGATGTCTACAAACTTCTACTGCAGCTTAAACTGGTGGAGGAAAATCTTGTGAAAGTGCGCAATGCAGGAACAGAGCAGGACCTTGGGATCCAGTATAAGGCCTTGAAACCAGAGGTGGACAAGTTGAACATGATGGCTGCCAAGAGACAGCAGGAGCTGAAGGACGTCCACCACAAGGACCAAATGGCTGCTGCTCGCGGGGTGCTACAGAGGAACATCCCCATGCTGTACACAGCGTCTCGTGCCTGCCTCCAGCACCCTGACGTGGCAGCCTATAAGGCTAACCGTGACCTGATCTACAAGCAGCTGCAGCATGCAGTCTCCGGCATCTCCAACGCCGCTCAGGCCACTGCCACGGAGGACTCAGCTCTCAGTCAGCCAGCAGGGGGTGGAGAGCTTGCCTATGCCCTCAACAATTTTGATAAACAAATCATTGTGGACCCGTTGGCGTTTAGTGAGGAGCGCTTCCGTCCTTCCCTGGAGGAGCGTCTTGAGAGCATTATCAGTGGTGCTGCCCTCATGGCCGACTCTTCTTGCACACGTGATGACCGCAGGGAGCGCATTGTGGCAGAATGCAATTCTGTGCGCCAGGCTCTTCAGGACCTTCTGTCGGAGTATATGGGCAATgCTGGAAGGAAGGACAGGAGTGATGCTCTGAACACAGCCATCGACAGGATGACGAAGAAGACCAGAGACCTTCGCAGACAGCTGCGTAAAGCTGTGATGGACCATGTCTCTGACTCTTTCCTGGAGACCAATGTTCCTCTCCTGGTCTTGATTGAAGCTGCCAAGAATGGCAACGAGAAAGAAGTCAAGGAATATGCACAGGTGTTCCGTGAGCACGCCAACAAGCTTATCGAGGTGGCCAACCTGGCATGTTCCATCTCCAACAATGAAGAGGGAGTGAAGCTGGTCCGCATGGCGGCATCTCAACTGGAAACTCTTTGCCCCCAGGTGATTAATGCAGCGTTAGCCCTTGCTGCCAAACCCAACAGTAAGGTGGCCCAGGACAATATGGATTTGTTCAAGGAGCAGTGGGAGAAGCAGGTCCGCATCCTCACCGATGCCGTTGATGACATAACATCCATTGATGACTTCCTTTGTGTGTCTGAGAACCACATCCTGGAGGATGTGAATAAGTGTGTCATCGCTCTGCAGGAGAAAGATGTTGATGGTTTGGATCGCACTGCTGGGGCTATTCGAGGCCGTGCTGCCAGAGTCGTCCATGTGGTCACCTCTGAAATggacaattatgaacctggaaTCTACACAGAGAAAGTCTTGGAGGCCACCAAGCTCCTCACTGACACAGTCATGCCACGGTTCACAGAGCAAGTTGAGTCTGCAGTGGAGGCCTTGAGTGCCAACCCCTCACTACCTGTGGATGAGAATGAGTTCATTGACGCATCCCGTCTTGTATATGATGGCATTCGCGACATTCGCAAGGCTGTCCTCATGATCAGAACTCCAGAGGAGTTGGACGACTCTGACTTTGAGACTGAAGACTTTGATGTTCGCAGCAGGACCAGCGTGCAGACAGAGGATGACCAGCTTATTGCCGGCCAGAGTGCACGGGCTATCATGGCCCAGTTGCCCCAGGAGCAGAAGGCGAAGATTGCTGAACAGGTGGCTAGCTTTCAGGAAGAGAAGAGCAAGCTGGATGCTGAGGTATCCAAGTGGGATGACAGCGGCAATGACATCATTGTGTTGGCTAAGCAGATGTGCATGATCATGATGGAGATGACAGACTTCACCAGGGGCAAAGGGCCACTGAAGAATACGTCTGATGTCATCAGCGCTGCCAAGAAAATTGCAGAGGCAGGATCACGAATGGACAAGCTGGGCCGCACCATCGCTGACAACTGCCCTGACTCTACCTGTAAGCAGGACCTGCTCGCCTACCTGCAGCGTATTGCCTTGTATTGCCACCAGCTCAACATCTGCAGCAAAGTCAAGGCCGAGGTGCAGAACCTGGGAGGAGAGCTGGTTGTCTCTGGGTTGGACAGCGCCATGTCCCTTATTCAGGCTGCAAAGAACCTGATGAACACAGTGGTGTCCACCGTCAAGGCCTCCTACGTTGCGTCTACTAAGTAccagaagagcaaaaacatggAGTCCCTTAACATGCCAGCTATCTCGTGGAGGATGAAAGCGCCTGAGAAGAAGCCTCTGGtgaagagagagaagcaggaTGACGGCCAGACCAACCGGGTCAAGAGATCCTCTCAGAAGAAGCACATCAACCCTGTGCAGGCTCTGAGCGAGTTTAAAGCCATGGATAGCATCTAG

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

NR:

description
PREDICTED: catenin alpha-1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0005938 cell cortex cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K05691 CTNNA; catenin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812894.1 True 2419 mRNA 0.53 15 15441419 15516760

Neighbor

gene id symbol gene type direction distance location
sncb sncb coding downstream 291490 15135126 ~ 15149929 (-)
LOC120567479 NA coding downstream 309265 15127898 ~ 15132154 (-)
nek12 NA coding downstream 388169 15050136 ~ 15053250 (-)
drd1a drd1,LOC103470866,LOC103144507,LOC106953475 coding downstream 409151 15028908 ~ 15032268 (-)
nkx2.5 nkx2-5 coding downstream 540129 14898308 ~ 14901290 (-)
LOC120566876 LOC104959829 coding upstream 104254 15621014 ~ 15638360 (-)
dctn4 dctn4 coding upstream 154875 15671635 ~ 15688818 (-)
tnip1 tnip1,LOC103376067 coding upstream 181577 15698337 ~ 15715960 (-)
anxa6 anxa6,LOC102795126 coding upstream 200481 15717241 ~ 15729319 (-)
rmnd5b rmnd5b,LOC103391242 coding upstream 267042 15783802 ~ 15791552 (-)
LOC120567002 NA non-coding downstream 4486 15205133 ~ 15436933 (-)
G105113 NA non-coding downstream 77478 15363636 ~ 15363941 (-)
G105110 NA non-coding downstream 110280 15330925 ~ 15331139 (-)
G105096 NA non-coding downstream 166496 15274555 ~ 15274923 (-)
G105049 NA non-coding downstream 412553 15028350 ~ 15028866 (-)
G105147 NA non-coding upstream 10306 15527066 ~ 15529259 (-)
G105149 NA non-coding upstream 53058 15569818 ~ 15570080 (-)
G105217 LOC103376071,LOC104959352 non-coding upstream 234694 15751454 ~ 15755017 (-)
G105230 NA non-coding upstream 311531 15828291 ~ 15828491 (-)
G105241 NA non-coding upstream 363603 15880363 ~ 15889068 (-)
G105086 NA other downstream 306683 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 332821 15089404 ~ 15108598 (-)
LOC120567441 LOC100697283,LOC102197909,LOC102314576 other downstream 701926 14735192 ~ 14739493 (-)
uvssa uvssa,LOC104961899,LOC106533076 other downstream 867926 14537100 ~ 14573493 (-)
G104837 NA other downstream 1185378 14150492 ~ 14256041 (-)
tspan17 tspan17,LOC103361971 other upstream 81583 15598343 ~ 15619108 (-)
hnrnph1 hnrnph1,LOC102791917 other upstream 349300 15866060 ~ 15871949 (-)
unc5a unc5a,LOC102788949 other upstream 443437 15960197 ~ 16103794 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 1007596 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 1440883 16957643 ~ 16963536 (-)

Expression


Co-expression Network