LOC120566441 (LOC100707887)


Basic Information

Item Value
gene id LOC120566441
gene name LOC100707887
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19432316 ~ 19435195 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812909.1
TGGCGGCGGGGTTGTTTTATACTGAGGGTTGAGACAACAAATGATGGAGGCGTCGACAGTGGGGGCTAAACCAAACCGGGTTGGCTGTGTGAGCGCTCTGAATCAGTAGCATTCAtaataacaatgaaaaaaaactacaatttTGGTTATTATATTTAAGTTAGTAGGAGAAGAACCGTTGTGCGGAATCAGATATCCGGCTGTTCTCGGAGACAAAGCTTGAAACCGCGTCGCATCCTTCCGTGTTATTGTCGGACCGGGCCCGCCCATACTCCAGAGCATCAGTAGGAAACCTATTACCCGGTTATACAAAACAGACAATACACCACACATCACACCGGAGGCAGGCTTCTTTGAAATGCCAGGGTCCAGCCAGCCTGATGTGGATAACGAGGAGACAGCGCTTCATTGTGCCATTGAATTGCCAATAGCGCCACGGATGCTACAAAATAACCAACTGTAATATTAGATACCGACAAATCCCACCGCCTATTATGGACTTCCCAGGTCATTTCCAGCATATTTTCAAGCAGCTCAACCACCAGCGCCTCCATGCTcagctgtgtgactgtgtggtgGTGGTTGGAGGCCAGAGCTTCCAGGCTCACCGTTCCATCCTGGCAGCATGCAGCTCCCACTTCAGAGCTCTCCTGAGCTCCAGTGACAGCGGTGATGAGGTTGGAGGACCGGGAGCAGACATAGGTGGAGGTGGGGGCCCCAGTGTGATTGAGCTAGATCCAGAGGTGGTGACCCCAGAGGCCTTCTCAACCTTGCTGGACATGATTTACACCTCCACCCTCTCTCCAGGGGCCTCCAATGTGATGGATGTGCTGCTGGCGGCATCACACCTGCACCTTAACACTGTTGTGAAGGCCTGCAAGCTCCACCTGTCCAGGAAAAACTTTCCTGCCTCGCCCCCAAAAGGCTGGAGGTCAgtgcaacaacagcaacagggTCAATCGTCCGGGGCGGAGAGGCCGGCCTTGCTTCAACAGGTCACATCTGTCATGGAGGAGGACGTCGATGAGGAAGACGTGGTAGTGGAGGTTAGTCAGTCTGGTGGGGTTGAAGAGCAGGgggtgaggaggagggaagTCAGTGGGGAGCAGAGTGCTGCACAGTTTTTGAGGCACAAGAGGAAGTCAAATGAGGACAGGCTCAGTGGCAGAAAGAGGCCCTGCAGGCTGCCTGAGGGAAACTATAAGGAGTGTTCATCTACTGTAGCCAGAAGCGCCGTCAGTACAGAGGAGGGTGGAGAGGAGCTGCTGTCCCCGGACTGCCTGAAGACGACCGACGGACTCTGGGTGAGCCGAGGCGAGGACGAGGTGGAAAAGAAATACGAAGCAACCAAGGGAGAGTCCGAAGAGATCCAGCTGCCGAGCCAATCAGACAGCAGCGCAGGAGGTGTAGGTGCGTGGGAGAAGGGCGGAGATCCAGATGAAGACACTGTGGTCAAAGTAAAGGTGGGAGAAgaaggggaggaagagggagaggagccaAAGATGGCGATGGTTGAGGTGAAAAAGGAAAATCTGAGCTCATACTCCCCAGATTTACCAAACAATTCTCTATCTCCACCACAAGACTGCACAGACAATTTGGATGCTCAACTAAATGAAGAGAAAATGGCCACAGCCTGCCCAACAGAGGGTGATGTTAGCTCTTTGCAATCACAGCTGTGCACAGATGTACAAACTGATGCACAGAGAGAGGCTGGAGATTTGGGTGAGGAGTCAGTAGACTGCGAAGGCCTTGACAGCCTGTCAGAGCTTGCTTTCTCCTGCTTCCTCAATCCCAGCAGTGAGAGTGTAATGGGAGctttggaggaagaagacagCCTAGCTAGcctcactgctgctgctactgctgctgccgctgctgccaGTGATGCTCCTGCAGCTGCTGGAGATCCTGGCCAACTGTATCAAAACTCAGGAGAAGCCTCTTCTGCTCACTCCTCTGATTCCTCACTAGTTTTTCCAGTAACATCTGTCCCCTTGCAGCAGCTTCTCCCAACTCAGGGCCCTGGTTTCAGTGACACACTCATCCTCCAGCCCACCCAGAACTCTTTAGCAGGTTTCCTGAGTGGCATCAGACCAGGCCTCGGTCTGGAAACCTCCCTCATCCAACCCCCCAGGGCCGGGAAAAGTTCAGGGGCAACGACCTTCCGTCGGATCGCCCCCAAAGTGCCGCCTGGATCAGATCAGTCCTCTTCTTCATCGGCGGGGGATGCTGCCGAACGGCCGTCTCTAACCAGAGCTTCAGAGGATGTTATGTCCAAGTGCAAGAAAGCAGCTGCTGAAGACCATGTTCTGTTGGTGGAAGGGGAGAAGAAATACGCCTGCAAAATCTGCTGTAAGACCTTCATGAACCTGACTGACTGTAAGAAACATATTCgcgtccacacaggagaaaagccCTACCCCTGTCCAAAGTGTGGCAAACGCTTCAGCCAGTCCTCCCACCTGTATAAGCACTCAAAAAACACCTGCCTGCACTGGAAAGACGATCAGTTATTCCCAGATACCCTGCTGTGACCTCCATTTACCTGAAAGGCGCTTGTTGAGTCGCACAACTCAACACAattctttgaaaaaaatgcactCTGTAAACTTGATTATTTATTAGCCCATACACTTCCTGAATCAATTTTGGCTTTATGTTACATGAATTCAAAGTCAATAAGCTCATGTAATTGTTATGCTTTTTCATGTTCTCAACCATGTGGTGATTTTAAGAAATCAAATTCATGAAATGAAACGGATACAATTTTGCCAAACTGATGTGAATGCACTGAAAATATTCTCTTGTTTTTTTGACTGCTGTGTAAGAGGGATGAGAATAAATTATGCTTACTAGTTTTTATTGATcttaaattga

Function

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812909.1 True 2880 mRNA 0.51 1 19432316 19435195

Neighbor

gene id symbol gene type direction distance location
si:ch211-203d1.3 ssh3 coding downstream 5454 19414668 ~ 19426862 (-)
LOC120567397 NA coding downstream 47344 19376204 ~ 19384972 (-)
LOC120567398 NA coding downstream 58333 19365820 ~ 19373983 (-)
aldob aldob coding downstream 97618 19331706 ~ 19334698 (-)
arsia arsi,LOC104927051 coding downstream 127251 19301805 ~ 19305065 (-)
slc25a51b slc25a51 coding upstream 29276 19464471 ~ 19469408 (-)
LOC120566455 LOC100699740 coding upstream 93227 19528422 ~ 19569097 (-)
dele1 kiaa0141 coding upstream 134340 19569535 ~ 19577846 (-)
spock1 spock1,LOC102785053 coding upstream 163166 19598361 ~ 19698769 (-)
LOC120566528 NA coding upstream 288307 19723502 ~ 19727291 (-)
G106276 NA non-coding downstream 36322 19394810 ~ 19395994 (-)
G106248 NA non-coding downstream 111010 19320263 ~ 19321306 (-)
G106243 NA non-coding downstream 117900 19312809 ~ 19314416 (-)
LOC120566721 LOC102291516,LOC101487913,LOC102195901 non-coding downstream 143847 19287076 ~ 19288469 (-)
LOC120566720 NA non-coding downstream 166840 19262913 ~ 19265476 (-)
G106303 NA non-coding upstream 41973 19477168 ~ 19557572 (-)
G106349 NA non-coding upstream 421901 19857096 ~ 19857367 (-)
G106378 LOC108242387 non-coding upstream 510460 19945655 ~ 20052690 (-)
G106367 NA non-coding upstream 526759 19961954 ~ 20007579 (-)
G106375 NA non-coding upstream 604902 20040097 ~ 20055141 (-)
LOC120566717 LOC102215832 other downstream 181880 19215989 ~ 19250436 (-)
rgs14b rgs14 other downstream 387365 19017752 ~ 19044951 (-)
LOC120566257 NA other downstream 740906 18687788 ~ 18691410 (-)
reep2 reep2,LOC102782871 other downstream 1117901 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 1363824 18067425 ~ 18068492 (-)
tomm5 NA other upstream 644 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 42735 19477930 ~ 19482625 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other upstream 536638 19971833 ~ 19981633 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other upstream 795713 20230908 ~ 20233924 (-)
LOC120566885 ppp2r2c other upstream 1640562 21075757 ~ 21110067 (-)

Expression


Co-expression Network