si:ch211-203d1.3 (ssh3)


Basic Information

Item Value
gene id si:ch211-203d1.3
gene name ssh3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19414668 ~ 19426862 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812910.1
TGTTCGGTGTTGACTGATGTGTCCTCCACTGGGGCAGCCTGAGCCGCTGCGCTGTAAATGGTGAAGTCTTTACCCTCGAAAGCGACAGAGGGCGGAATAAGGAGCACTCTGTACTTGAGGAACAGACAAGCAACCTTCAAAGCAGGAAATTCGAGTGGACCCAGTCTGGAAAAGAAGAAAATACCACTATTTGCCCGCCCACGGCACACTTTTGGCTGAGGAACCTGCAGTGCCTGTCTGAGCCTGCCCGCAACAGCAGGTTTAGTGGAGACAGATCTGTACTCTGCAATGGCTCTGTTGACCCTGCATAGACTCCCATCCATCTCCACTGCTCCAgatgaaAGCCTCCAAAGAAGAGGGAGACTTCAGAAAAGGGAGAGCTTTGCCCTCGTGAAGGGGGCGGCCCTTCTGCTGGAAGAAGGCAAGGGCGGGGGCCTCGATGAGGGGGCTCCACCTTCTTCTGTGAAAGAAGGCGGTGGAGCTCCACAGCACAGACAACTTCATGCCATGGTTGAACAGCTCCGACCAGAAGATACCATCAAGCTGGCGGTGCAGTTGGAGTCCATCAGCTCGGTCAGAGTCAGGTATCTGATCATTGTCTCCACCCTCGGCAAAAAACACGAGAGCATCCTACTGGGCATGGATTTCCCCAACTCACGGAGTGATCAGTGCACCATCGGCCTGGTTCTGCCAGTATGGAGCGACACCCAGGTGTATCTGGACGGAGACGGTGGTTTTAGCGTTACGACAGCTGAAGAGATCAGAATTTTTAAGCCTGTTTCTATGCAGACCATGTGGTCAGTGCTGCAGGCGTTGCACGGCTGCTGCGAGCGGGCAGTCAAGGCAGCAGTGATTCCAGGCAACGGCCTGGAGTGGGCCCAGCACTACCACCAGCACATCGAGTCAGACCGCTTCTGCCTCAACGAGTGGGAAGCTATGAACGACCTGGAGTCGGTCCGCAGGGACAGTAATGGACAGAGCTCGGCAGACCGCATTTCCAACGAGGTGCTGATCAAAGAGCATCTGAGAGACATCATGAGGACTGAAGACCTGGACAATCTCACATCTAAAATGGTGCACTCTGCCCTGGAGACCAGGATAGGCTTCGACATGAGACCCTTTAAGGAGTACATTGACAACGAGATCCTGGTCACTATGGCTCAGATGGACAAACCTTCCAAAATATTTGATTACCTTTACCTGGGCTCTGAGTGGAACGCAGCTAACTTTGAGGagctgaagaaaaacaaTGTGGGCTATATTCTGAATGTGACCAGGGAGATTGACAACTTTTTCCCAGAGTCCTTCACTTATATGAACATCAGAGTGTACGATGTGGAAGCCACCGACCTGCTCTCTCACTGGACAGACACCTACAACTTCATCAACACTGCAAGGAAAAGTGGACAGGCCGTGTTGGTGCACTGTAAGATGGGCGTTTCTCGCTCGGCATCCACGGTGATCTCCTACGCCATGAAGCAGCAGCACTGGTCACTGGATATGGCGTTGTCCTACGTTAGGAGTTGCCGGTCCATCGTCAAGCCCAACGAAGGCTTCATGAAGCAGCTGCACACCTACAGCGGCATCCTCAATGCAAGCCAGCAGCGTCACAGCGCACTCTGGAGGCGAAAGTCGAGAGACCAGAGACAAAAATCAGTATgcaaggaggagggaggggagaaaagaaagccagcagaggaagaggaggaggatgatgatgatgaagatgatgattaTGAGGGACTTGATGATTATGAGCCGGGTGATGAGGAGGATTTAGAGAGTCTAGATGAAAAAGATCTGGGTAGCCCAGATGAAATAGAAGATCCAGAGGAACACACAGAGGTGTTTGAAGAGCCCCCCCCACAGTCTGAGAACAACCAGTGGCCGGGGCAGACAGGACCACCAGATGCCTGTCCTACTATCACAGTAAATGAACCAGACAAGGTTGCCACTCTGAGTGCTAATCGCAGTGGCAGGATGAACCTCTTCTCCCTCATGCAGTCCATCAGCGAGGAGGATAAAGGACGTGAACAGCTGCTCGGCAGTCCGAGGGAGTCTCCTGGGCAGCGGAGGCGTAGCCAAGGCCGACGGGGTCTGATTCACCAGAGGGCGTGTGTGGATGTCTCACCTGAACCACGAAGCCTGCCAGACACCGGTCAAAGCAAACCCTAAAGTGATCAAAGAGACGGAAGAGCACagacaggagggagggggaCCCATTAAGTAGGAATTCTATGGTGGGGAGAAATAATCCTGAAAACACCTGAAGGAAAGTGTGCGCTGGTAATATATATTCCAAGGTTTTCATACAATGATACACTCTAACTTTATATTTGACATATTTAGATGATGAACGTTTTTAATTTATGTTTCATTGCATATCTCTGTTGACAATTATTACTGCAGATGGTTCACTGTTGTTAAAAGGATCTTGCTGTAGAGCCAGTGTATCTGAAGGCTGAAGTCATTATCAGTGTACATTTGTAGTATtatgtttatcagtgttttagaGTCACATACAGAAGTACTGGTCTCTCCCTCCTCGTTCCCTCTCCCCTTCTTCAGCTCTTGCGTCATCACTCCAGAGATGATGTCTATGCAAttactgttttcttttcttttttttccctctgtatACGAGTACGCTGCCAATCCGAGGTAGAcggttttaaatgtttttcatattCTCTCTCATTGGAAGTGTTTTTCACAAGACGTTCGTTGTTGACTGATGGGAGGGTTTCACTGTATGTAAGCTGTGCATCATGGACCAAGTCAGGGCCAGTTTTATGGCACTAGCCTGTTCCTATTCCAATGTGCCAATGAGTATATTACACAGAAAATCTTTTATCATGTCAGTATGTTAAGAACCAAAGTCTccaattttagtttttattcatTCTATTTAAACACCAGGGCTGCATGAGTGCCTTGTACCTGAGAATGAAATACGACTCTATgactggtgttttttttagtgtttttgcTACGCGGTGGTGGCTGCATAATGTATGTATGAATCTTGTACTTTTTCTCTAATTGCAGTACAAATGTGACTCCCCGAAGTGttgcgatatatatatatat
>XM_039812911.1
CACACTTTTGGCTGAGGAACCTGCAGTGCCTGTCTGAGCCTGCCCGCAACAGCAGGTTTAGTGGAGACAGATCTGTACTCTGCAATGGCTCTGTTGACCCTGCATAGACTCCCATCCATCTCCACTGCTCCATTGCGTAACAGgatgaaAGCCTCCAAAGAAGAGGGAGACTTCAGAAAAGGGAGAGCTTTGCCCTCGTGAAGGGGGCGGCCCTTCTGCTGGAAGAAGGCAAGGGCGGGGGCCTCGATGAGGGGGCTCCACCTTCTTCTGTGAAAGAAGGCGGTGGAGCTCCACAGCACAGACAACTTCATGCCATGGTTGAACAGCTCCGACCAGAAGATACCATCAAGCTGGCGGTGCAGTTGGAGTCCATCAGCTCGGTCAGAGTCAGGTATCTGATCATTGTCTCCACCCTCGGCAAAAAACACGAGAGCATCCTACTGGGCATGGATTTCCCCAACTCACGGAGTGATCAGTGCACCATCGGCCTGGTTCTGCCAGTATGGAGCGACACCCAGGTGTATCTGGACGGAGACGGTGGTTTTAGCGTTACGACAGCTGAAGAGATCAGAATTTTTAAGCCTGTTTCTATGCAGACCATGTGGTCAGTGCTGCAGGCGTTGCACGGCTGCTGCGAGCGGGCAGTCAAGGCAGCAGTGATTCCAGGCAACGGCCTGGAGTGGGCCCAGCACTACCACCAGCACATCGAGTCAGACCGCTTCTGCCTCAACGAGTGGGAAGCTATGAACGACCTGGAGTCGGTCCGCAGGGACAGTAATGGACAGAGCTCGGCAGACCGCATTTCCAACGAGGTGCTGATCAAAGAGCATCTGAGAGACATCATGAGGACTGAAGACCTGGACAATCTCACATCTAAAATGGTGCACTCTGCCCTGGAGACCAGGATAGGCTTCGACATGAGACCCTTTAAGGAGTACATTGACAACGAGATCCTGGTCACTATGGCTCAGATGGACAAACCTTCCAAAATATTTGATTACCTTTACCTGGGCTCTGAGTGGAACGCAGCTAACTTTGAGGagctgaagaaaaacaaTGTGGGCTATATTCTGAATGTGACCAGGGAGATTGACAACTTTTTCCCAGAGTCCTTCACTTATATGAACATCAGAGTGTACGATGTGGAAGCCACCGACCTGCTCTCTCACTGGACAGACACCTACAACTTCATCAACACTGCAAGGAAAAGTGGACAGGCCGTGTTGGTGCACTGTAAGATGGGCGTTTCTCGCTCGGCATCCACGGTGATCTCCTACGCCATGAAGCAGCAGCACTGGTCACTGGATATGGCGTTGTCCTACGTTAGGAGTTGCCGGTCCATCGTCAAGCCCAACGAAGGCTTCATGAAGCAGCTGCACACCTACAGCGGCATCCTCAATGCAAGCCAGCAGCGTCACAGCGCACTCTGGAGGCGAAAGTCGAGAGACCAGAGACAAAAATCAGTATgcaaggaggagggaggggagaaaagaaagccagcagaggaagaggaggaggatgatgatgatgaagatgatgattaTGAGGGACTTGATGATTATGAGCCGGGTGATGAGGAGGATTTAGAGAGTCTAGATGAAAAAGATCTGGGTAGCCCAGATGAAATAGAAGATCCAGAGGAACACACAGAGGTGTTTGAAGAGCCCCCCCCACAGTCTGAGAACAACCAGTGGCCGGGGCAGACAGGACCACCAGATGCCTGTCCTACTATCACAGTAAATGAACCAGACAAGGTTGCCACTCTGAGTGCTAATCGCAGTGGCAGGATGAACCTCTTCTCCCTCATGCAGTCCATCAGCGAGGAGGATAAAGGACGTGAACAGCTGCTCGGCAGTCCGAGGGAGTCTCCTGGGCAGCGGAGGCGTAGCCAAGGCCGACGGGGTCTGATTCACCAGAGGGCGTGTGTGGATGTCTCACCTGAACCACGAAGCCTGCCAGACACCGGTCAAAGCAAACCCTAAAGTGATCAAAGAGACGGAAGAGCACagacaggagggagggggaCCCATTAAGTAGGAATTCTATGGTGGGGAGAAATAATCCTGAAAACACCTGAAGGAAAGTGTGCGCTGGTAATATATATTCCAAGGTTTTCATACAATGATACACTCTAACTTTATATTTGACATATTTAGATGATGAACGTTTTTAATTTATGTTTCATTGCATATCTCTGTTGACAATTATTACTGCAGATGGTTCACTGTTGTTAAAAGGATCTTGCTGTAGAGCCAGTGTATCTGAAGGCTGAAGTCATTATCAGTGTACATTTGTAGTATtatgtttatcagtgttttagaGTCACATACAGAAGTACTGGTCTCTCCCTCCTCGTTCCCTCTCCCCTTCTTCAGCTCTTGCGTCATCACTCCAGAGATGATGTCTATGCAAttactgttttcttttcttttttttccctctgtatACGAGTACGCTGCCAATCCGAGGTAGAcggttttaaatgtttttcatattCTCTCTCATTGGAAGTGTTTTTCACAAGACGTTCGTTGTTGACTGATGGGAGGGTTTCACTGTATGTAAGCTGTGCATCATGGACCAAGTCAGGGCCAGTTTTATGGCACTAGCCTGTTCCTATTCCAATGTGCCAATGAGTATATTACACAGAAAATCTTTTATCATGTCAGTATGTTAAGAACCAAAGTCTccaattttagtttttattcatTCTATTTAAACACCAGGGCTGCATGAGTGCCTTGTACCTGAGAATGAAATACGACTCTATgactggtgttttttttagtgtttttgcTACGCGGTGGTGGCTGCATAATGTATGTATGAATCTTGTACTTTTTCTCTAATTGCAGTACAAATGTGACTCCCCGAAGTGttgcgatatatatatatat

Function

symbol description
ssh3 Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to be located in cytoskeleton and nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: protein phosphatase Slingshot homolog 3, partial

GO: NA

KEGG:

id description
K05766 SSH; protein phosphatase slingshot

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812910.1 True 3090 mRNA 0.49 17 19414668 19426862
XM_039812911.1 False 2897 mRNA 0.49 17 19414668 19425632

Neighbor

gene id symbol gene type direction distance location
LOC120567397 NA coding downstream 29696 19376204 ~ 19384972 (-)
LOC120567398 NA coding downstream 40685 19365820 ~ 19373983 (-)
aldob aldob coding downstream 79970 19331706 ~ 19334698 (-)
arsia arsi,LOC104927051 coding downstream 109603 19301805 ~ 19305065 (-)
LOC120566716 LOC102215832 coding downstream 131994 19277131 ~ 19282674 (-)
LOC120566441 LOC100707887 coding upstream 5454 19432316 ~ 19435195 (-)
slc25a51b slc25a51 coding upstream 37609 19464471 ~ 19469408 (-)
LOC120566455 LOC100699740 coding upstream 101560 19528422 ~ 19569097 (-)
dele1 kiaa0141 coding upstream 142673 19569535 ~ 19577846 (-)
spock1 spock1,LOC102785053 coding upstream 171499 19598361 ~ 19698769 (-)
G106276 NA non-coding downstream 18674 19394810 ~ 19395994 (-)
G106248 NA non-coding downstream 93362 19320263 ~ 19321306 (-)
G106243 NA non-coding downstream 100252 19312809 ~ 19314416 (-)
LOC120566721 LOC102291516,LOC101487913,LOC102195901 non-coding downstream 126199 19287076 ~ 19288469 (-)
LOC120566720 NA non-coding downstream 149192 19262913 ~ 19265476 (-)
G106303 NA non-coding upstream 50306 19477168 ~ 19557572 (-)
G106349 NA non-coding upstream 430234 19857096 ~ 19857367 (-)
G106378 LOC108242387 non-coding upstream 518793 19945655 ~ 20052690 (-)
G106367 NA non-coding upstream 535092 19961954 ~ 20007579 (-)
G106375 NA non-coding upstream 613235 20040097 ~ 20055141 (-)
LOC120566717 LOC102215832 other downstream 164232 19215989 ~ 19250436 (-)
rgs14b rgs14 other downstream 369717 19017752 ~ 19044951 (-)
LOC120566257 NA other downstream 723258 18687788 ~ 18691410 (-)
reep2 reep2,LOC102782871 other downstream 1100253 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 1346176 18067425 ~ 18068492 (-)
tomm5 NA other upstream 8977 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 51068 19477930 ~ 19482625 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other upstream 544971 19971833 ~ 19981633 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other upstream 804046 20230908 ~ 20233924 (-)
LOC120566885 ppp2r2c other upstream 1648895 21075757 ~ 21110067 (-)

Expression


Co-expression Network