rmnd5b (rmnd5b,LOC103391242)


Basic Information

Item Value
gene id rmnd5b
gene name rmnd5b,LOC103391242
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15783802 ~ 15791552 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812949.1
TTAAGGCAGAATGCGACACAGGAAGATCCGCATTACGACTGCTGGTGAAGTGTTGCCATAACAGGCAAGTGGCTAACGCTAATGTTTGCTAACTAATTAGCAGGATAGgtgttgttgttttgtgtgtgagtgttccAGTCCGAACCATGGAACAGTGCGCGTGTGTTGAGCGGGAGCTGGAGAAAGTGCTTCATCGCTTTGTAATGTACGGCCACCAGTCTGAGGAGAGGCTAGACGAGCTCCTGCACAGTGTCTGTGAGATACGAGGACAGCTAGTTGCTTTTGGAGTACAAGATGCAGACTTATCAGTCCTATCCCAGACTATGGCACAGTGTTGTAAGAATATCAAAgaaacagttcagatgctagcCTCCCGACATAAGGACATCCATGGCAGTGTGTCAAAAGTGGGCAAAGCCATTGACAGGAATTTTGATGCAGAGATCAGTGCCGTGGTGGCAGAGACGGTGTGGGACACcccagagagacagaaataccTGAGTGAGACCATTGTGGAACACCTGTACAGACAAGGCATGCTCAGTGTAGCAGAGGACCTTTGTCAGgagtctggtgtagttatAGATATGAGTATGAAGCAGCCTTTCCTGGAGCTGAACAGAATCCTTGAAGCTCTGAGGATGCAGGACCTCAGGCCGGCACTAGAGTGGGCTGTGACGAATCGGCAGCGCCTTTTGGACCTGAACAGCAGTCTAGAGTTCAAGTTGCACCGCTTGTACTTCATCAGCCTGCTCAGTGGGGGAATCGGCAACCAAATGGAGGCCCTGCAGTATGCCAGGCACTTCCAGCCCTTCGCCTCTCAGCACCAGAGAGATATTCAGATTCTGATGGGTAGTCTGGTGTACCTGCGTCATGGCATTGATAACTCTCCGTACCGCAGTCTGCTGGAGACAAATCAGTGGGCCGAGATCTGTAACATCTTCACCAGGGACGCCTGCGCTTTACTGGGTCTCTCTGTAGAGTCTCCACTCAGTGTTAGTTTTGCATCAGGCTGTATGGCCTTGCCAGTGCTGATGAACATCAAGCAGGTGATCGAGCAGAGACAGTGCAGCGGAGTCTGGACGCACAAAGATGAGCTGCCTATTGAAATCGACCTCGGGAAGAAGTGCTGGTACCACTCTGTGTTTGCCTGCCCGATCCTCAGGCAGCAGACCTCAGAGAGCAATCCTCCCATGAAGCTCATCTGTGGCCACGTCATCTCCAGAGATGCCCTCAACAAACTGACTAATGCTGGAAAgttgaaatgtccgtacTGCCCCATGGAGCAGAATCCGTCACATGCCAAGCAGATCTACTTTTGATACCGCACACTTTCTTCATGAGTAAGGATGAAGTTCCCTGGAGCTCTTTGCATTTCCAGGACCATTTGCTCTGGCCCTTTTTCCTCTGTCCCTGGCCTCTTGGCCTGTTATTGTAAGCATTAAGGTTTTATCCCAGTGCTCCTTTGGACAGCCTTGGCCATCCCGTAACCCACCTCGGACCCTCCAACTTTGCGTAGTATACAGAGTCCAGCGAGGATGGTCCAACTACAGCCTGTAGTAGAGTGAGGAGTCTGTCAGTAATGAGAACATCCTCACGAAGAAGCACCTCTTAAAAAGGTTCATTCATTGAAACTCATTTGCAAATGCCTGCAGAGTTATAGGCGTatctttttaaagtaagtaataCTTTATAGTTTTTCTCTGCTTTATCGACTGAGTTGGATgactgcttctttttttctttttttcccctctttttttttttttgtgaatgaagcAGTTGAATGATTATGGATGGGTGAGTGTGGGTAAATGGTATAGATAGGCAGTTTCTGATTTCAGAATGGTAATAAACTTCTATTATACATGAGGAAAAACCACAGGAAAACAAATTGTGATGAAGGTTTATTATTTGCTGGTGAAGGGAACTGTGGAGGTCTCTCTTGAATTGAACTCTTGATTGTGACCCATTGCTCCTCCATAATGTAATAAAGGCCTCACGTAGCTTGAAAGTCACTGTTGGCTGATGTATCTGTTTGACCAGTAAAACAATTAACTCACAATGGTGGAACAGCATTTTTATTtcctcctttatttttttttttttaaaatttttttgggACTGACTGCACCAGCAAGATTTTCCTCATTGTAGAAGCCATTTGTCTTGTTCTATGTATGTATTTaacaaacagtgacaaaaaggaaacaaaaaatatatactacTGTGAAATGTgctttgtttctatttttcatTGCAACCGCCACAACGGCTCATGTAAAATAAAGTGAATTAAACTGAACGGCAACGTGCATAATCAACACTACTGCGTAACTAACAGAACTATCGACTCAACAGTTCACATCGCGTCACGGTGGTGCCATCGCCACACTCTGCCCCTGCATTGTGTATCCTAAGCTTGCAAGCCATGTGATTTGGAGATGTAAAGTGGTGTGATGGTAGCCGTATGGTCTGACTTGCAGTGACTAGGCTTGTGATTCAGCTTTACTCGTCGTGGGTGGGGACGTCCTCTCTGGTCATTGTGGCTGTTGTTTAATATATATACTGAAGAAAAATGCCTCTGCTGCATAGCTTTTATTTGAGATGGAGTCAgaacagaaacataaaaaacaaacaaaaaaaaaactacatttccTCAGGGCTCATTGTAACAGTTCATACCACACTTTGCAGTTAGTATTAAAGTTGTACATTTATATAAGGAGTCTTGAACAAAGATATTTCACTGGTGAGGCTGATAGTTTGGGTGTGATTAAAGTGTGTATGTATTGCTGAGCTGGTGATGTGTAAGCGTCCTCTGAGGAGGGGGGGAAGCGTGTCACGAGGTCCAAGGCGTTTGGATGTACATCACAGTATGTTTAGATGATTGATACTATTCGTGCAAGTTCCCGATGTCCTCTTGAAAATGGTGATGTCACCTCACGCTCCTAGTGAGGCTAATTTGTTCAGCAAGCACGGCACCAGCATAGCTCACACTGACAATGCAACATTACACATAGTTTTAAGTCAGAGTTTAAGatacacatttttaattttttgaatcTTGGGTTTTATTTTGGAAATGGGTTAAAGCACATGTTTTGTGTGGACTTTCACTGAATTtcctctgtttttctttctttggttGACAATCATTCATTGCTTCTTTGAGTGATCCTTCAGATAGACTGCTTAGTGCTCTGTACTTCTGTCGTATTGATTTTTGTTGAATGTTTGCATTTCCTGCTTTCTGTGTGTTATGCAActtttattgtaaatatttaTCCTCTAACATGTTTCATATACTTGCatctgaaatgaaaataaaaatttataCTCCAA
>XM_039812950.1
ttattgtgaaatgtcCAGTTAAGGCAGAATGCGACACAGGAAGATCCGCATTACGACTGCTGGTGAAGTGTTGCCATAACAGgtgttgttgttttgtgtgtgagtgttccAGTCCGAACCATGGAACAGTGCGCGTGTGTTGAGCGGGAGCTGGAGAAAGTGCTTCATCGCTTTGTAATGTACGGCCACCAGTCTGAGGAGAGGCTAGACGAGCTCCTGCACAGTGTCTGTGAGATACGAGGACAGCTAGTTGCTTTTGGAGTACAAGATGCAGACTTATCAGTCCTATCCCAGACTATGGCACAGTGTTGTAAGAATATCAAAgaaacagttcagatgctagcCTCCCGACATAAGGACATCCATGGCAGTGTGTCAAAAGTGGGCAAAGCCATTGACAGGAATTTTGATGCAGAGATCAGTGCCGTGGTGGCAGAGACGGTGTGGGACACcccagagagacagaaataccTGAGTGAGACCATTGTGGAACACCTGTACAGACAAGGCATGCTCAGTGTAGCAGAGGACCTTTGTCAGgagtctggtgtagttatAGATATGAGTATGAAGCAGCCTTTCCTGGAGCTGAACAGAATCCTTGAAGCTCTGAGGATGCAGGACCTCAGGCCGGCACTAGAGTGGGCTGTGACGAATCGGCAGCGCCTTTTGGACCTGAACAGCAGTCTAGAGTTCAAGTTGCACCGCTTGTACTTCATCAGCCTGCTCAGTGGGGGAATCGGCAACCAAATGGAGGCCCTGCAGTATGCCAGGCACTTCCAGCCCTTCGCCTCTCAGCACCAGAGAGATATTCAGATTCTGATGGGTAGTCTGGTGTACCTGCGTCATGGCATTGATAACTCTCCGTACCGCAGTCTGCTGGAGACAAATCAGTGGGCCGAGATCTGTAACATCTTCACCAGGGACGCCTGCGCTTTACTGGGTCTCTCTGTAGAGTCTCCACTCAGTGTTAGTTTTGCATCAGGCTGTATGGCCTTGCCAGTGCTGATGAACATCAAGCAGGTGATCGAGCAGAGACAGTGCAGCGGAGTCTGGACGCACAAAGATGAGCTGCCTATTGAAATCGACCTCGGGAAGAAGTGCTGGTACCACTCTGTGTTTGCCTGCCCGATCCTCAGGCAGCAGACCTCAGAGAGCAATCCTCCCATGAAGCTCATCTGTGGCCACGTCATCTCCAGAGATGCCCTCAACAAACTGACTAATGCTGGAAAgttgaaatgtccgtacTGCCCCATGGAGCAGAATCCGTCACATGCCAAGCAGATCTACTTTTGATACCGCACACTTTCTTCATGAGTAAGGATGAAGTTCCCTGGAGCTCTTTGCATTTCCAGGACCATTTGCTCTGGCCCTTTTTCCTCTGTCCCTGGCCTCTTGGCCTGTTATTGTAAGCATTAAGGTTTTATCCCAGTGCTCCTTTGGACAGCCTTGGCCATCCCGTAACCCACCTCGGACCCTCCAACTTTGCGTAGTATACAGAGTCCAGCGAGGATGGTCCAACTACAGCCTGTAGTAGAGTGAGGAGTCTGTCAGTAATGAGAACATCCTCACGAAGAAGCACCTCTTAAAAAGGTTCATTCATTGAAACTCATTTGCAAATGCCTGCAGAGTTATAGGCGTatctttttaaagtaagtaataCTTTATAGTTTTTCTCTGCTTTATCGACTGAGTTGGATgactgcttctttttttctttttttcccctctttttttttttttgtgaatgaagcAGTTGAATGATTATGGATGGGTGAGTGTGGGTAAATGGTATAGATAGGCAGTTTCTGATTTCAGAATGGTAATAAACTTCTATTATACATGAGGAAAAACCACAGGAAAACAAATTGTGATGAAGGTTTATTATTTGCTGGTGAAGGGAACTGTGGAGGTCTCTCTTGAATTGAACTCTTGATTGTGACCCATTGCTCCTCCATAATGTAATAAAGGCCTCACGTAGCTTGAAAGTCACTGTTGGCTGATGTATCTGTTTGACCAGTAAAACAATTAACTCACAATGGTGGAACAGCATTTTTATTtcctcctttatttttttttttttaaaatttttttgggACTGACTGCACCAGCAAGATTTTCCTCATTGTAGAAGCCATTTGTCTTGTTCTATGTATGTATTTaacaaacagtgacaaaaaggaaacaaaaaatatatactacTGTGAAATGTgctttgtttctatttttcatTGCAACCGCCACAACGGCTCATGTAAAATAAAGTGAATTAAACTGAACGGCAACGTGCATAATCAACACTACTGCGTAACTAACAGAACTATCGACTCAACAGTTCACATCGCGTCACGGTGGTGCCATCGCCACACTCTGCCCCTGCATTGTGTATCCTAAGCTTGCAAGCCATGTGATTTGGAGATGTAAAGTGGTGTGATGGTAGCCGTATGGTCTGACTTGCAGTGACTAGGCTTGTGATTCAGCTTTACTCGTCGTGGGTGGGGACGTCCTCTCTGGTCATTGTGGCTGTTGTTTAATATATATACTGAAGAAAAATGCCTCTGCTGCATAGCTTTTATTTGAGATGGAGTCAgaacagaaacataaaaaacaaacaaaaaaaaaactacatttccTCAGGGCTCATTGTAACAGTTCATACCACACTTTGCAGTTAGTATTAAAGTTGTACATTTATATAAGGAGTCTTGAACAAAGATATTTCACTGGTGAGGCTGATAGTTTGGGTGTGATTAAAGTGTGTATGTATTGCTGAGCTGGTGATGTGTAAGCGTCCTCTGAGGAGGGGGGGAAGCGTGTCACGAGGTCCAAGGCGTTTGGATGTACATCACAGTATGTTTAGATGATTGATACTATTCGTGCAAGTTCCCGATGTCCTCTTGAAAATGGTGATGTCACCTCACGCTCCTAGTGAGGCTAATTTGTTCAGCAAGCACGGCACCAGCATAGCTCACACTGACAATGCAACATTACACATAGTTTTAAGTCAGAGTTTAAGatacacatttttaattttttgaatcTTGGGTTTTATTTTGGAAATGGGTTAAAGCACATGTTTTGTGTGGACTTTCACTGAATTtcctctgtttttctttctttggttGACAATCATTCATTGCTTCTTTGAGTGATCCTTCAGATAGACTGCTTAGTGCTCTGTACTTCTGTCGTATTGATTTTTGTTGAATGTTTGCATTTCCTGCTTTCTGTGTGTTATGCAActtttattgtaaatatttaTCCTCTAACATGTTTCATATACTTGCatctgaaatgaaaataaaaatttataCTCCAA

Function

symbol description
rmnd5b Predicted to enable metal ion binding activity and transferase activity. Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of GID complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human RMND5B (required for meiotic nuclear division 5 homolog B).

NR:

description
PREDICTED: protein RMD5 homolog B isoform X2

GO: NA

KEGG:

id description
K23333 RMND5; E3 ubiquitin-protein transferase RMND5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812949.1 True 3345 mRNA 0.44 10 15783802 15791534
XM_039812950.1 False 3319 mRNA 0.44 10 15783802 15791552

Neighbor

gene id symbol gene type direction distance location
anxa6 anxa6,LOC102795126 coding downstream 54483 15717241 ~ 15729319 (-)
tnip1 tnip1,LOC103376067 coding downstream 67842 15698337 ~ 15715960 (-)
dctn4 dctn4 coding downstream 94984 15671635 ~ 15688818 (-)
LOC120566876 LOC104959829 coding downstream 145442 15621014 ~ 15638360 (-)
ctnna1 ctnna1 coding downstream 267042 15441419 ~ 15516760 (-)
hbegfa LOC104968122 coding upstream 58942 15850494 ~ 15854036 (-)
cltb cltb,LOC103471122 coding upstream 123328 15914880 ~ 15919202 (-)
dok3 NA coding upstream 486763 16278315 ~ 16286986 (-)
LOC120567264 ddx41 coding upstream 495529 16287081 ~ 16297362 (-)
fam193b fam193b coding upstream 507268 16298820 ~ 16309416 (-)
G105217 LOC103376071,LOC104959352 non-coding downstream 28785 15751454 ~ 15755017 (-)
G105149 NA non-coding downstream 213722 15569818 ~ 15570080 (-)
G105147 NA non-coding downstream 254543 15527066 ~ 15529259 (-)
G105113 NA non-coding downstream 419861 15363636 ~ 15363941 (-)
G105110 NA non-coding downstream 452663 15330925 ~ 15331139 (-)
G105230 NA non-coding upstream 36739 15828291 ~ 15828491 (-)
G105241 NA non-coding upstream 88811 15880363 ~ 15889068 (-)
G105243 LOC103365697,LOC106906325 non-coding upstream 98605 15890157 ~ 15892250 (-)
G105247 NA non-coding upstream 104705 15896257 ~ 15896732 (-)
G105253 NA non-coding upstream 110817 15902369 ~ 15904937 (-)
tspan17 tspan17,LOC103361971 other downstream 164694 15598343 ~ 15619108 (-)
G105086 NA other downstream 649066 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 675204 15089404 ~ 15108598 (-)
LOC120567441 LOC100697283,LOC102197909,LOC102314576 other downstream 1044309 14735192 ~ 14739493 (-)
uvssa uvssa,LOC104961899,LOC106533076 other downstream 1210309 14537100 ~ 14573493 (-)
hnrnph1 hnrnph1,LOC102791917 other upstream 74508 15866060 ~ 15871949 (-)
unc5a unc5a,LOC102788949 other upstream 168645 15960197 ~ 16103794 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 732804 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 1166091 16957643 ~ 16963536 (-)
tmsb1 NA other upstream 1350530 17142082 ~ 17151616 (-)

Expression


Co-expression Network