clk4a (LOC103354367,LOC101475428)


Basic Information

Item Value
gene id clk4a
gene name LOC103354367,LOC101475428
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18539401 ~ 18548715 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813034.1
GTCATCGGATTCTAGATGCGACCAGGGAAGCTCGCCATCTTTGAAGACGACTAGTCGGAGGCATTTTGCAGTATCTTTGTTCATAATTTTTTCATAATTAAACTGATACACCTCCCATTTGAATCCCATAATTGTAAAAGACAGATGCGCCACTCAGAGCGAATGCGCTCCCCAGGTGTCTGGCTCGATGAGTACAGCTGGGAAGAGAGAATGGAGTGTCGTAAACGAAAGAAACAAGATTCGCACAGCAGCGAAAGAGAAAATAAGTCCAGAAGAACTCACCATCAACACCAGGCCTATGAGGGGCACTTCTTGGAAACCCGCAGTTTGAACCAGAGGCTGGACTCtcgggatcgaaccaccaaggACCACCGTTTGGGCATGGCCTGTGAGGACAGCCGTGAAGGCACCTGCAAGGACAGAGACCGTGACTGGCACCACTACAGCAAGTCATCCGGGCGCAGTGGTCGGAGTGGTCGCAGCAGGCGAAGCAGCCGCAGGCACAGAGACAGAAGGCGCAGACGTAGCCACTCTCGCCACAGGTCCTCCTCGAGGAGGACCCAACAGCGCAGGAGCAGGAAAAGATCCAGGAGTGTTGAGGATGATGAAGAGGGTCACCTCATCTATCACAGTGGAGACATGCTGAGAGCGAGATATGAGATTGTGTGTACTCTAGGAGAGGGTGCCTTTGGGAAGGTCGTCGAATGCATTGATCACTCAAATGATGGAGCTCGAGTGGCTCTGAAGATCATTAAAAACATAGGCCGCTACCGTGAGGCAGCTATGTCTGAGGTAGAGGTGCTTGAACAGTTGAAGTCCCTCGACTCTGATAAGCGATATGCTTGTGTACACATACTGGACTGGTTTGACTACCACGGCCACATTTGTATTGCCTTTGAACTGCTTGGCCTCAGCACCTATGATTTCCTCAAGGAAAACAATTTCCAGCCTTTCCCCATAGAACACATCAGGCACATGGCGTACCAGATCATCCGGGCTGTGAGATTTCTGCATAACAACAAGCTGACTCACACGGATCTGAAGCCTGAGAATATTCTCTTCATTAGTTCAGACTATGAGATGGAGTACAACCCTGAAATGAAACGGGATGAACGGACATTGAAGAACCCAGATGTGAAAATTGTGGACTTCGGTAACGCCACGTATGAACATGAGCATCACACCTCCGTGGTGTCGACACGTCACTACCGTGCTCCTGAAGTCATTTTAGATCTGGGCTGGGACCATTCCTGTGATGTCTGGAGTGTAGGCTGCATACTCATTGAGTACTACCTTGGATCTACTCTCTTCCAGACTCATGACAGTAAAGAGCACCTTGCAATGATGGAGAGAGTCCTGGGCCCCATCCCCACAAACCTCCTGCAGAAAACCAAGAAACGGCGGTATGTTCACCGTTGCAAGCTTGACTGGGATGTGCACAGCTCTTCTGGGAGATATGTCAAGAAACACTGCAAACCCTTAAAGAATTACATGCTGTCTAAGGGCGAAGACCACCACCAGCTGTTTGACCTGATAGAGAAGATGATGGAGTATGACCCAGCAAAGCGCCTCAGTCTGGAGCAGGCCCTCCAACATCCCTTCTTCTCCTGCTTCCgcaagagcagcagcagcagcagcagtaaaagccaaagcagcagaggcagcagcagcagaagcagcagcagtagcagcaaaAGAGACTGAACTCCTGAACCTGTAACCTTGGCCAGGGCCTGACTGTCACCATGACATTTCTCATGGTGCGCAGTGGCAGCCTCTACTTCCTGACTCTCCAGGAGAGGTGTACCTTAACTGACTGTATCAGTCCACTGCCCTACCTTGCTGTGTCCTGTCCTAAGCCAGTGTGTTTCTTAGTCTCACTCATCAACAAGTTGTGTTCTCATCTCTGGCATGTTTTGATGTAATGAATCCCCCAGTTGATTTCTATTTATTTGCcattgtaatttaatttgtcACTCCTAAGCATATACTGGTAGAgctggtttttttttattcatgagtATTCAGAATGTGTCCCATGTTCTTTCTCTGCATTATGAAGTGGGTGATGGGTAATGTTACAAATTGAGAATTGCTTTACCATCCCATCAGTGTCACCAGTAATTTATTCAGCACTGTAGATGAATAAAAAAGCTATTGTGGGCAGAACATTTCTTGTATATAGAATTTAAgtaatttcttttttcactGACTGGTTATGCAACTTTTGCAGTATCATGTAAATTCTCAATAAACGTGAATAGACTATAGAA
>XM_039813035.1
CAAGGACAGAGACCGTGACTGGCACCACTACAGCAAGTCATCCGGGCGCAGTGGTCGGAGTGGTCGCAGCAGGCGAAGCAGCCGCAGGCACAGAGACAGAAGGCGCAGACGTAGCCACTCTCGCCACAGGTCCTCCTCGATGAGATTGTGTGTACTCTAGGAGAGGGTGCCTTTGGGAAGGTCGTCGAATGCATTGATCACTCAAATGATGGAGCTCGAGTGGCTCTGAAGATCATTAAAAACATAGGCCGCTACCGTGAGGCAGCTATGTCTGAGGTAGAGGTGCTTGAACAGTTGAAGTCCCTCGACTCTGATAAGCGATATGCTTGTGTACACATACTGGACTGGTTTGACTACCACGGCCACATTTGTATTGCCTTTGAACTGCTTGGCCTCAGCACCTATGATTTCCTCAAGGAAAACAATTTCCAGCCTTTCCCCATAGAACACATCAGGCACATGGCGTACCAGATCATCCGGGCTGTGAGATTTCTGCATAACAACAAGCTGACTCACACGGATCTGAAGCCTGAGAATATTCTCTTCATTAGTTCAGACTATGAGATGGAGTACAACCCTGAAATGAAACGGGATGAACGGACATTGAAGAACCCAGATGTGAAAATTGTGGACTTCGGTAACGCCACGTATGAACATGAGCATCACACCTCCGTGGTGTCGACACGTCACTACCGTGCTCCTGAAGTCATTTTAGATCTGGGCTGGGACCATTCCTGTGATGTCTGGAGTGTAGGCTGCATACTCATTGAGTACTACCTTGGATCTACTCTCTTCCAGACTCATGACAGTAAAGAGCACCTTGCAATGATGGAGAGAGTCCTGGGCCCCATCCCCACAAACCTCCTGCAGAAAACCAAGAAACGGCGGTATGTTCACCGTTGCAAGCTTGACTGGGATGTGCACAGCTCTTCTGGGAGATATGTCAAGAAACACTGCAAACCCTTAAAGAATTACATGCTGTCTAAGGGCGAAGACCACCACCAGCTGTTTGACCTGATAGAGAAGATGATGGAGTATGACCCAGCAAAGCGCCTCAGTCTGGAGCAGGCCCTCCAACATCCCTTCTTCTCCTGCTTCCgcaagagcagcagcagcagcagcagtaaaagccaaagcagcagaggcagcagcagcagaagcagcagcagtagcagcaaaAGAGACTGAACTCCTGAACCTGTAACCTTGGCCAGGGCCTGACTGTCACCATGACATTTCTCATGGTGCGCAGTGGCAGCCTCTACTTCCTGACTCTCCAGGAGAGGTGTACCTTAACTGACTGTATCAGTCCACTGCCCTACCTTGCTGTGTCCTGTCCTAAGCCAGTGTGTTTCTTAGTCTCACTCATCAACAAGTTGTGTTCTCATCTCTGGCATGTTTTGATGTAATGAATCCCCCAGTTGATTTCTATTTATTTGCcattgtaatttaatttgtcACTCCTAAGCATATACTGGTAGAgctggtttttttttattcatgagtATTCAGAATGTGTCCCATGTTCTTTCTCTGCATTATGAAGTGGGTGATGGGTAATGTTACAAATTGAGAATTGCTTTACCATCCCATCAGTGTCACCAGTAATTTATTCAGCACTGTAGATGAATAAAAAAGCTATTGTGGGCAGAACATTTCTTGTATATAGAATTTAAgtaatttcttttttcactGACTGGTTATGCAACTTTTGCAGTATCATGTAAATTCTCAATAAACGTGAATAGACTATAGAA

Function

NR:

description
PREDICTED: CDC-like kinase 4 isoform X2

GO: NA

KEGG:

id description
K23561 CLK1_4; dual specificity protein kinase CLK1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813034.1 True 2273 mRNA 0.48 13 18539401 18548715
XM_039813035.1 False 1757 mRNA 0.47 10 18539401 18544295

Neighbor

gene id symbol gene type direction distance location
col23a1a col23a1,LOC101473796,LOC107101682,LOC107375271,LOC102080853 coding downstream 948 18415035 ~ 18538453 (-)
rack1 rack1 coding downstream 126925 18408549 ~ 18412476 (-)
nme5 nme5 coding downstream 131186 18403444 ~ 18408215 (-)
LOC120567277 hnrnpab,LOC103359197 coding downstream 137221 18398428 ~ 18402180 (-)
LOC120567275 fam53c coding downstream 149948 18382870 ~ 18389453 (-)
LOC120566508 rasgef1c coding upstream 4954 18553669 ~ 18606715 (-)
mapk9 mapk9 coding upstream 71418 18620133 ~ 18640808 (-)
gfpt2 LOC108240504,LOC102303939,LOC102210943,LOC106517552 coding upstream 93777 18642492 ~ 18658559 (-)
LOC120567095 kiaa1191 coding upstream 117349 18666064 ~ 18677366 (-)
LOC120566256 NA coding upstream 129116 18677831 ~ 18679252 (-)
G105835 NA non-coding downstream 503644 18035382 ~ 18035757 (-)
G105834 c1qtnf2,LOC103471225 non-coding downstream 504153 18033407 ~ 18035248 (-)
G105827 LOC108238064 non-coding downstream 515505 18022437 ~ 18023896 (-)
G105820 NA non-coding downstream 523474 18015451 ~ 18015927 (-)
G105806 atp7a non-coding downstream 559103 17978312 ~ 17980298 (-)
G105967 LOC100708117 non-coding upstream 1395 18550110 ~ 18551684 (-)
G106057 NA non-coding upstream 161327 18710042 ~ 18729032 (-)
G106066 NA non-coding upstream 449825 18998540 ~ 18999875 (-)
G106068 NA non-coding upstream 453057 19001772 ~ 19002114 (-)
G106073 NA non-coding upstream 498549 19047264 ~ 19047863 (-)
reep2 reep2,LOC102782871 other downstream 224986 18285958 ~ 18314415 (-)
LOC120566360 fabp6,LOC102785055,LOC101485489 other downstream 470909 18067425 ~ 18068492 (-)
sfxn1 sfxn1,LOC103359221,LOC100705454,LOC106517750,LOC103471194 other downstream 544051 17987196 ~ 17995350 (-)
LOC120566288 NA other downstream 679646 17857084 ~ 17859755 (-)
LOC120567448 LOC103359144,LOC108240510,LOC107375047,LOC100701092,LOC102792911,LOC102297680,LOC101469512 other downstream 744010 17783560 ~ 17795391 (-)
LOC120566257 NA other upstream 139073 18687788 ~ 18691410 (-)
rgs14b rgs14 other upstream 469037 19017752 ~ 19044951 (-)
LOC120566717 LOC102215832 other upstream 667274 19215989 ~ 19250436 (-)
tomm5 NA other upstream 887124 19435839 ~ 19436927 (-)
tlr1 LOC104951710,LOC102197886 other upstream 929215 19477930 ~ 19482625 (-)

Expression


Co-expression Network