LOC120566529 (LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975)


Basic Information

Item Value
gene id LOC120566529
gene name LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20064986 ~ 20067565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813055.1
GACCCAAAGAGACGGGTTGAAAGACCGAACTAAACAgccttcattcagaatggtggTTCCCGCAGACCATTACTGTTTATTATCCGTGAGagaatactaaaaaaaaaaacaattttgttGACAGATTTAAGACTATTTTTTTCTCCAGAAATGGCGATAACGGACATCAAAGGAGAATGGCTGGGTGTGTGGATTTATTTCTGTCTGTCCCTGCTGATTGTGACTAATTTGAAAGGAATCTCTGCACAGATACGATATTCAATTCAGGAAGAAGTCAAATTAGGAACGGCAGTTGGAAATGTGGCCAAAGACCTTGGATTAGATGTGGGACGACTGACGGATAGGAATCTTCGTGTCATTGCAGGAACAAAGCAGGATTTGTTTAAGGTAAATCCGAGAGATGGAGTTTTGTTAGTCAGCGAGAGAATAGACAGGGAGGAGCTGTGTGTAAAAACGGCTCCATGCATCACAAATCTGAAAGCAGTTGTAGAAAATCCTCTCGAGATGCACCAAATAATAGTTGAAATACTCGATATAAACGACAATTCTCCGAGATTCCCAGAAGAAAATTACACATTAGAGGTGCTAGAGTCCGCCATAGTTGGTTCTCGATTTCAAATGGAAGGAGCACACGACTTGGATGCTGGTTTGAATTCCTTACAATCATATAAGCTCAACcataaccagtattttcgcctgGAAACCGAAGAATTTGGGGAGGATGGAAAGGTTCCATTTCTCATTTTACAGCGACCTTTGGATAGAGAACACGTCGATCAACACTGGTTACTCTTAACAGCTAATGATGGAGGTAAACCTTCAAAATCTGGTACTATTAATATCACTGTCATTGTGTCTGATATAAATGATAACTCGCCTAAGTGTGATAAACAGAAATACACCATAACAATAAAGGAAAACGCACCTGCAGGGACATTTCTGCTGACAGTAAATGCATCTGACTCAGATGAGGGAATGAACAGTTTGATTGAATATTCTTTACGGAGTAAACTTAGAAAACTCTCATCTGAACCGTTTGATTTAAATAGCAGCACTGGTACACTTACATTGAAAGAGGGCCTTGATTACGAGGAAAAGCAAGTCTATGAAATTAAGGTACTGGCTGCGGACAAAGGTGCTgtgtctctctccacacactgCAACGTGGTTGTTAGAGTGGAAGACGTGAACGATAATAAACCCGAAATAGACATCACATCCCTTTCAAGTCGCATTTCAGAGGATGCACCTCCTGGCACGGTGGTGGCGTTGATGGATGTGACGGACCTTGACTCAGGTGTGAACGGACAGGTGGTCTGCAGTGTGCCCGGCCATTTACCTTTTGACTTAAATCCATCCCCGGACGGACAGTCATACTCTTTGGTCACGAAGGACTACCTAGATAAGGAAACCAtgcatatatataatattacaatAATGGCTAAGGATTTAGGGAGCCCCGCTATGTCATCTACGAAGGTAATACAGGTAGATGTGCTAGATGTTAATGACAATCGTCCTTTGTTCACTGAAAGCCCATATACTTTTTATGTGCCTGAAAACAACAAGGCTGGAATTTCAATTTTTTCAGTGAGCGCGGGAGATGCTGATGAAGGCGAAAATGCGGCAGTCACATATTCACTCAACCGGAAGATTCCAGGGCCCACTGTAACTTCTTTTTTGAATATAAATGAAGCCGATGGCACCATTTCCGCACTAAAAGGTTTTGACTTTGAAACACTGAAAACTTTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTGTATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCGGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACaaaggatgaggaggagaataATGTGACTTTTTACCTGATGATAACTTTGGGCTCagtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCGGGCAGCCATGCGAATACACTAGTGCTGCCTGACAGGAGAGGGGCATCTGGAGAGGTAAGACATGAAAAACGTTTTACACAGTATGTTTACAAGCATATAATTCTGTGTTTTTGCTTTGCTTAA

Function

NR:

description
PREDICTED: protocadherin alpha-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813055.1 True 2580 mRNA 0.43 1 20064986 20067565

Neighbor

gene id symbol gene type direction distance location
LOC120566322 NA coding upstream 24606 20034393 ~ 20040380 (+)
si:ch73-233f7.1 LOC103359310,LOC104951883,LOC102312450 coding upstream 42723 20015208 ~ 20022263 (+)
fbxw11a fbxw11 coding upstream 101738 19942409 ~ 19963248 (+)
etf1a etf1,LOC108430956 coding upstream 124141 19932847 ~ 19940845 (+)
bicc2 LOC104951703,LOC100700004,LOC102206312,LOC101472209,LOC102314010 coding upstream 469487 19584399 ~ 19595499 (+)
LOC120567232 LOC103375287 coding downstream 898 20068463 ~ 20071057 (+)
LOC120566530 LOC103375287 coding downstream 4790 20072355 ~ 20074975 (+)
LOC120566532 LOC103375285,LOC102798382,LOC102309450,LOC101072791,LOC101076589,LOC106516975 coding downstream 8188 20075753 ~ 20078369 (+)
LOC120566533 LOC103375287 coding downstream 14808 20082373 ~ 20085207 (+)
LOC120567230 LOC103375287 coding downstream 21975 20089540 ~ 20145603 (+)
LOC120567444 NA non-coding upstream 66185 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 110023 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 123271 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 216708 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 462893 19515958 ~ 19602093 (+)
LOC120567249 NA non-coding downstream 206268 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 642944 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 1032919 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 1039933 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1125501 21193066 ~ 21194849 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 3648 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 412512 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1095040 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2165255 17890170 ~ 17899731 (+)
G105677 NA other upstream 2379287 17682919 ~ 17685699 (+)
G106465 LOC104955902 other downstream 284156 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 867164 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1212122 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1221966 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 1381235 21448800 ~ 21468827 (+)

Expression


Co-expression Network