LOC120566542 (atg2a)


Basic Information

Item Value
gene id LOC120566542
gene name atg2a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23238348 ~ 23243599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813066.1
AACGTCGACCAGGACGCATTGTTTTTCCTGAAGGACTTTTTCAGCAATTTGGCTTCCTTTGTTAACCCTTACCTGCCTGTGGACCCTGCAACTGAAGTGAAGGCAGACCCCTACCAGAAGGCCTCAGAGGAGACGGAGTCAGCCGCTGGTCTGGGACCTGACCTCACAGCTTCTGTGGAAACTACCTTCAGCGAGCAGAGCTCCTCCTCTGCTggctccacctcctcctccgaCCAGCCAATCTACTTCCGGGAGTTCCGATTCACCTCTGAAGTGCCTATTTGGCTGGACTATCAGGGCAAGCATGTCGCCATTGAACAGGGAACGTTTGCAGGGATTCTGATCGGTCTGGCCCAGTTAAACTGTTCTGAGTTGAAGCTGAAGAGGCTCTGCTGCAGACACGGTCTCCTCGGTGTGGACAAAGTGATCCAGTATGCCGTCACAGAGTGGCTGACGGACATCAGGAAGAATCAGCTGCCGGGCATTCTGGGAGGTGTTGGCCCCATGCACTCGGTTGTCCAGCTGTTCCATGGAGTGAGGGATCTGTTCTGGTTGCCCATAGAGCAGTACAGGAAGGATGGACGCATTATTAGAGGTCTCCAGAGGGGGGCAGCATCCTTTGGTACCTCCACAGCATCAGCTGCTCTGGAGCTCAGCAACAGGCTGGTGCAGGCCATACAGGCCACAGCAGAGACGGTGTATGACATCCTGTCTCCAACTCCACCCCTGAACCGCTTTGCCATCACAGAAGGCCGGGCCCCCTCGAACAGGCCCCGCAGAGCTGCTCAACCTGCAGACCTCCGAGAAGGTGTGGCCAAGGCCTATGACACTGTCAGAGAGGGAGTGATTGACACAGCTCAGACCTTGTGCGATGTAGCATCCCGCGGCCACGAACAGAAGGGTCTACCCGGCGCTGTGGGCGGCGTCCTGCGGCAGATCCCACCCACTGTGGTCCGACCCTTAATAGTGGCCTCTGAAGCCACTTCCAATCTTCTCGGGGGCATGCGGAACCAGATCAAACCAGACGCCCGGAAGGAGGATTTCCTGAAGTGGCGCACGGATGATGGCCAAGAATGAAgacaacttttttttgtctgtgtgagagagagaaagtgtgtttgtgtgtgcaattATGACTTGTGGAAGTCTCGGCTAAAGGAGAAAATCTAGGGTTTGAATgtgtatttgcatgtgtgtatggACTAATGAGAGTCAGTGTTGGCTCcaatgcaaaaacaaagcaacgaCTAACGACTACTGCAGTTACTGACACCCAGTGTTTTATGTGGCTCCATCATACATGGACTTAACCAGATTTAATCATTCTGTTTGCATTTGGCAAGAGCTCTCCTCATATTCCTCCCCTCAGTGAGATACTAGTCTGCAGATTCTCCTTACTGTCTGTGCAAACATATCACCGTCACTCTCAACAGTTCATTTTCAATCCAACCAAGGGCAGATAGGATTATCACTCAAGGTTTACTTATGTATTGTGGGCACTCCATGTACTCTGAATTGTGCTGCTTCAAACTGTTTGTATTCTTATTTAAAGTAATGCTTTCTGGCACAATTTCACCTTCTTCCAAGGTCCATGGAGAAGAAGTAAGAGGAAGTAGGAAGAAGGTGAACTTATGTCAGAAATTCCTTCTCTTTGTATTCCAATTCACCCATCACTAGCTGCGAACAGTATACCTTTTATGGGTGCATTATGTGATGTGTTGTCCAGTGATGCTCGTAGTAGAGACAGGGAGATATTTTAATGAAGTGTCCTTTGCTAACACCCTCTAGATGGTTTTCACCCTCActtcacaacacaacacattgtCATTGGTTCAGCTTTGGTTCACCCTCCCTGCTACTGTCAAGTATACTGGCTCATATGGATACATACCTGACTGAGAACAAGTTTCCTGACTAAAAAGATAAACAGATCACACGAAGCCTGTAAACTCTGTAGCGCATTGGATTATTTTAAAGTTTCACAAAGTCAAGATAGACTTCAGTTGTCTGTAACTCAGACAGTTCTCCAGATATTAGCCGGTGGTTCTTCCTTCTGCATTGCAGCTCATTTGTGCTTCGGTTTCCATCAACAGTTAAAGACTGAGATCTGGATAACTCTTCTCGGTCTTCAGAAttgcttttctctcttctttagTTGCCTTCctgcatttttttatgtttctttatttgttttttattctgttAAAACATTTAAGTATTGTCATACTcgttttcaaaataagagttgAAAGGATGTGAATCTGGTGACGATGGAGGATGAAAAATTTAGTGttttgtggttaaaaaaaaaaagttttacatttttatcttttttgtttaagagtaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
atg2a Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagy of mitochondrion; autophagy of nucleus; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum membrane; lipid droplet; and phagophore assembly site membrane. Predicted to be active in phagophore assembly site. Predicted to be extrinsic component of membrane. Orthologous to human ATG2A (autophagy related 2A).

NR:

description
PREDICTED: autophagy-related protein 2 homolog A

GO: NA

KEGG:

id description
K17906 ATG2; autophagy-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813066.1 True 2407 mRNA 0.47 9 23238348 23243599

Neighbor

gene id symbol gene type direction distance location
atg2a atg2a coding upstream 1184 23215893 ~ 23237164 (+)
nxf1a nxf1,LOC102775940 coding upstream 24415 23200615 ~ 23213933 (+)
si:ch73-22a13.3 LOC102780362,LOC103374341,LOC102213327 coding upstream 39393 23193164 ~ 23198955 (+)
LOC120566426 bscl2 coding upstream 45295 23188036 ~ 23193053 (+)
zbtb3 LOC105026702 coding upstream 55414 23176838 ~ 23182934 (+)
trmt112 trmt112,LOC102775658 coding downstream 852 23244451 ~ 23251375 (+)
zgc:162144 LOC100705221,LOC102196865,LOC102798772,LOC101467665,LOC103374172,LOC107377608 coding downstream 67137 23310736 ~ 23314230 (+)
nudt22 nudt22 coding downstream 109659 23353258 ~ 23357565 (+)
hs6st2 LOC104925546,LOC104960671,LOC103374067 coding downstream 130618 23374217 ~ 23377146 (+)
mbnl3 LOC100691532,LOC101470482,LOC102193800,LOC102309145,LOC102795898 coding downstream 134611 23378210 ~ 23410314 (+)
G107276 NA non-coding upstream 898 23237251 ~ 23237450 (+)
G107203 NA non-coding upstream 279768 22958158 ~ 22958580 (+)
G107185 NA non-coding upstream 281449 22919853 ~ 22956899 (+)
G107191 ganab non-coding upstream 306186 22929269 ~ 22932162 (+)
G107187 ganab non-coding upstream 311612 22925809 ~ 22926736 (+)
G107334 NA non-coding downstream 27200 23270799 ~ 23271221 (+)
G107341 NA non-coding downstream 39380 23282979 ~ 23285214 (+)
G107340 NA non-coding downstream 41764 23285363 ~ 23287678 (+)
G107353 stx5 non-coding downstream 75793 23319392 ~ 23320649 (+)
G107377 NA non-coding downstream 173625 23417224 ~ 23417543 (+)
flrt1b LOC103374305,LOC102200053 other upstream 105663 23100025 ~ 23132685 (+)
rom1b rom1,LOC102779683 other upstream 241310 22950595 ~ 22997038 (+)
G107168 NA other upstream 264587 22954972 ~ 22973761 (+)
ubxn1 ubxn1,LOC103374193 other upstream 328786 22903755 ~ 22909562 (+)
G107163 LOC103356264 other upstream 372672 22862190 ~ 22865676 (+)
tgfb5 LOC104925539,LOC103374198,LOC102800105,LOC105920438,LOC102314494,LOC101466107,LOC100690458 other downstream 9156 23252755 ~ 23262261 (+)
G107333 NA other downstream 25192 23268791 ~ 23270216 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other downstream 210941 23454540 ~ 23466205 (+)
LOC120566905 LOC104953971 other downstream 244686 23488285 ~ 23492538 (+)
G107386 cfl1 other downstream 249245 23492844 ~ 23494989 (+)

Expression


Co-expression Network