LOC120566628 (LOC104961166,LOC103390920,LOC102076832,LOC103354772)


Basic Information

Item Value
gene id LOC120566628
gene name LOC104961166,LOC103390920,LOC102076832,LOC103354772
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21146681 ~ 21154828 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813179.1
ATGGCGGATGCCAACGCGATTGAGGAACTACACTCGGAGCTCACCTGCCCGGTGTGTTTGGAGCTGTTCCACGATCCGGTGATCCTCGAGTGCGGACACCACTTCTGCCAGGTGTGCATCATCCAGTGCTGGGAGGCCAAGGCGGACGAGTTGTCGAGTTGCCCAAAGTGTAGAAAGTCGAGCGGCCGTAAACTGCGACCCAACTCGCTTCTGTGCAACGTCGTGGACAGTGTGCGGAGAGCCCGGGCCATGGACCCAGCCGCGGGGGTAACCGGATGGCAATACGAGGGTGAGCTGGAGGAGCCGGAGGAACGGGAGCTCGGGTCCAGCATGAGCAGCCTGGCCTCGTCCGTCGGCCACTGGCCGCGCCTGGGTACGGGCATGGATATGTGCGAGGAGCACGAGGAGAAGCTGAAGCTGTACTGTGAGGACGACCAGCTCCCTATCTGTCTGGTGTGCGGCATGTCCCGGGACCACAAGACCCACAATGTCATCCCCATTACCGAGGCCTTTGAAAACTACAAGGATAAGCTGTCTGTCGCTCTAGAGAGGGTTCAGCTGCAGACAGAGGAGGCCACGCTCTTCCAAAGACAGACCAATGAAAAGATCCTTCTcgtcaagGAGCGAGCAGGAGATCTGGAGGAGACGGTCACTGCAGAGTTTGGCCTTCTGAGGGAGTTCCTGCTCGAGGAGGAGGAACGCATAAAGGAGAAACTGCAGAAGCAGAAAGAGGAGAAGCTCGACCAGCTGGAGAAGGCGCTCACTCAGACCACAGAGCAAATCAGCAAAATGGAAAGTATGGCTGACCAGCTTCGCCTCAAACTGATAGAGGAAGAAAACCCAAAGCAACTCAAGGGAATCAAAGATTTCATTGGAGGggctGAGAGCTTGTTTGAGCACCCCCCAGAGCTGGATGTGGATCTGCAGTCAGGAGAGTTCCTGGGACCTCTGCAGTATAGGACCTGGAGGAAAATGAGCTCAATGTTTCAGCCagCTGTCACAGCGGTGACCCTTGACCCGGACACAGCCTACCCCCGCCTGTGGGTATCCCCGTGTTGCACCAGCGTCCAGGTAGGAAAAATCCAGCCCAACCTgccaaacaacccagagcgctTCACTCTCTACAACATTGTCCTGGGCTCTGTAGCCTTCTCCTCTGGTAGACACtactgggaggtggaggtgggcTCCAAGACAGCATGGGGTCTGGGTGTGGCCAAAGCCTCCGTCAACAGAAAGGAGGAGATCAGCCTCTGCCCAGATGATGGTTTCTGGACCCTGGTGCTGAGGGATAACGGCGACGGCACCAGGGAGTATGAAGCATGCACTGACTCAGAGGAGAGCTTGATATATCCCTCTAAACCCCCAAGGAGGGTTGGGATCTACCTGGACTATAATCGTGGTGACGTAGGGTTTTATGATGCAGGAAACATGAGCCACCTCTTCACCTTCTATAATGCCAAATTCAAAGAACCTGTTTTGCCGTACTTTAATCCCTGGCCGATAATCAACGGACACAACCGGGAGCCGCTCACCATAGTAACCCCACACTGGGGAGAGATGTCCTCTTCATCAGAGGAGTCTGAATGAAACTGCAGAACAAGATTCAGCTGCTGATAAACTTAGATGGACTCATGTTATGAGCTTTCACACATCTACCTTGTCATAAAGACTTTGCTGTGTTAATGATGTGGTGGGATGAACACGCAGGTAACCCTGAAACATTCGTGTTAGACTTGAAATAAGAAGATGAAACTATTAAAGGACAAGACAGAGGACACTTTCAAGGCTGTTTATAGTCTACAATGTTGccattgtcaacaaatcctatGAAAAGACCAAACCCAACAGTGAATTGATGATACTTACAACTGCCTGTGTAGCCAACGTCTGATACAGTATATCTTATTCCTATGTGCCATAAACCTCAATTATATTGCAAAGAATAGTGTATTCAGGCTGTTCCTTCGACCTCATGGCTCAGTTTTTGGTCTGACATGCATAGCCAGCTGTGAGACCTTCTATATAGACCGGTGTGTGTGCCTTTTTAAATCTTGTCCAATCAATTGAAGTTACCACAGGTGGACTCCAATCAAGTTGTAGAAACATCAGAAGGGTGATCACATGAAATGGGGTCTTATGTTAATGcaatatttaactttttctttttaatacatTTGCAAAAACATCTGAACTCctgttttggctttgtttgTATTGGGTAATTGATTATAGATTGAGGGGAAAATGCATTTAAGGAtttacacattaagtagacatgAATGGGCTTTGGGGCTGAGTATTATTAAAAAGTACTGAGAGACACACTAACGCATTGTAggttttagtcttttcaaacaataagaaaaaaaacagtagacaTTTCTATAAGATTTTCTACTGGATTTTAAATTCATTACAAAAAgttccctgtggagtttttgacctAATAGCGCTATGAATTTACTTGGTAGTAAACATGGATGTCAACAATGCCTTTGcaaatatttagaaaaaaaatgcattcaacacATTTGTTAGAGCTCAAGGATACACACATAGCGTTTTAGTGAGTAACACTGAAtgcattgcattgtttaaaaagaaaactccacagaaCTTTAACTGGTCTCTGCAAAAAGGCTTCATAATCGTATTAAATAATTTTGCTGCAATGTCTTACTGTGTGTTTTGAAGCCGTTATGTATCCAATCCTGTTATTCTAATGACATGTAcagtttttctaaataaatgaagTAATGACTTCTA

Function

NR:

description
PREDICTED: zinc-binding protein A33-like

GO: NA

KEGG:

id description
K12009 TRIM27, RFP; tripartite motif-containing protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813179.1 True 2769 mRNA 0.47 6 21146681 21154828

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-121d2.7 LOC103354771 coding upstream 10234 21132215 ~ 21136447 (+)
LOC120567251 NA coding upstream 78961 21060005 ~ 21067720 (+)
LOC120567467 tlx3,LOC102778180,LOC103390932,LOC104948897 coding upstream 184201 20958750 ~ 20962480 (+)
LOC120567465 fam196b,LOC106941975 coding upstream 281667 20842597 ~ 20865014 (+)
LOC120567195 LOC108243068,LOC106924634 coding upstream 617023 20526783 ~ 20529658 (+)
cabp2b cabp2,LOC103354773,LOC101063225,LOC104961167,LOC100691085,LOC101481420,LOC107101015,LOC105932663,LOC106516609,LOC102297131 coding downstream 4067 21158895 ~ 21173771 (+)
LOC120566636 LOC104961169,LOC103354768,LOC101069382 coding downstream 25163 21179991 ~ 21182550 (+)
slc43a3b slc43a3 coding downstream 87626 21242454 ~ 21259046 (+)
rtn4rl2b LOC104945075,LOC103358608 coding downstream 110164 21264992 ~ 21271131 (+)
clp1 clp1,LOC102795812 coding downstream 129190 21284018 ~ 21287806 (+)
G106684 NA non-coding upstream 38322 21107498 ~ 21108359 (+)
G106679 NA non-coding upstream 45846 21100484 ~ 21100835 (+)
G106577 NA non-coding upstream 415008 20710509 ~ 20731673 (+)
LOC120567249 NA non-coding upstream 870770 20273833 ~ 20275911 (+)
LOC120567444 NA non-coding upstream 1147880 19973785 ~ 19998801 (+)
G106707 NA non-coding downstream 38238 21193066 ~ 21194849 (+)
G106708 NA non-coding downstream 41351 21196179 ~ 21196654 (+)
G106709 ctnnd1 non-coding downstream 41976 21196804 ~ 21202170 (+)
G106712 LOC103354767 non-coding downstream 49861 21204689 ~ 21205376 (+)
G106851 NA non-coding downstream 292054 21446882 ~ 21447096 (+)
hrh2a LOC103354784,LOC104948895 other upstream 199266 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 794514 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 1085343 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 1494207 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 2176735 18963934 ~ 18969946 (+)
selenoh selenoh other downstream 124859 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 134703 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 293972 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 1707362 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1748927 22903755 ~ 22909562 (+)

Expression


Co-expression Network