cabp2b (cabp2,LOC103354773,LOC101063225,LOC104961167,LOC100691085,LOC101481420,LOC107101015,LOC105932663,LOC106516609,LOC102297131)


Basic Information

Item Value
gene id cabp2b
gene name cabp2,LOC103354773,LOC101063225,LOC104961167,LOC100691085,LOC101481420,LOC107101015,LOC105932663,LOC106516609,LOC102297131
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21158895 ~ 21173771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813183.1
gtgtatGTGAGCCTGTGACACCGAGATGTTCATGATCATTCGAGAGTCGTCCGCCGGAGGAGGCGGTGCTGGAGCGATGAGCGCGCCACAGGAGAGGAGTGCAAAACAGGTACAGGCCGCTATCAAGAAGAAGATGGAGAAGCAGAAGAAGCGAACCAACGAGCAGGGAGGTGGCGTTGGAGAGGTTCAAACTGCTACACCTCAGCTTCCTCGCCACCAGAAATTCGGTCAGTTGCCCCAAACGACAGCGGCGGCCGCTGAGGACAGAAAGACCctggaggaggagctggaggagatGATGGAGGGAccacaggggagagagaggcagaacgAGGAGGACGGGGAGCCTGTCGACCTGCTGCCCATCGTGGACTCTATGTTTGGACAGGACAGAGAGCTGAGACCAGAGGAACTTGACGagCTCCGCGAGGCGTTTGTGGAgtttgatagaaaaaaaaaaggctacatCAGTCACAACGACCTGGGGGAATGTATGAGGACCATGGGATACATGCCGACAGAGATGGAGCTCATCGAACTGAGCCAGCAGATCTGTGGAGGTAAAGTGGACTTTGAGGACTTTGTGGAGCTGATGGGACCCAAGTTGCTGGCAGAGACAGCAGACATGATCGGAGTCAAAGAACTACGAGATGCATTCAAAGAGTTTGACTCTAATGGTGACGGCCAGATCAGTTTAACTGAGCTACGTGAAGCCATGAAGAAGCTGATGGGAGAACAAGTGACCAACAGAGAGATTAACGAGATCCTCCGAGATGTCGACCTCAACGGAGATGGTCTGGTGGACTTTGAGGagttTGTTCGAATGATGTCCCGCTGAGCCGCCCACATGtcggatggacagacagacattatGCAACTGCTGGATTAGAGAACACACTACATCATAGTGGACATCCTTCATCTGCTCTTATGAGCACACAtctaaaattgtatttttatattgaatactgaaaaaagaaaaaatagacaTATATTTGAATAGACATATAGTATCCAGCCTACAACTAACATGACTATCCACATCTGAACTCCAGGTGCAACACAAAGTTAAAGCACTTTAACATATCAAACGCTTCATAGACAACATTTATGACTTTGTGTTTTTtagatgtatttttttgtatatcaATGTTTGAGCTTTGACTGTAACATCTGGTTTgttaaactgtgaaaaaaatattttgttaattaaagaaatgtacaaaaata
>XM_039813184.1
AATCTCAAATGGAAGGGATTAATCCATCTCTTAATCCTCCATCTAAAACTCCTCATACTGTAGATGAAGTCATTTGAATGCTGCTGGTGCAACATGTGAacaagagggaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgctacTGAAAAGAAATAGAGAGGGGGATTAAAAGGGTGGATCCGTGTGAAGAGAAAGCAACAGCGATGCTGCTGCTGCGAAGAGAATCACCAGTAAGCTGCTTCCAGTAGAAAGCTCAGTTTGGTTTGGTTAGTTTGTTTTTGATTGGTGACGTCTTTTGACTTTGGATGGTATAGAGACGGGTGCAGTCGGTCAGGATCGCTCATGCATGGATTAGAGCCGTTTACTTTTTGTCTCTGTGGTATCAATTATGAAGACTGATAACCAGCATGGGACACAAGTTTCCACCAAAGTCAGAGCTCTAACCTGAGCTGGACCTCTGAGAAGtccagagagaggagagcagagagagaagagataaaaacagacaaataagatcagagaaagaaaaaagattttTGGCAGCTGTTGACCAGAGAAGGTTGGGTAATGGGCAACTGCACCAATCCGAAAGACAAAATGAAGAAGGGAGTAATGGATGGGTCCCTCAGGGGTAAGGTGAGGGCAGTGGGCCAGGAGGGAGAAGAGGATCAGGACGTGGAGGATAAGCCGTTCAACGATCCCTTCTGTATGCTGGTGAAGAACTGCAACATGCTGCACAACATCGTGGGCCCGGCCTGCATCTTCCTTAAACATGGCTTTTCACAGACACTCGACAGAGAGCTGAGACCAGAGGAACTTGACGagCTCCGCGAGGCGTTTGTGGAgtttgatagaaaaaaaaaaggctacatCAGTCACAACGACCTGGGGGAATGTATGAGGACCATGGGATACATGCCGACAGAGATGGAGCTCATCGAACTGAGCCAGCAGATCTGTGGAGGTAAAGTGGACTTTGAGGACTTTGTGGAGCTGATGGGACCCAAGTTGCTGGCAGAGACAGCAGACATGATCGGAGTCAAAGAACTACGAGATGCATTCAAAGAGTTTGACTCTAATGGTGACGGCCAGATCAGTTTAACTGAGCTACGTGAAGCCATGAAGAAGCTGATGGGAGAACAAGTGACCAACAGAGAGATTAACGAGATCCTCCGAGATGTCGACCTCAACGGAGATGGTCTGGTGGACTTTGAGGagttTGTTCGAATGATGTCCCGCTGA
>XM_039813185.1
gagagagagagagagagagagagagagagagagagagagagagcgctacTGAAAAGAAATAGAGAGGGGGATTAAAAGGGTGGATCCGTGTGAAGAGAAAGCAACAGCGATGCTGCTGCTGCGAAGAGAATCACCAGTAAGCTGCTTCCAGTAGAAAGCTCAGTTTGGTTTGGTTAGTTTGTTTTTGATTGGTGACGTCTTTTGACTTTGGATGGTATAGAGACGGGTGCAGTCGGTCAGGATCGCTCATGCATGGATTAGAGCCGTTTACTTTTTGTCTCTGTGGTATCAATTATGAAGACTGATAACCAGCATGGGACACAAGTTTCCACCAAAGTCAGAGCTCTAACCTGAGCTGGACCTCTGAGAAGtccagagagaggagagcagagagagaagagataaaaacagacaaataagatcagagaaagaaaaaagattttTGGCAGCTGTTGACCAGAGAAGGTTGGGTAATGGGCAACTGCACCAATCCGAAAGACAAAATGAAGAAGGACAGAGAGCTGAGACCAGAGGAACTTGACGagCTCCGCGAGGCGTTTGTGGAgtttgatagaaaaaaaaaaggctacatCAGTCACAACGACCTGGGGGAATGTATGAGGACCATGGGATACATGCCGACAGAGATGGAGCTCATCGAACTGAGCCAGCAGATCTGTGGAGGTAAAGTGGACTTTGAGGACTTTGTGGAGCTGATGGGACCCAAGTTGCTGGCAGAGACAGCAGACATGATCGGAGTCAAAGAACTACGAGATGCATTCAAAGAGTTTGACTCTAATGGTGACGGCCAGATCAGTTTAACTGAGCTACGTGAAGCCATGAAGAAGCTGATGGGAGAACAAGTGACCAACAGAGAGATTAACGAGATCCTCCGAGATGTCGACCTCAACGGAGATGGTCTGGTGGACTTTGAGGagttTGTTCGAATGATGTCCCGCTGA

Function

symbol description
cabp2 Predicted to enable calcium channel regulator activity. Predicted to be involved in sensory perception of sound and visual perception. Located in Golgi apparatus and plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 93.

NR:

description
calcium-binding protein 2-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813183.1 False 1230 mRNA 0.47 7 21158895 21173771
XM_039813184.1 True 1280 mRNA 0.48 7 21166135 21173379
XM_039813185.1 False 962 mRNA 0.47 6 21166267 21173379

Neighbor

gene id symbol gene type direction distance location
LOC120566628 LOC104961166,LOC103390920,LOC102076832,LOC103354772 coding upstream 4067 21146681 ~ 21154828 (+)
si:dkeyp-121d2.7 LOC103354771 coding upstream 22448 21132215 ~ 21136447 (+)
LOC120567251 NA coding upstream 91175 21060005 ~ 21067720 (+)
LOC120567467 tlx3,LOC102778180,LOC103390932,LOC104948897 coding upstream 196415 20958750 ~ 20962480 (+)
LOC120567465 fam196b,LOC106941975 coding upstream 293881 20842597 ~ 20865014 (+)
LOC120566636 LOC104961169,LOC103354768,LOC101069382 coding downstream 6220 21179991 ~ 21182550 (+)
slc43a3b slc43a3 coding downstream 68683 21242454 ~ 21259046 (+)
rtn4rl2b LOC104945075,LOC103358608 coding downstream 91221 21264992 ~ 21271131 (+)
clp1 clp1,LOC102795812 coding downstream 110247 21284018 ~ 21287806 (+)
si:dkey-6i22.5 NA coding downstream 134321 21308092 ~ 21310959 (+)
G106684 NA non-coding upstream 50536 21107498 ~ 21108359 (+)
G106679 NA non-coding upstream 58060 21100484 ~ 21100835 (+)
G106577 NA non-coding upstream 427222 20710509 ~ 20731673 (+)
LOC120567249 NA non-coding upstream 882984 20273833 ~ 20275911 (+)
LOC120567444 NA non-coding upstream 1160094 19973785 ~ 19998801 (+)
G106707 NA non-coding downstream 19295 21193066 ~ 21194849 (+)
G106708 NA non-coding downstream 22408 21196179 ~ 21196654 (+)
G106709 ctnnd1 non-coding downstream 23033 21196804 ~ 21202170 (+)
G106712 LOC103354767 non-coding downstream 30918 21204689 ~ 21205376 (+)
G106851 NA non-coding downstream 273111 21446882 ~ 21447096 (+)
hrh2a LOC103354784,LOC104948895 other upstream 211480 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 806728 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 1097557 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 1506421 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 2188949 18963934 ~ 18969946 (+)
selenoh selenoh other downstream 105916 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 115760 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 275029 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 1688419 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1729984 22903755 ~ 22909562 (+)

Expression


Co-expression Network