LOC120566636 (LOC104961169,LOC103354768,LOC101069382)


Basic Information

Item Value
gene id LOC120566636
gene name LOC104961169,LOC103354768,LOC101069382
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21179991 ~ 21182550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813191.1
GCCAGGTTCTCTCAAAGCTCTACGCGAGGCAGGCCGTAGGCGCGTACCACTATCGAACTCTTCCAATAAAGTGCCAATCTAGGAGTAAAGATGTACAGAACTACAAGGTCCCCAATGATGCAACCGCTGGTCAACTCAGGAATGGGCATGGCTCCTTTCTTCAAGGTGACTGTGTTCGAGCAGGAGCATTTCCAGGGCAAGTGCCTGGAGTTCACCTCTGAGTGCTGCAACATTCAGGATTGCGGACTGGACAACATCCGCTCCATCAGGGTGGAGAGCGGAGCcTGGGTGGGTTTTGAGCACCATGACTTCCAGGGGCAGCAGTTCATCCTGGAGAGAGGAGAGTACCCCCACTGGGACGCTTACAGCGGTTCCCTCTCCTACCATGTGGAGCGCCTCATGTCTCTGCGCCCCATCTACTGCGCCTCCCACCAGAGCAGCCGCATGATCATCTTTGAGAGGGAGAACTTCATGGGCCGCAATGTGGAGATCTGTGACGACTACCCCTCTCTGCAGGCCATGGGCTGGATGATGCCTGAAGTTGGCTCCATGCACGTGCAGTGCGGCGCCTTTGTGTGCTACCAGCACCCTGGCTACAGGGGCCAGCAGTACATCATGGAGTGTGAGAGACACAGTGGAGACTACCAGCACTGGAGGAACTGGGGCTCCCACTGCCAGACCCCCCAGATCCAGTCCATCAGGCGCATCCAGCACTGAGAGAACAACAGGCTGAGACTGAGACAGCAGCTCCCCCTCGACCCCACTCCCTTCACCCTAAacccccttcctctttctttccttctctcttcaATCCTTTCCTTCCTCTTGACTTGAGCCGCAACAGCCGCCCCAACACCACTACTGATTTACAGCCGCAGCCAGAGTGTGATAAAAGACAATATCGCACTTTTAAAGCACAGGGAAACACACgctccacacaaacacattgctGACATAACGGACACTCACACAGTGTCTTTTTATTTGGTTTGGAGGTccctacacactcacacacacctgcgcTGTACTCCTCACCTGAGCTGGGCGACGACTAGAGCAATTCTTCAGTGCGCTGGATCCAAACAGAGGGGAGATGAAGCTACAGCATGGCGTCCCGGCCAGGTCTCCTCAGTGCAGCTCagatgtgttttgttgttgtgtaggAGGTTGATAACTAATAAACTAATTTTCACTTCA

Function

NR:

description
PREDICTED: beta-crystallin A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813191.1 True 1197 mRNA 0.54 6 21179991 21182550

Neighbor

gene id symbol gene type direction distance location
cabp2b cabp2,LOC103354773,LOC101063225,LOC104961167,LOC100691085,LOC101481420,LOC107101015,LOC105932663,LOC106516609,LOC102297131 coding upstream 6220 21158895 ~ 21173771 (+)
LOC120566628 LOC104961166,LOC103390920,LOC102076832,LOC103354772 coding upstream 25163 21146681 ~ 21154828 (+)
si:dkeyp-121d2.7 LOC103354771 coding upstream 43544 21132215 ~ 21136447 (+)
LOC120567251 NA coding upstream 112271 21060005 ~ 21067720 (+)
LOC120567467 tlx3,LOC102778180,LOC103390932,LOC104948897 coding upstream 217511 20958750 ~ 20962480 (+)
slc43a3b slc43a3 coding downstream 59904 21242454 ~ 21259046 (+)
rtn4rl2b LOC104945075,LOC103358608 coding downstream 82442 21264992 ~ 21271131 (+)
clp1 clp1,LOC102795812 coding downstream 101468 21284018 ~ 21287806 (+)
si:dkey-6i22.5 NA coding downstream 125542 21308092 ~ 21310959 (+)
med19a med19 coding downstream 128487 21311037 ~ 21314140 (+)
G106684 NA non-coding upstream 71632 21107498 ~ 21108359 (+)
G106679 NA non-coding upstream 79156 21100484 ~ 21100835 (+)
G106577 NA non-coding upstream 448318 20710509 ~ 20731673 (+)
LOC120567249 NA non-coding upstream 904080 20273833 ~ 20275911 (+)
LOC120567444 NA non-coding upstream 1181190 19973785 ~ 19998801 (+)
G106707 NA non-coding downstream 10516 21193066 ~ 21194849 (+)
G106708 NA non-coding downstream 13629 21196179 ~ 21196654 (+)
G106709 ctnnd1 non-coding downstream 14254 21196804 ~ 21202170 (+)
G106712 LOC103354767 non-coding downstream 22139 21204689 ~ 21205376 (+)
G106851 NA non-coding downstream 264332 21446882 ~ 21447096 (+)
hrh2a LOC103354784,LOC104948895 other upstream 232576 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 827824 20351721 ~ 20352167 (+)
LOC120566323 LOC102781894,LOC101481808 other upstream 1118653 20028863 ~ 20061338 (+)
G106237 spock1 other upstream 1527517 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 2210045 18963934 ~ 18969946 (+)
selenoh selenoh other downstream 97137 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 106981 21289531 ~ 21350978 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other downstream 266250 21448800 ~ 21468827 (+)
G107163 LOC103356264 other downstream 1679640 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 1721205 22903755 ~ 22909562 (+)

Expression


Co-expression Network