ptcd3 (ptcd3,LOC102784107,LOC104953014)


Basic Information

Item Value
gene id ptcd3
gene name ptcd3,LOC102784107,LOC104953014
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 5956064 ~ 5974484 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813216.1
cttttctcAGCCTACATGGTTTCTCCCTCCCAGAAGCCTCCAGTTTGTAACAACATGGCGGCGCCCGGTAGGCACGTAGGGCATTATATCCGAAGAAACAGccgatttttgataaataatttcGAGCTGTTATGGGGTCACAGGTGTTTTGGTTGGACTCCAGCTCTTCGACAACAAGTTGCAGAAGCTAATGAAGAATCTACAGGTACTATTGTGATCCCCAGGAAGAAAACATGGAGCAAGGAGGCAGTGCTGGAGGCTCTGGCTTCGACTGTCAGCAGGGATCCGACAGCATATTCCCACCAGTTCCAGGATGACCCTTACCTCTCTCCCAGGACCTCGTCTGAGTTTAAGCtgtactctctctctcaggaGTCTGGCAGATCAGCAGCCAAATTTTTTGTCAACAGCAATCCCAAGTTCTTCACCAAAGACTTTGCTGAACCACATATACCAtgtctgATGCCAGAGACTGTGTCACTGCTCCTCGAGGAGGTGAGTGAGGAGGCACTAAAAGAACGAATCACCTTGAGGAAAGTGTCAGCTGCTGTTGACATGTATGATCAACTACTGCAAGCtgGCACAGCAGTCTCTATGGAAACGACCCATGAATTGTTAGACCTGATCTGTCTGTACTGTGACAGAGACCCTGTCCAGGAGGGAGAACAGCCCGAGGACATGgaaGAGTCAGGAGAGGAGGTGAAGAAAAGGAAAGGGAGGTTCCGCCGGGCTTCAGACTTCCTGAGGTTTACctggaaagaaaacaacaacgCCGAGAGAATCTTTAACCTGCTGCCGGAGAGAGACACCCGGTGTTACTCTGCTCTGATCAGAGGCATGGTGAAGCATGGAGCCTACGCAAAGGCCTTCAGCATGTACACAGACATGCTTAACAACCGCATGACCGCTGACGTGCACATCTTCAACGCTCTGATGTCAGCAGCTCCAGATGTCCGAGATAAATACAACGAGAGGTGGGACCTCATCACTGAGCTGTTGAACCAGATGAGTCAACAGAAAGTTCAGCCCAACCTGCTCACCTTCAACAGCGTTCTCAAAGCTCTGAGGCGCTGTGGCTCTCTGGCAAAAACACAAGCTCTACACACTCTGAATGAGATGAAGGCTGTGGGAATAgctcCCAGCCTGGCCTCCTTCGACCACATCCTGGCAGTCTTTTCCAAAGCAGGTGGTTTTGTTTCCTCTCCAGCCTCCTCTGGCCAGGGCAACACCGACATTTTACAGGAAGTGATGGCAGAGCTGGCAGGAACCAGCTTCACCTGCCAGGACCCCAATGACGtTCTATTCTTCTCGAGTGCAATGAGAATATGTCTGGATAATAAAGATTTGGAGCTGGGTTATAAGGTCCACAGTCTAGTAGAACAGGGGGAGAACTGGAGGCTTCTGGGAGATCCCTACCAACAGAGTATTTACTAtGGTCGCTTCTTCAACCTGCTGTGTATGATGGAGCACATTGACGTGGTGTTGAAGTGGTACAGACGGCTCATTCCCTCGTTGTACTACCCAAACCCTCAGGGACTGAGGGACCTGCTGCAGGCTCTGGACACAGACAGTCGGCTGGACTTGCTGCCCACTATATGGAAGGATATCCGGACTCTAGGTCATGATAATAAGTCTGATCTGGTGGAGGAGCTGCTCACCCTGATGgccagagacagacacagtccTGAGgttcaGGAGGCTTTTGCATCGTGTGCTCTGGATGTAAAGAGTGTGTTTGACGGAGACCGAGGGAGGCACAGTCTGGAGTGGAGCACCTCCGCCCTCTCACACATCACCTCCCTGCTGCTGCGAGCCAACAAGAGCCAACAGGCCTGGGAGATGCTGCAGCTCTTCAAAACCAAGAACAGAGTTCCTGAGGAGGGGCTGTTAGAGGACTTCCTGTCGATGTATCACAGCGCCGGCTCTTCCCAGAGAGCAGTGGAGCTGGTTCAGCTGTCTGcatccttctgtctgtctgcaacGCCAAGGCTGGCGAAACGGACACTGGCCGAGTTTGATCTGACCGAGGAACAAAGAGCCGTATTATCTGAACTGGAGTCTACGGAAGAGGCCTCTGACTGAAGGAGGCAATAGTGGGCAAACCATTACGACGCCGATCCATTAATACAAACATTTCCCATATTGTGTGTAGTGTACTTGTTTCGTTATCTATGTAATAAAAATATGTCACATAAAATGTAA
>XM_039813217.1
cttttctcAGCCTACATGGTTTCTCCCTCCCAGAAGCCTCCAGTTTGTAACAACATGGCGGCGCCCGGTAGGCACGTAGGGCATTATATCCGAAGAAACAGccgatttttgataaataatttcGAGCTGTTATGGGGTCACAGGTGTTTTGGTTGGACTCCAGCTCTTCGACAACAAGTTGCAGAAGCTAATGAAGAATCTACAGGTACTATTGTGATCCCCAGGAAGAAAACATGGAGCAAGGAGGCAGTGCTGGAGGCTCTGGCTTCGACTGTCAGCAGGGATCCGACAGCATATTCCCACCAGTTCCAGGATGACCCTTACCTCTCTCCCAGGACCTCGTCTGAGTTTAAGCtgtactctctctctcaggaGTCTGGCAGATCAGCAGCCAAATTTTTTGTCAACAGCAATCCCAAGTTCTTCACCAAAGACTTTGCTGAACCACATATACCAtgtctgATGCCAGAGACTGTGTCACTGCTCCTCGAGGAGGTGAGTGAGGAGGCACTAAAAGAACGAATCACCTTGAGGAAAGTGTCAGCTGCTGTTGACATGTATGATCAACTACTGCAAGCtgGCACAGCAGTCTCTATGGAAACGACCCATGAATTGTTAGACCTGATCTGTCTGTACTGTGACAGAGACCCTGTCCAGGAGGGAGAACAGCCCGAGGACATGgaaGAGTCAGGAGAGGAGGTGAAGAAAAGGAAAGGGAGGTTCCGCCGGGCTTCAGACTTCCTGAGGTTTACctggaaagaaaacaacaacgCCGAGAGAATCTTTAACCTGCTGCCGGAGAGAGACACCCGGTGTTACTCTGCTCTGATCAGAGGCATGGTGAAGCATGGAGCCTACGCAAAGGCCTTCAGCATGTACACAGACATGCTTAACAACCGCATGACCGCTGACGTGCACATCTTCAACGCTCTGATGTCAGCAGCTCCAGATGTCCGAGATAAATACAACGAGAGGTGGGACCTCATCACTGAGCTGTTGAACCAGATGAGTCAACAGAAAGTTCAGCCCAACCTGCTCACCTTCAACAGCGTTCTCAAAGCTCTGAGGCGCTGTGGCTCTCTGGCAAAAACACAAGCTCTACACACTCTGAATGAGATGAAGGCTGTGGGAATAgctcCCAGCCTGGCCTCCTTCGACCACATCCTGGCAGTCTTTTCCAAAGCAGCCTCCTCTGGCCAGGGCAACACCGACATTTTACAGGAAGTGATGGCAGAGCTGGCAGGAACCAGCTTCACCTGCCAGGACCCCAATGACGtTCTATTCTTCTCGAGTGCAATGAGAATATGTCTGGATAATAAAGATTTGGAGCTGGGTTATAAGGTCCACAGTCTAGTAGAACAGGGGGAGAACTGGAGGCTTCTGGGAGATCCCTACCAACAGAGTATTTACTAtGGTCGCTTCTTCAACCTGCTGTGTATGATGGAGCACATTGACGTGGTGTTGAAGTGGTACAGACGGCTCATTCCCTCGTTGTACTACCCAAACCCTCAGGGACTGAGGGACCTGCTGCAGGCTCTGGACACAGACAGTCGGCTGGACTTGCTGCCCACTATATGGAAGGATATCCGGACTCTAGGTCATGATAATAAGTCTGATCTGGTGGAGGAGCTGCTCACCCTGATGgccagagacagacacagtccTGAGgttcaGGAGGCTTTTGCATCGTGTGCTCTGGATGTAAAGAGTGTGTTTGACGGAGACCGAGGGAGGCACAGTCTGGAGTGGAGCACCTCCGCCCTCTCACACATCACCTCCCTGCTGCTGCGAGCCAACAAGAGCCAACAGGCCTGGGAGATGCTGCAGCTCTTCAAAACCAAGAACAGAGTTCCTGAGGAGGGGCTGTTAGAGGACTTCCTGTCGATGTATCACAGCGCCGGCTCTTCCCAGAGAGCAGTGGAGCTGGTTCAGCTGTCTGcatccttctgtctgtctgcaacGCCAAGGCTGGCGAAACGGACACTGGCCGAGTTTGATCTGACCGAGGAACAAAGAGCCGTATTATCTGAACTGGAGTCTACGGAAGAGGCCTCTGACTGAAGGAGGCAATAGTGGGCAAACCATTACGACGCCGATCCATTAATACAAACATTTCCCATATTGTGTGTAGTGTACTTGTTTCGTTATCTATGTAATAAAAATATGTCACATAAAATGTAA

Function

symbol description
ptcd3 Predicted to enable rRNA binding activity and ribosomal small subunit binding activity. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 51. Orthologous to human PTCD3 (pentatricopeptide repeat domain 3).

NR:

description
pentatricopeptide repeat domain-containing protein 3, mitochondrial

GO: NA

KEGG:

id description
K17659 PTCD3; pentatricopeptide repeat domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813216.1 True 2202 mRNA 0.51 23 5956064 5974484
XM_039813217.1 False 2181 mRNA 0.51 23 5956064 5974484

Neighbor

gene id symbol gene type direction distance location
LOC120567040 LOC104949792,LOC104935341,LOC107391212,LOC106530877,LOC103151698,LOC105918375 coding downstream 9514 5920351 ~ 5946550 (-)
LOC120567039 LOC103361901,LOC100704274 coding downstream 41327 5909740 ~ 5914737 (-)
LOC120567038 LOC104958725 coding downstream 54768 5897142 ~ 5901296 (-)
LOC120567274 NA coding downstream 102518 5851783 ~ 5853546 (-)
LOC120566289 fgl1 coding downstream 209426 5732226 ~ 5746638 (-)
LOC120567409 NA coding upstream 1136764 7111248 ~ 7112332 (-)
LOC120567393 NA coding upstream 1138211 7112695 ~ 7113960 (-)
trnam-cau_10 NA coding upstream 1147569 7122053 ~ 7122125 (-)
trnam-cau_11 NA coding upstream 1149119 7123603 ~ 7123675 (-)
trnam-cau_12 NA coding upstream 1158348 7132832 ~ 7132904 (-)
G103621 NA non-coding downstream 60906 5894819 ~ 5895158 (-)
G103618 NA non-coding downstream 67980 5887551 ~ 5888084 (-)
G103612 NA non-coding downstream 90604 5864980 ~ 5865460 (-)
G103519 NA non-coding downstream 434676 5517147 ~ 5521388 (-)
G103513 NA non-coding downstream 466207 5489629 ~ 5489857 (-)
G103657 NA non-coding upstream 25605 6000089 ~ 6001998 (-)
G103661 NA non-coding upstream 36284 6010768 ~ 6021714 (-)
G103694 NA non-coding upstream 114578 6089062 ~ 6109745 (-)
G103712 casp3,LOC104959742 non-coding upstream 171062 6145546 ~ 6169247 (-)
G103731 NA non-coding upstream 284227 6258711 ~ 6259004 (-)
G103434 LOC102212171 other downstream 1369980 4575782 ~ 4586084 (-)
myot LOC103355626,LOC104955473 other downstream 1380388 4554225 ~ 4575676 (-)
fmr1 fmr1,LOC102779310 other downstream 1498237 4426517 ~ 4457827 (-)
LOC120567378 NA other downstream 1556006 4320649 ~ 4400058 (-)
smim19 smim19 other downstream 2022844 3928930 ~ 3933220 (-)
LOC120566343 NA other upstream 782308 6756792 ~ 6759576 (-)
G103806 NA other upstream 1311975 7286459 ~ 7286972 (-)
LOC120567361 NA other upstream 3192806 9167290 ~ 9177633 (-)
abhd18 abhd18 other upstream 3381228 9355712 ~ 9457863 (-)
LOC120566283 magt1,LOC102791632 other upstream 3589515 9563999 ~ 9569926 (-)

Expression


Co-expression Network