hs3st1 (hs3st1,LOC102780858)


Basic Information

Item Value
gene id hs3st1
gene name hs3st1,LOC102780858
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27478825 ~ 27481536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813232.1
AGGGGGGAGTGGTCCTGCAGGCGTACTGTAGGCGTAGGCTTCAACAGCTGACACACAGACCGGGAGGACAGTCGGGCTCGGAAGCAGAGCTCAGAGGAGGCGCTCCGGTGAAGTTGTGACCCTGCGTCCGAGGCGAGTTTTGTGCGCTCGGAAGAGACCACGGAGACTGTCTAGAGCCGGAACATAAACCCGCAGTTTTGGAAGTACTGGTGCTGAGAACAGTGAGTTCAACGCTGCACGAAATGAAATCGAGTCGAGAGGATTATAGTTAGAAAGTTACTGCTCCTGGCAGAGAAGATacagttttttttgcttttcaatTGGACCATTGTGCTCAGGCAGCTGCTTTTTCAATGTGGGATACAGTTTTGGTGCTTTTGCCAGGCTGAAATCCTCCAGTGTCAGGACCTCCCTCATGGCAGCCGTGCTCCTCGGGCTGCTGCTTTTTGCAATGCAGTCTCCCCCCGTCCCCTCCAGGCCCATGGCTAACGAGGGGCCACCTTCCACCTCATCGCCCACCTACAACGACAAGACCACCAGCCACCCAAACGGGACCCTCCAACAGCTTCCTCAGATTATAATTATTGGCGTGAGGAAGGGGGGAACGCGGGCTCTGATAGAGATGCTCAGTCTGCACAGTGCAGTGGCGGCGGCTCAGAACGAGGTGCACTTCTTTGACTGGGAGAGCCACTTTCAGAAGGGCTTGCCTTGGTATCTCAGCCAGATGCCCTACGCCTTCCCCGACCAGCTGACGGTTGAGAAGACGCCGGCCTACTTCACCTCCAGCAAAGTCCCCAAACGCATTTATCAGATGAACACTGACATCAAACTGCTGCTCATCCTCAGAGACCCCACGGGGCGGGTGCTGTCGGACTACACCCAGGTCTTTTACAACCGCCTCCAGAAGCACAAGCGCTACCAGCCCATCGAGTCCGTTCTGGTGAAGGACGGCGAGATCAACCTGGGATACAAGGCTCTCAATCGCAGCCTGTACTATGTTCACATGCAGAACTGGCTGCAATACTTCCCACTGGAGAGCATTCACGTGGTGGACGGGGATGAGTTGATCAGGGACCCCTTCCCCGAGATGAAAAAGGTGGAAAGATTCTTAAAGCTGGAGCCCCAGATAAATGCTTCAAATTTTTACTTCAATAAAACTAAAGGATTCTACTGTTTGAGAGACCACGGGCGAGAACGGTGTTTACATGATTCAAAAGGCAGGGCTCACCCTCATGTGGCGCCTGCCATCCTGCAAAAACTCTACCAGTTCTTTCACGAACCCAACAAAAAGTTCTTTGAGCTGGTGGGCCGACCATTCAACTGGAAATGAGCGTCTGAGTCTCAGTAGATTGGCGTAGAGTTGCTTGGGGATAATCTGTTTTCCTCATTAACAATGTAGATTAAGAGACAAAGCTAATGTAAATTTAAACTCAATCTATTTTTGTACTAGTAGTCTACATTTGTTACAGGAGTATGATCGAGCCAAATGCAAGGGCAGACTAAAGTTCATGACATGCTTTGTTAGTGCATgtcttatttcttttcattgtCAAACATATGCATTTTACTGTCTTTTTGGACTGTTAAAAACAGTCACTACTGTTTAGCTAGATTGATCAAAAACTTATAATGACATTTAGACTGTGCCAGTTCATGTTTCACTTCATATAATATGGCATTATTAACGTCTAACTGCCTTTAGAACTCTAAAGGACCTGTACCTGCTGCTATGATTTTGTCACTTTCAGGCGTGAGCCGTTACTCAAATGTTTCTTTCATGTAAGATTTATGTATTTCAATTTTCTGCGCACATCATATATTTGTTGATCATCACGGTGTACtgtgaatagttttttttttcccaaaaggTGAAGAATTAATACCATAATAaagatatattttattttta

Function

symbol description
hs3st1 Predicted to enable cholesterol sulfotransferase activity; heparan sulfate 2-O-sulfotransferase activity; and heparan sulfate 6-O-sulfotransferase activity. Is expressed in gut; head; liver; pectoral fin; and somite. Orthologous to human HS3ST1 (heparan sulfate-glucosamine 3-sulfotransferase 1).

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01024 HS3ST1; [heparan sulfate]-glucosamine 3-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813232.1 True 1909 mRNA 0.47 2 27478825 27481536

Neighbor

gene id symbol gene type direction distance location
LOC120566264 NA coding downstream 33778 27432341 ~ 27445047 (-)
gsr gsr coding downstream 58406 27410564 ~ 27420419 (-)
slc30a9 slc30a9,LOC103367187 coding downstream 69988 27396370 ~ 27408837 (-)
LOC120567138 rab11fip5,LOC106925811,LOC103471510 coding downstream 228648 27234682 ~ 27250177 (-)
sfxn5b sfxn5,LOC100712369,LOC102194966,LOC101471447,LOC102299301 coding downstream 245538 27215856 ~ 27233287 (-)
rab28 rab28 coding upstream 223676 27705212 ~ 27735519 (-)
nkx3-2 nkx3-2 coding upstream 259258 27740794 ~ 27744082 (-)
bod1l1 bod1l1,LOC107705061 coding upstream 274987 27756523 ~ 27770255 (-)
trnal-aag_2 NA coding upstream 297597 27779133 ~ 27779214 (-)
LOC120566642 LOC107379338,LOC102290741,LOC103367381,LOC102209025 coding upstream 318290 27799826 ~ 27802336 (-)
LOC120567396 NA non-coding downstream 82794 27394158 ~ 27396031 (-)
G108194 NA non-coding downstream 387150 27091382 ~ 27091675 (-)
G108186 NA non-coding downstream 442740 27035515 ~ 27036085 (-)
LOC120566771 NA non-coding downstream 445658 27023653 ~ 27033167 (-)
G108182 enox2,LOC106949969,LOC107093408,LOC106918471,LOC106514441,LOC107379070 non-coding downstream 470788 27007812 ~ 27008037 (-)
G108351 NA non-coding upstream 276257 27757793 ~ 27758695 (-)
G108352 NA non-coding upstream 290315 27771851 ~ 27772071 (-)
G108353 NA non-coding upstream 291140 27772676 ~ 27772981 (-)
LOC120566995 NA non-coding upstream 486528 27968064 ~ 27970362 (-)
G108422 NA non-coding upstream 499514 27981050 ~ 27981447 (-)
atp8a1 atp8a1,LOC102786596 other downstream 100704 27269370 ~ 27378121 (-)
LOC120567151 bend4,LOC102786006 other downstream 216124 27252395 ~ 27262701 (-)
LOC120566767 NA other downstream 382928 27068521 ~ 27095897 (-)
G108191 NA other downstream 412878 27065418 ~ 27065947 (-)
G108181 LOC103390578 other downstream 477814 26989264 ~ 27001011 (-)
aurkb fbxl12,LOC103367279,LOC104928693,LOC101076892,LOC103149573 other upstream 298596 27780132 ~ 27790211 (-)
LOC120567057 NA other upstream 356032 27837568 ~ 27839107 (-)
LOC120566991 NA other upstream 470720 27952256 ~ 27955694 (-)
G108433 neto1,LOC101071133 other upstream 540201 28021737 ~ 28023229 (-)
LOC120566547 NA other upstream 543034 28024570 ~ 28038700 (-)

Expression


Co-expression Network