nkrf (nkrf)


Basic Information

Item Value
gene id nkrf
gene name nkrf
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25311039 ~ 25315431 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813261.1
CGGCAAAGCATTGTGGGTCGGTGACAGACGCCATGATTTTCTTGACTTGAGCTGGACCAGAAAATGGATGCTTCCTGCTAGTTAGTTGAATGGGTAGCTCCAGCAGGTTTTTGGGCAGCATTTTAAACCACCTGTCTCGGATATTACACTTACAGGATACAAGCCTACGTGTCCGTTTCCTTTAAATACGAGCTGAATCTGACTTAAAACTATATAAGCAGGCTGTTGCTACTGAAGTGGAGCTGGGTTAGCTAGAAGCTAGCACCAGCTAGCtggctaatgctagctagcAATCACCACCGGGTTGCCAATGTTAgttacttagctagctagctagctagctaaaagaGGCTAGCACGAAAATAATATCTGGCTGATCATACAAATAAATGCACTGTCACTTATTTGGCTGAAGGACATAGATATAAATCGGACCAAAGGCTACACCTTAAGGTATGGCCTGGATTTGATTTGGACGGCGCTGGTGATGGCAGAAGGGACTGACACTGGCGAAATGCCCTCCTTTGACCCAAGTCCAAGTTCTGAAGCAAAAAAGAGACCGACTTCTTCTGATGGCAGAGACGAGCCCATGAGGAAAATGCCTGTGTCAAAATTTGGTTCCAGGCCTCGATTCGAGCCTGTACACTTTGTCAGTGGTGGAAGCAGCGGAGGAACTGGTGCTGATGAGAAGGAGAACGAAAAGGAGCGCAGGAGGAGTGAGTCGTATGGTGCAAGACAGTGGGATTCTGAACACTCATCCTACAGCGGCACCAGCAGAGCGCAGGGCTCCTCCTCCCTGAGGCCTGCTTTTGACAGAGTGCCATCGCACAGTTCGGACTCTTGGGGTTCCCATAGAGATAGAGACCGAGATACTTTTTCAGGTAGTACAAGTGGGTTGGGGTATGGAGGACGTGGGTCCACTTCAAACTTTAtggcaaaaacacagcaggactACTCAGCCAAGTATGAAGCCCACTCCTCTCGAACTCTGGATTCTTATTCACAGCCCCACAGATACAATGGATACGGGGGAGGGAGCAGATCAGGAGGCTGGGATTCGGGACGTCAGGGTTTGGGGTTCAGTCATCAGGAGCGGCCGTCATCAAGCAGGCCATTCAGCAGAGTCTACAACAGCCCAGGCAGGAGCAGTCCCAGTCCCACCACTTCTCAGTCGGGCTTCTCCTTGCAGCCTATTGCTATATCTCAGCCAATATTAGATGAGAAGCAAAGGCTGATCTCCTGTGTAGCGTCTGCATTGGCGGTTGCTTTTAGGGACCCCGTGTTCATGACTGGAAGTGAATCGCCAAACTATAATTTCATGTTGAGCCGCAGTATTCAGGCCTGCAAAACTAATCCGGAGTATATATATGTCAACCTGAAGGACATTCCTCAGGCTGACCTACCGAAGAACAGGAAAGTACCAACAGACGGTTACGCCTGTGAACTGAGATGTCAGGGTGTGTATCTTGCCACCGGATACTCTGGTAGTAAAAATGGAGCGAGGGACCGGGCCTCTGAGCAGGCTGTAAAACTCTTCCTGAAAACAGTTGAGGTTCGTGTGGTGCAGCGGAAATACAGACACTCGTTAGTCAATGACATAGTTGTGTGCCAGATGCATAGCCCAACCCCAAGCTTTTTACCTGCACTCCGAAACCCAGATGATAAACCGACACCCAGCTCTAAGGGCCAATACGAGCCTGATAAACGTAAGCACTGGACAGAGTTTGTAGTTATGGACAACGCTCATGACGCCATTTGCATACTCAACAATTCTGCGGCTTTTAATCGCATGAAGATAGACTATAAGTTTGAGTTGCTCCCAAACAACAGTGCTTGGCTGTGCAGTGTTTTCCTGCAGGATGAGCTTGTGGCACAGGCAACCGGTACCAAAAAGAGCTCCAAGCATGCAGCGGCTGAAGACGCAGTGAGGAAACTTCGCATGAATCAGGCACaacgacagcagcagcagctgcagcaacaacagcagcaactacaacaacaacagcagcagcagcagctacaacaacagcaacagtcACAGTCACAATACTCCAGAGGAAATAATCTGCCAGATTCTGGTGGACGCTTTGGGCAACAGGTTGGCAAAAAGAAGCATCTGAGCGAGTTGGTCATCCTTGAAAACTCTGACAATGCAATCTGTATCATTAATGACACAGCTCAGTTTAATAAAGTGACTGCTGATTACAAGTTCACAGTTCTGCCTGATCATCGCTGGAGGTGTGAAGTTTACTTGGAAGGACAGTATGTAGCAGCTGGAATTGGGCCCAAGAAAATAGTGAAGCACATTGCAGCAAATGAGGCCTTAGCCACCTTGAGACAGACGCACGCTGTGGTCAAATCCAACCTAAGAAAGGAGGGGAACAGCGACGCCATATCCCGATCCCAAATCCTGGCTCGCTCAGGTGAGGAGGCCATAAGGCAGGAGATTAAGGAAGACAACATCGGAAACCAGCTGCTCCGCAAGATGGGCTGGAAAGGAGGTGGTCTGGGCCGAGATGGGGAAGGCATTGCAGAACCAATCAGAGTGAAGGAACAGTTCTCCAGGGAAGGGTTGGGTATGGACATGGACAAAGCTGGAAACCAGCTCAGCAAACGTGATATTGAGGACATCATACGTAACTATGCTAGTTCAGACCGTCAGGATGATCTTCGCTTCTCCACTGACCTCACCAACGATGAACGCAAGCAGATCCACCAGATATCTCAGAAATACGGCCTACGGAGCAAGTCGTACGGACAAGGGCGGCAACGGTTCCTTGTTGTCAGTCGCAAAGTACACAAAGACCAGCTCATTGGTCAGCTTTTACAGGAGGGACAGGTGGGACGATATGAACTCGTTAAACCTCAGGCCTCTCACTGATTTGCATGCAGggcaaaataaaattaaaaatcatCGGACATACGCTTGGACTTCAGTACCAATCACACTCAAGTGTAACTGCtctgtttatacttgtgtgtgacaaacttacaatacattaataaaagagAATCCTTCAGGGATCACCTATGGTTTCTGCATTCCTTTGCCATTAAATGTACTTTAGCTTTAGCAGGGGATAATTTAAGACAAGTGATTTGTCTATTTCGGTCTCCTGCCCTTCCacgtcttatttgtttcacttttgCACAACATGCTTGTGTTTGGTAATTTGTGGAATCATGTCTTGGTGTTGTTCtgggtatttttatttttttttaaaagacggAGGATTTTCTCGCCACTTTTTTCCTGGCTATTTAAGAAACCTGGCAAAATATGCAGCTTTTCACTGCTTGTTTAACACTGTTGACAGCTGACTCATGAAAGGTATCAACATCAAACTAGTTAGGTGCACATATCAGTCTCACTGTAGTGATACATTTCTCTCTACCAGCAATGCCGTTTGCTCTTTTAACACCGGTCATTCTACAAATACAAGCTGCATCCATAATCAGAAATCTTCACATGGAAACTGTAAGCTGTGATCTTTGTTTAATGTCTGTGTTGGTTTATGTGAGTACAGTTAACTTGTCTGCTTGTGTTCACAGCTGTtatgaatgaataaattaaaactGATAACAATCA

Function

symbol description
nkrf Predicted to enable nucleic acid binding activity. Predicted to be active in nucleolus and nucleoplasm. Orthologous to human NKRF (NFKB repressing factor).

NR:

description
PREDICTED: NF-kappa-B-repressing factor

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813261.1 True 3589 mRNA 0.47 3 25311039 25315431

Neighbor

gene id symbol gene type direction distance location
upf3b upf3b coding upstream 41809 25265515 ~ 25269230 (+)
LOC120566922 nkap coding upstream 48353 25258629 ~ 25262686 (+)
tmem255a tmem255a coding upstream 59396 25241567 ~ 25251643 (+)
lamp2 NA coding upstream 79536 25215120 ~ 25231503 (+)
cul4b cul4b coding upstream 96492 25202150 ~ 25214547 (+)
trnae-uuc_61 NA coding downstream 5794 25321225 ~ 25321296 (+)
elf1 LOC104965894,LOC103353227,LOC102314295,LOC100712278 coding downstream 6096 25321527 ~ 25363249 (+)
pcdh19 pcdh19 coding downstream 278882 25594313 ~ 25648201 (+)
glra4a LOC106949970,LOC101466695,LOC106920031,LOC106514543,LOC108231179,LOC103151720,LOC100711741,LOC103353264,LOC107377714 coding downstream 1042371 26357802 ~ 26418964 (+)
gla gla coding downstream 1136353 26451784 ~ 26457912 (+)
G107981 NA non-coding upstream 20840 25288119 ~ 25290199 (+)
G107972 NA non-coding upstream 37408 25271539 ~ 25273631 (+)
G107958 NA non-coding upstream 58571 25252125 ~ 25252468 (+)
LOC120566737 NA non-coding upstream 203417 25106440 ~ 25107622 (+)
G107821 NA non-coding upstream 363703 24947121 ~ 24947336 (+)
G107985 tnmd non-coding downstream 65282 25380713 ~ 25394758 (+)
G107988 NA non-coding downstream 71037 25386468 ~ 25387635 (+)
G108020 NA non-coding downstream 183185 25498616 ~ 25498866 (+)
G108030 NA non-coding downstream 333103 25648534 ~ 25648802 (+)
LOC120566339 NA non-coding downstream 335284 25650715 ~ 25652662 (+)
sept6 sept6,LOC106945475 other upstream 821 25291607 ~ 25310218 (+)
rpl39 NA other upstream 28832 25279568 ~ 25282207 (+)
LOC120567498 NA other upstream 29959 25280948 ~ 25281080 (+)
apln NA other upstream 214016 25073213 ~ 25097023 (+)
nox1 nox1 other upstream 464146 24840186 ~ 24846893 (+)
btk btk other downstream 1145857 26461288 ~ 26476570 (+)
timm8a timm8a other downstream 1161365 26476796 ~ 26479297 (+)
grxcr1a grxcr1,si:dkey-109l4.6,LOC102787492,LOC106600617,LOC107601454 other downstream 2072215 27387646 ~ 27393621 (+)
LOC120566985 NA other downstream 2660896 27976327 ~ 28046891 (+)
fgfrl1a fgfrl1,LOC104949359 other downstream 3168246 28483677 ~ 28558216 (+)

Expression


Co-expression Network