tnmd (tnmd)


Basic Information

Item Value
gene id tnmd
gene name tnmd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25366170 ~ 25432527 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813267.1
aaaatataaatgaaaacatcaGCATCTGCACTATGTGGCACCCTCCCAAATTACAGCAGTGGAAGGAAGCTGGGACTCTAAGCCTTGCAGTACGTTACTATTTTCCCCAGCTAAGACGACTGGAAAGATTCCTCCTGCAGGCTTGTATAATGGAGGCAAGCAGTCAATCCAGCAGTCAGCAGATTCTGTGGAAAGATGTTGAGGtgggaaaagagaagaaggccAAGTACCACACCTACCAGCGAGtggctctggttctggctctggtCTTTCTCGTTTTGGCTGTCTGTGTTTTCAGCCTGAGATATCTGTGGAGCCCCAGTCTGGGGAAGGTGTACGACCACCAGTACAAAGCTATGTTGGATGGAGTAGAGAGAGACGGTATGATGGAGATTGACCCAGGGCAGCGCATGGAGATCTTCAGAATGGGGAACGGCAGCGAGGAGGTACTTGAGGTGCACGACTTCAAAAATggAATCACTGGGATCCGGTTTGCCAAACATCAGAGGTGCTACATCAGGACCCAAACTAAGAAACTACCCACAGTGGCAGAGGTGGAAGCTGAGGACACAGAGTTACTGGTGGAGACCGAGGCCATGGATATGGATATGAAGGTGGAAGAGTCCCAAGTATGGGTTCCTGCCGAGGAGCCCATCGTTAACCCAGCCTTTCTCTTCAACTCTAAGATCTGGGAGATTTGCCAGGAGCTGCCTATCCACTGGATCCATCCCTCTCCTCTGAGTGATGCTGAGGTTGGAAATGTGGATGCACCCGATGCAGAGGTTACAGGTCAGCGTTTCACCCGCGACGTCCTGGACCACCCTGCCGTAAACGACTACAGAGACATTGGAATCGAGCTGGATAACCGTCTGGATGACAACGGCTACTGCTGCCAGTACTGTCGCCGTGGTTACCGCTACTGCCGCCGCTACCACGAGCCCTTGGGTGGCTTCAACCCGTGGCCATACTACTACCAAGGAGGCCGGGTCATCTGTCAGGTTGTCATGCCGTGCAACTGGTGGATCGCCCGCATGCTGGGGAGGATCTGAGGAGGGCGTGTGCTGTCTGGGATTTAAACTGTATGTCATTGTAGGTGCAAATTCTCCTGTTGATAAATATTCCAGACCACTCTGAGACCAAAGCAGTCCATTGCACACAATTATTATCCAATCTGAAAGTTGGCCCACAGTCTAAATGGCATTTGAAGTGTTTTGATTCTTTCTTAAAAGGCATTCCGCGTTTACAGCTGTCTAATTTCCTTTGCTTATCTACCCATTTAGTATTCTTGCTATTTGATTCTGTTGAATGGGTGCAATTTAGTTTGGAAGATGTTAGCAGAAACTAATCTGCTCTAGCACTCTGTCCTGACTTTGTcatgcattcattttttttttttttacttcatagGTTAAAAGACTTGTTCTactaatactgtatgtatggaaatgtacatacagtacacaaataTATGCAACAGTCTGGGTGGTGCTATCACATTTACCTAAATATATGTTTTGTCTCAGTTGTTTGTGATCTGTTTAACTTTATTGCTTAAGCAAATGAAAAACCCTCTCTATATCCACGTACAATTTGAATACCATATGCAATATATTcaacttaaaacaaaatgagggaaagaaacaaataagcaaattaaaataagataaaacaTAATTAGAGGAAGTTTCCTTCTGGCTTTATGTATCAGAACAAtttcttttatctgtttttaatatcATGTTAAACTAAGGAGGTACATTATAATGGACCTCAGCTGTCTTTTGTGATGCAGTTGCTGTTGTCTTATGCTTCATTGTTTTCCCTCTTGCTGCAATCCACAACATTCTTTAAATAGTGCTACtgttcaaactgtttcttctttGCTTAGGCAATTTTAATCTGTAACACCACATCTCAATCTGTCGAGCTGAAATAAGAATCATCTGAAAGTAACAGATAAGCAAGCAAGATAGGCATTTGCAATTGATGTTCTGTCATCAGAATAACAAGGTGCATAAATGCCCAGGAGTATTCAAGCGATGTGAGatattaaaaagttaaacaGAGAGACAAAAATGGAGCAGTCATGTTGTCATAGTTTGCTTTGAAGGCttctgtatgtttctgtgtctttatGAATTTCTTTCCAATtaaaatttcattttatgaaTAACGTGAGTTGTAAAATCATATGAAACAATCTGATTTGAAAGCTGATGTGTGGGTTTGAATCTGACTCATGCAATCCATAAGGGTTCCTTGTCTCTTCTCCATTAGTCCCATTGCTCATTAGCAAAAACATTTAGCATCAAATTGACAAGAAAAAGCTAGACGTGCATGCTTTTATTGTTTCTATTTCATAACTCGAGTCTCTCTTGTGTATCTGATGCATAATAATGCATTGTTTACAGTAATAAAAGAGCATCTCGCCTGCTAAAGGTAAAGCTGGATGATGACTCATATTGGCAGTGTGATAATAATATCAGTGATATCAATATTTGGCAGTGAAATGGATTATGTGAAAAAGGGTGAAACattttactgtatgtaaatgttttatgGATATGCTCATAAATGGAACTCAGACTGCAAccttattgttatttttaaatcaattatgTCAATAGCCCAAAGCAACATGTAAGTAAAAAATGAGTTAACAAATGCAATAATTGCAAACATACTTCAAATAAACTGACAAGTGTACAGCAAA

Function

symbol description
tnmd Predicted to be involved in several processes, including endothelial cell morphogenesis; negative regulation of endothelial cell proliferation; and negative regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cleithrum; myoseptum; perichondrium; pharyngeal arch 1; and swim bladder. Orthologous to human TNMD (tenomodulin).

NR:

description
tenomodulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813267.1 True 2713 mRNA 0.41 8 25366170 25432527

Neighbor

gene id symbol gene type direction distance location
ube2a ube2a,Ube2a,ube2al,LOC103150206 coding downstream 45648 25316298 ~ 25320522 (-)
pttg1 NA coding downstream 76036 25284705 ~ 25290134 (-)
sowahd NA coding downstream 81605 25282801 ~ 25284565 (-)
zbtb33 zbtb33 coding downstream 108538 25252765 ~ 25257632 (-)
atp1b4 atp1b4 coding downstream 127556 25233186 ~ 25238614 (-)
zgc:101583 LOC103366979,LOC102198838,LOC100710928,LOC102783729 coding upstream 1046364 26478891 ~ 26483763 (-)
med12 NA coding upstream 1054645 26487172 ~ 26517479 (-)
wu:fb13g09 LOC103367058 coding upstream 1086288 26518815 ~ 26569298 (-)
enox2 enox2,LOC100709872,LOC102784575,LOC101473670,LOC102307254 coding upstream 1144407 26576934 ~ 26768933 (-)
LOC120566770 NA coding upstream 1478393 26910920 ~ 26914664 (-)
G107992 sept6 non-coding downstream 68904 25291617 ~ 25297266 (-)
G107923 NA non-coding downstream 179692 25180938 ~ 25186478 (-)
G107907 NA non-coding downstream 292338 25073181 ~ 25073832 (-)
G107903 NA non-coding downstream 385373 24977124 ~ 24980797 (-)
G107890 NA non-coding downstream 475454 24890301 ~ 24890716 (-)
G108031 NA non-coding upstream 216007 25648534 ~ 25648780 (-)
G108036 NA non-coding upstream 247565 25680092 ~ 25680437 (-)
G108040 NA non-coding upstream 342055 25774582 ~ 25774823 (-)
G108082 NA non-coding upstream 1019283 26451810 ~ 26452058 (-)
G108083 NA non-coding upstream 1021669 26454196 ~ 26454400 (-)
G107989 NA other downstream 78084 25279603 ~ 25288086 (-)
ndufa1 NA other downstream 101306 25263172 ~ 25264864 (-)
trnav-uac_15 NA other downstream 503986 24861970 ~ 24862184 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other downstream 787071 24573441 ~ 24579099 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other downstream 1377269 23884588 ~ 23988901 (-)
diaph2 NA other upstream 404803 25837330 ~ 26258199 (-)
rpl36a LOC106604455,LOC100304549,LOC100219516 other upstream 1025468 26457995 ~ 26460732 (-)
G108181 LOC103390578 other upstream 1556737 26989264 ~ 27001011 (-)
G108191 NA other upstream 1632891 27065418 ~ 27065947 (-)
LOC120566767 NA other upstream 1635994 27068521 ~ 27095897 (-)

Expression


Co-expression Network